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TCONS_00002042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002042
Unique NameTCONS_00002042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002042 ID=TCONS_00002042|Name=TCONS_00002042|organism=Clytia hemisphaerica|type=transcript|length=2817bp
ACCGTGTGGCCAACGACAATGACCATGTAGCCAACGACAGTGACCGTGTA
GCCAACGACAATGACCGTGTGGCCGACGACAGTGACCGTGTGGCCAACGA
CAGTGACCGTGTGGCTAACGACAGTGACCGTGTAGCCAACGACAGTGACC
GTGTGGCCAACGACAGTGACCGTGTGGCCGACGACAGTGTCCGTGTGGCC
AACGACAGTGACCGTGTGGCCAACGACAGTGTCCGTGTGACCAACGACAG
TGACCGTGTGGCCAACGACAGTGACCGGGTGGCCAACGACAGTGACCGTG
TAGCCAACGACAGTGACCGTGTGGCCAACGACAGTGACCGTGTAGCCAAC
GACAGTGTCCGTGTGGCCAACGACAGTGACCGTGTGGCCAACGACAGTGA
TCGTGTAGCCAACGACAATGACCGTGTGGCCAACGACAGTGACCGTGTAG
CCAACGACAGTGACCGTGTAGCCAACGACAGTGTCCGTGTGGCCAACGAC
AGTGACCGTGTGGCCAACGACAATGACCATGTGGCCAACGATAGTGACCG
TGTAGCCAACGACAGTGATCGTGTAGCCAACGACAATGACCGTGTGGCCA
ACGACAGTGACCGTGTAGCCAACGACAGTGACCGTGTGGCCAACGACAGT
GACCGTAACACGACGTGACACGAACGTGACTAAAATGACCAAATCAATAC
ACAATTATTTACTCATATCGATTAAAGattttttcaaatgtcATGTTACA
CCGATTGATATTATCAATACAAGTTTATTGTTCGAACGAGGATACAGGTT
GTCAATGGGTCGGTGAAGTCAACCAATTGGAGGAGCATTTACTGTCATGC
GCAAAGGGTACAGGTTACCATCCCAACAGAAGAGCATTAACATTCGGTAA
AAAACAGCACGGTTTTAACAACTCGGCATCAAGCAGTTCcaataaccatc
attctttcaaccaatcacaacacgacaattttcaaaacaatgtGATGCTC
AACATGCTGGATAGTTTAACATCACTTCGTTCGAAAATGGATTTCATCGA
AAACAACATTACACCTAACCATACGTCATCTCCTGAAAGGCACGCCACGA
GTGCTTGCCATTCGCGCACACCAAGCTCTGGCACCGGTGGGAATACTCCT
AAAGTCCAGCGTAAAAGATCACGACGCAGTCAAAGCGAGGAAACAACTGC
TCTAACTAAATTCAAAAACCTCATTCATTTCGAAAATCAAACCTACctga
aaatcggattttttgtCGCCTTAATATCGATATACCTGATGACGGCAAAG
TTGTTTTACACCATGGAAAATACTCCATCTTACGACTCTACAGCATGTGG
AAACCGCTTCGATCGTCTTTTGTCACAGGACATTCAAAAGAGCACTGAAA
CATTTGAGGCCGGTTTTCATCGTCTAAGTGAATTTCATGAATACAACATA
AGGATCCATCTACATGAGCTTCAATCGCAAGAAAAGGAAGCGGCCGAAAT
GATCCCATCTTTTTATCGCGAGATGAACCGAACCATTGTAGAGATGGATC
GACGTTTTCATTGGCTGATTGAACAATCACGTGatgaaatcaaaagaaac
attacgtcatttgaTGACCGATCACTGAGGGAATTCTCAATCGATAGCGT
GGTGGTTTTAGTTGGTATGGTCAATGATATTACCAATAATGTTTGGAGGC
GAGTGACCGAAGAAATGAGTTTCAGCGAATATCGAATGTTGAACCGAGCA
GGAGCTCTGGTTGATTTTGTacgacaaaaatattttgaaattttggagaa
AGCCAAGTTCAATTTAAGCCAAACAAAAGGGCGGTCAGCTTTAAAAGATC
TAAGTCTGGAGTACGAAGGATTTGTATCAAATGTAACGCAACGCCTAACT
AGCCTGCATGAAGATCAAGTGGAATCAATGGTCAGGCTAGATATATCAAC
