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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002044 ID=TCONS_00002044|Name=TCONS_00002044|organism=Clytia hemisphaerica|type=transcript|length=2401bpRun BLAST on NCBI protein sequence of TCONS_00002044-protein >TCONS_00002044-protein ID=TCONS_00002044-protein|Name=TCONS_00002044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp MSVESKARVYADVNTHRPREYWDYESHVIEWGQQDNYQLVKKLGRGKYSERun BLAST on NCBI transcript from alignment at sc0000018:461247..483338+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002044 ID=TCONS_00002044|Name=TCONS_00002044|organism=Clytia hemisphaerica|type=transcript|length=22092bp|location=Sequence derived from alignment at sc0000018:461247..483338+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000018:461247..483338+ >TCONS_00002044 ID=TCONS_00002044|Name=TCONS_00002044|organism=Clytia hemisphaerica|type=CDS|length=11583bp|location=Sequence derived from alignment at sc0000018:461247..483338+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002044 vs. Swiss-Prot (Human)
Match: CSK21 (Casein kinase II subunit alpha OS=Homo sapiens GN=CSNK2A1 PE=1 SV=1) HSP 1 Score: 521.161 bits (1341), Expect = 4.260e-178 Identity = 269/323 (83.28%), Postives = 298/323 (92.26%), Query Frame = 1
Query: 136 VESKARVYADVNTHRPREYWDYESHVIEWGQQDNYQLVKKLGRGKYSEVFEGVKVTNNDXXXXXXXXXXXXXXXXXXXXXLENLRGGQNIITLLDVVKDPVSRTPALVFEYVNNTDFKSLYNQFTDHDVRFYMYELLRALDYCHSMGITHRDVKPHNVMIDHEQKKLRLIDWGLAEFYHPMQEYNVRVASRYFKGPELLVDFQEYDYSLDLWSFGCMFASMIFRKEPFFHGHDNYDQLVRIAKILGTDELFDYMDKYGISLDPRFNDILGRHSKKRWERFINTDNQHLVSSEAXXXXXXXXXYDHMERLTASEAMDHPYFATV 1104
V S+ARVY DVNTHRPREYWDYESHV+EWG QD+YQLV+KLGRGKYSEVFE + +TNN+KVV+KILKPVKKKKIKREIKILENLRGG NIITL D+VKDPVSRTPALVFE+VNNTDFK LY TD+D+RFYMYE+L+ALDYCHSMGI HRDVKPHNVMIDHE +KLRLIDWGLAEFYHP QEYNVRVASRYFKGPELLVD+Q YDYSLD+WS GCM ASMIFRKEPFFHGHDNYDQLVRIAK+LGT++L+DY+DKY I LDPRFNDILGRHS+KRWERF++++NQHLVS EALD LDKLL+YDH RLTA EAM+HPYF TV
Sbjct: 5 VPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV 327 The following BLAST results are available for this feature:
BLAST of TCONS_00002044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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