CGTTCGTAAATTTTACGAGGATTATTTACGAGCGTATTACACGAATCAGT
CGCAACTGGTAACGCACGAAAATCGTTTGCAGTTCTTGGTAGATTCGGTG
CAGAACAAGAATCTAATGAACGGTCGTTTTATTTGGCAATTAAATGCTAC
GCGAATCTTGGAAACAAGACGCAGCAAAGATGTACAAAGTTCAATTGAGT
TTCGATCTGGGTCTATGGGCAAAGCGCGTTTGTATTTGTACCGCGATCGA
GTTCGTAAAGGGTTTTGGAAGATGTCCTTTGTCCAAGTGGACTTAAATCC
AGTTAAGATTTGGCTATCTGTATTAAGTCAAGTTAAGCCGGAGCTGTTAT
TGATTCACGAGAATATCGTTGGTTCTGTTACAATTCCGGTCACCAAGGCT
GAGagatcgaaagtgaaagtggtcAAACATTTCTCACTACCAATGAATAC
TACCAAGCTGATTGAGAAAGGTTATATTAAGAATGGTAGAATCTACATTC
GATGTCTTACTACTGACTAAATACATTACTGATGTGATGTATTTATTATA
GAGATGTTATAATAAGAGACTTGGGCGGGAAAAATGTTTATTCTAGGAGC
TAAGTGATATGCCTGACCTTGGTATTATAGATTTTNGGACTTGAGCGGGG
AAAATGTTTATTTTAGGAGCTAAGTGATATGCCTAACCTTGGTATTATAG
ATTTTGTTGTTGTATCAGTTAATTAAAATGTCGGTTATTGTATTctaaaa
aaatcgaacaaatgtttttaaagctaaaaataatattattcattctttga
aaattcttaatattttttagatttaaaccGTGTGactcttataaaaagaa
ttcttatacaaaaaaat
Run BLAST on NCBI

transcript from alignment at sc0000018:443603..449276+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002042 ID=TCONS_00002042|Name=TCONS_00002042|organism=Clytia hemisphaerica|type=transcript|length=5674bp|location=Sequence derived from alignment at sc0000018:443603..449276+ (Clytia hemisphaerica)
ACCGTGTGGCCAACGACAATGACCATGTAGCCAACGACAGTGACCGTGTA GCCAACGACAATGACCGTGTGGCCGACGACAGTGACCGTGTGGCCAACGA CAGTGACCGTGTGGCTAACGACAGTGACCGTGTAGCCAACGACAGTGACC GTGTGGCCAACGACAGTGACCGTGTGGCCGACGACAGTGTCCGTGTGGCC AACGACAGTGACCGTGTGGCCAACGACAGTGTCCGTGTGACCAACGACAG TGACCGTGTGGCCAACGACAGTGACCGGGTGGCCAACGACAGTGACCGTG TAGCCAACGACAGTGACCGTGTGGCCAACGACAGTGACCGTGTAGCCAAC GACAGTGTCCGTGTGGCCAACGACAGTGACCGTGTGGCCAACGACAGTGA TCGTGTAGCCAACGACAATGACCGTGTGGCCAACGACAGTGACCGTGTAG CCAACGACAGTGACCGTGTAGCCAACGACAGTGTCCGTGTGGCCAACGAC AGTGACCGTGTGGCCAACGACAATGACCATGTGGCCAACGATAGTGACCG TGTAGCCAACGACAGTGATCGTGTAGCCAACGACAATGACCGTGTGGCCA ACGACAGTGACCGTGTAGCCAACGACAGTGACCGTGTGGCCAACGACAGT GACCGTAACACGACGTGACACGAACGTGACTAAAATGACCAAATCAATAC ACAATTATTTACTCATATCGATTAAAGGTATAATCAACTTTTCTTACAAT ACACAGATACAGTTACCTCCCTCTAATccgaacctctataattcgaattt tccATCATTCGAAACTAAAACCTTTGTTTCATCAGCTGGAAATGTCATAT GTAATTCAAATCTTCCTCGGATTCATACGTCTCTGAGACAGCTCTTGTTG TTAATTCATTGCACGACTTGTAAACCTCGTAAATTTTGCTTAATGATATC GTCGcggttttaatgtttttttttaaataataaaaccGCCCATTTTTTCG ATGAGAGATATGAATGTAtcttttgctttgttttttttctctgtaTGCGA TCTTTTGTTTGCGATAGACCGTCTTcagattttatcaattttacttATAT GACTGATACACAAACTGAAGTATGACAGAAAATATATGGCCGACATAATG AGTCATTTGTACGCTATAAATCATCCCTCTTCCCTCTTTTGCTCTTTGTT TCGATTTATTCCAATGGGTtcttccagaaaatatttgtaCATAAGTGGTG GAGGatatatattggatattttgtccgggggtattggaaaatctgcaaaa tttacctttttttagGGGCTTACTTGCTCTGATTcggggtgattttgaat gtccgggggggggTCAACTGACTGACTCTCAACTGGGTTGAGATCGGTTG TCCGGGgagtaaatttccaaaatatgTTTCAGCcagcatattcaattttt ttctggaagagcccaatctcCCGAACCTTATCAGGAccactttgaaaata ttttcaaatattgtcAAATGAAAAGTGTCTTACTTGCTCaatttccattt tattttggaGGTATCCAGAAGCATAATTCGTGGTATtcattcatgacgta atgttttatacggaagcacaaAAAAAAGACCGGGTATTTGTCActaattt tgaatccaaaattGGTGGCAAAAGTCCGAGCTATTTTAAATGCTTCCGTT TAGAACATATCATCGTGAATATCATGACTTCCATCCCAGCAGGGGCCCCT CTGAAAACCATAACTTTattaattgtttcgtttttttaaagattttttca aatgtcATGTTACACCGATTGATATTATCAATACAAGTTTATTGTTCGAA CGAGGATACAGGTTGTCAATGGGTCGGTGAAGTCAACCAATTGGAGGTGA GGCAGAATTAATATTTCATAATTGCACGATAGGttgttattttttctcaa agagagcaattaatcgtttaattgcatcctgtaataccgtggtataatag ccatggtatatcatggtaattattcaatggctgtttttgcctacaggtat ataataatagaaaaaaatcttcgaacattatcattattttttcttagctc tagtttagacggccgactttctgccctgcctattctaattgttagagtag gcagaatGTGGGCACAAAGTTGGCTGTTAAAATGAAGTGCGTATCCTCac taaatataataaaatttatATCTGATTAACGTCACACTTCTATCGttcga ttatttttgaaaattcgatTAAAATCAAACTATTTTCAGGGCAAGTTTCC TCGTATACTGTGTCGATAAAACCTTCTGGTGTGTAAGATTCAGAAAACAT CTCCCGTAGGTAATTCTGTAGCACCAGTAGTACAGATAAGGTGATTTTTC CCACTTTGTCAAGATTCTTGTAGAGGAAAATTCTAAATCTTCTTAAGACA TAGGACCAAATGCATTTTCAGAGATTCTACGGAAACGTGATAAGTGATAA TCATAGTGTCCAGCCCCCCCCCTCTTTTACTGGGGGGCTAgagattttta aaatgttccaaaaatggGGCAACAAACCTTAGTTTAAGACTTTTTCCCTT TCAATGTGTCAGATGGTCCAGAGTACCGGTTCCCACAAATCTCCAAAAAT GGGGGGGGGAAGGGGGTctgggaaattttgaattttctggaGGGATGAGG TAGAAGGGGTCACCTGCTTTTTTCCCTGAGGGCTGAGACCCTAAGGACAC TATGATAATTAAATACACGACTTCTGAGGGAAAGGTCCTGTTGAATGGAG GGTTTAAGGCAGTCTATCCCCAAAGGAAAAGCACTGTCTCCGACAAATAC ACATTAAGGTACAGGATAGTGTCATGGTTGATGTAATTGGGGTCATCAAG ATGGTAATAAGCTAGGTCCTTGAAGGCCGAATGTGTCGTATTCAAATGCT TTGTATTAGAAGTAaaattctatttcaatgatcttaagttatcaaaaata gcaaaagaaatattttttccggcCTGctgcatgagagcttttttccttca cccgcattctggaaacactacatttttttattgtcCAATTTCTTGATTTT AATCGCCATGTTTCCTTACCTCTATTTTTAGGAGCATTTACTGTCATGCG CAAAGGGTACAGGTTACCATCCCAACAGAAGAGCATTAACATTCGTAAGA AGTATTCTTTTGGCCTTCACAAAATTATTCTGACCATTTATGTTAAATGA TAGCTAGAAAAGCAAATCACACTTTACATCTTTATGAATATATTAATAAT TCTTGATCTTGATCTGTTTTTAAAGAACGTTGATGTTTAAGAACTATCCG CGGGGGCACAATCGTACGTGCGTGCGGCCCTTAATGGTCCTTTTTCTTCC CAAAGTACACTGTAAATGTCCAAATAAGCAAAGGATGAGACAAAACTTTT AAGAAAACTTACCGTAAGGGTAGATTTTTCgacaaatttgctcaaatttg gctaaatgtCTTCTGCACTGTAAGGCCTTTATTTTGGGCCccacgtacgg tcgtttttgaatcgagtgccctcCCCCTCCGGGAGAATCATGCACTCCCT AAATCACAAGAAAgtattttaaacctaaaaaatttcaactctatttttgt tttagtttgGGAAAGTATCTTTGTtgacaagattttttgaagaatagaTA TATTAGAGGAATACGGAAATTAATGACTCTTTCATCTCATTTATAACTCT AGGGTAAAAAACAGCACGGTTTTAACAACTCGGCATCAAGCAGTTCcaat aaccatcattctttcaaccaatcacaacacgacaattttcaaaacaatgt GATGCTCAACATGCTGGATAGTTTAACATCACTTCGTTCGAAAATGGATT TCATCGAAAACAACATTACACCTAACCATACGTCATCTCCTGAAAGGCAC GCCACGAGTGCTTGCCATTCGCGCACACCAAGCTCTGGCACCGGTGGGAA TACTCCTAAAGTCCAGCGTAAAAGATCACGACGCAGTCAAAGCGAGGAAA CAACTGCTCTAACTAAATTCAAAAACCTCATTCATTTCGAAAATCAAACC TACctgaaaatcggattttttgtCGCCTTAATATCGATATACCTGATGAC GGCAAAGTTGTTTTACACCATGGAAAATACTCCATCTTACGACTCTACAG CATGTGGAAACCGCTTCGATCGTCTTTTGTCACAGGACATTCAAAAGAGC ACTGAAACATTTGAGGCCGGTTTTCATCGTCTAAGTGAATTTCATGAATA CAACATAAGGATCCATCTACATGAGCTTCAATCGCAAGAAAAGGAAGCGG CCGAAATGATCCCATCTTTTTATCGCGAGATGAACCGAACCATTGTAGAG ATGGATCGACGTTTTCATTGGCTGATTGAACAATCACGTGatgaaatcaa aagaaacattacgtcatttgaTGACCGATCACTGAGGGAATTCTCAATCG ATAGCGTGGTGGTTTTAGTTGGTATGGTCAATGATATTACCAATAATGTT TGGAGGCGAGTGACCGAAGAAATGAGTTTCAGCGAATATCGAATGTTGAA CCGAGCAGGAGCTCTGGTTGATTTTGTacgacaaaaatattttgaaattt tggagaaAGCCAAGTTCAATTTAAGCCAAACAAAAGGGCGGTCAGCTTTA AAAGATCTAAGTCTGGAGTACGAAGGATTTGTATCAAATGTAACGCAACG CCTAACTAGCCTGCATGAAGATCAAGTGGAATCAATGGTCAGGCTAGATA TATCAACCGTTCGTAAATTTTACGAGGATTATTTACGAGCGTATTACACG AATCAGTCGCAACTGGTAACGCACGAAAATCGTTTGCAGTTCTTGGTAGA TTCGGTGCAGAACAAGAATCTAATGAACGGTCGTTTTATTTGGCAATTAA ATGCTACGCGAATCTTGGAAACAAGACGCAGCAAAGATGTACAAAGTTCA ATTGAGTTTCGATCTGGGTCTATGGGCAAAGCGCGTTTGTATTTGTACCG CGATCGAGTTCGTAAAGGGTTTTGGAAGATGTCCTTTGTCCAAGTGGACT TAAATCCAGTTAAGATTTGGCTATCTGTATTAAGTCAAGTTAAGCCGGAG CTGTTATTGATTCACGAGAATATCGTTGGTTCTGTTACAATTCCGGTCAC CAAGGCTGAGagatcgaaagtgaaagtggtcAAACATTTCTCACTACCAA TGAATACTACCAAGCTGATTGAGAAAGGTTATATTAAGAATGGTAGAATC TACATTCGATGTCTTACTACTGACTAAATACATTACTGATGTGATGTATT TATTATAGAGATGTTATAATAAGAGACTTGGGCGGGAAAAATGTTTATTC TAGGAGCTAAGTGATATGCCTGACCTTGGTATTATAGATTTTNGGACTTG AGCGGGGAAAATGTTTATTTTAGGAGCTAAGTGATATGCCTAACCTTGGT ATTATAGATTTTGTTGTTGTATCAGTTAATTAAAATGTCGGTTATTGTAT Tctaaaaaaatcgaacaaatgtttttaaagctaaaaataatattattcat tctttgaaaattcttaatattttttagatttaaaccGTGTGactcttata aaaagaattcttatacaaaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001074XLOC_001074Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002042-exon-sc0000018-1491911889:443603..444329TCONS_00002042-exon-sc0000018-1491911889:443603..444329Clytia hemisphaericaexon
TCONS_00002042-exon-sc0000018-1510915933:443603..444329TCONS_00002042-exon-sc0000018-1510915933:443603..444329Clytia hemisphaericaexon
TCONS_00002042-exon-sc0000018-1575043694:443603..444329TCONS_00002042-exon-sc0000018-1575043694:443603..444329Clytia hemisphaericaexon
TCONS_00002042-exon-sc0000018-1491911889:445394..445498TCONS_00002042-exon-sc0000018-1491911889:445394..445498Clytia hemisphaericaexon
TCONS_00002042-exon-sc0000018-1510915933:445394..445498TCONS_00002042-exon-sc0000018-1510915933:445394..445498Clytia hemisphaericaexon
TCONS_00002042-exon-sc0000018-1575043694:445394..445498TCONS_00002042-exon-sc0000018-1575043694:445394..445498Clytia hemisphaericaexon
TCONS_00002042-exon-sc0000018-1491911889:446734..446796TCONS_00002042-exon-sc0000018-1491911889:446734..446796Clytia hemisphaericaexon
TCONS_00002042-exon-sc0000018-1510915933:446734..446796TCONS_00002042-exon-sc0000018-1510915933:446734..446796Clytia hemisphaericaexon
TCONS_00002042-exon-sc0000018-1575043694:446734..446796TCONS_00002042-exon-sc0000018-1575043694:446734..446796Clytia hemisphaericaexon
TCONS_00002042-exon-sc0000018-1491911889:447355..449276TCONS_00002042-exon-sc0000018-1491911889:447355..449276Clytia hemisphaericaexon
TCONS_00002042-exon-sc0000018-1510915933:447355..449276TCONS_00002042-exon-sc0000018-1510915933:447355..449276Clytia hemisphaericaexon
TCONS_00002042-exon-sc0000018-1575043694:447355..449276TCONS_00002042-exon-sc0000018-1575043694:447355..449276Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:443603..449276 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.876922 0.347749 0.55449 0.124157 3.95893 2.3175 2.15913 2.25011 4.98297 6.51823 4.41845 5.63055 5.58143 6.44078 7.54842 8.55303 7.47279 9.83159 7.79191 5.91039 6.01795 5.30434 1.97921 2.36649 4.00047 2.73154 2.178 2.1344 2.19695 1.90068
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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