TCONS_00002033 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002033
Unique NameTCONS_00002033
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002033 ID=TCONS_00002033|Name=TCONS_00002033|organism=Clytia hemisphaerica|type=transcript|length=1761bp
GGAAAGATGAAATGGAGTTTTTATAAGATACTTCAATAATTGGTCATTTG
AAGTAATTAGAATGGCGCGTTCTTTAGAAAAAGTAACAAAATTGTTTTAT
TACTGGTTAACGACCAACAAAATCAAATAAGAGCTTGAAAAAACTCCATC
TTGTCCCAAAAGGGAGAAGGCAAAAAAACAATGAGATTAGATCCAAAGTA
GCAGTAATATCACTCTATCGTCGACACTGGAAACGTTTAAAGGCGAAATA
AGAAGAAAACAAACATGTTTCATGTAACACTGATATTCGTGATATCAACA
TGTGTTTATTTTACAACTTCCAATGGTGTTGTGCAGAATTTCGACGATTT
TTCAATGTTAGGGTGTTCAGAGTTCAGGAACGTCACCTTCATAACCTTTC
ATTACCATTATTTTGGTGGTTTTGATCGTACTTTAGATGACAGTTTTTTC
TTGCAAGAATTCAACGATTTACTTGACAATGAAGCATGTTTTATGGTAAA
CTACTTCGACGGTTTTGACATAGTCAGATTGAGAAAGAACTATAATATCA
ATCAATTTCAATTACGAACAAACAGTTTTCGATTAGAATACTCTCGATAT
AAGAACGAATGGCGTAGAATCGCCGAACTAATAAAGCAGCTTTATGATGA
CAAAATCATGGGAGATAACAAAAACATTAAACAAACTATTGTCCTTATGG
GAGATGATGTCCGTTTTGCTGATGAAATTCTCGTATATCTGGAGTTACTG
CAGGAAGAGAGACAATGGGCAGTTATCATTTATAGGACATATTCTCAATA
TAAACCAATAGATTGGCTTCCATTAAATCGAAATATTGAAACACAAATTA
TGACTGGTATTACAATGCAGCACCAAGTCATTAAGACACTATTCGATGTC
ATAAAAAATCCGGACTTTGATGTTTACAATATGACGTACCGTTGGGTCAT
GTCtaagagaaattttttcactgatGATTGCATGAAGGAGATTCGAAAGA
TATTCATCACTGTTCTTTATATGAAATTTACCTATGTTCCAATGGCGTCG
GCCATTTTAAGAAAAGTAAACGACCATCGTTCTAAAGTAAACCAAGAACC
ATtagaaattcatttttcttcttactGGAAAGGCATGAAACTATCATCAG
ACGGGCAGTTGAGTAGAACTGAGTTTCATTGGAAAAACCATCCCCTTTAC
AAGGAAAAGAACAAAAGATATGTTTACATCCAAATTTTATTCGGGGAAGA
ATCGCAGCATTATTGTCCACAATTTATTGAAAAGCAAGACTTATACTACC
GGCAATTTTTATCGAAAGGGATAGAGAAATGTTTCGATGATGTTAACGCT
AAAACTATTGAGACTGGCGAGGAGCTGTTCGAACATATAAATGATGATTT
GTGcaaaaagtgaattattttGTGTACCatgtttttgtaaataaaataat
tttaatgttCAGTGCTATCGTATGCTAGGGAATATAATATTTTGTATACA
CGTCACTTTTATGTCAGAGAGAATTGTTAGTTACTTCAaatcaatttata
attttttaaacatgaaCATTTCTTTGATACTTATTATTAATCGCATGTAA
TTTTGCACCATTTTGTACTTTCTTTGCAGCTGTaattttctgtttatttt
tgtaattcaaaaaaatatataatcttTCTTTGTCCattattttctttctt
gattTGTCTTCCTAGAGGTCCAGACCCTTATATATAATACTTTAAACACT
TTTTACATCTT
Run BLAST on NCBI

transcript from alignment at sc0000018:253993..255753+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002033 ID=TCONS_00002033|Name=TCONS_00002033|organism=Clytia hemisphaerica|type=transcript|length=1761bp|location=Sequence derived from alignment at sc0000018:253993..255753+ (Clytia hemisphaerica)
GGAAAGATGAAATGGAGTTTTTATAAGATACTTCAATAATTGGTCATTTG
AAGTAATTAGAATGGCGCGTTCTTTAGAAAAAGTAACAAAATTGTTTTAT
TACTGGTTAACGACCAACAAAATCAAATAAGAGCTTGAAAAAACTCCATC
TTGTCCCAAAAGGGAGAAGGCAAAAAAACAATGAGATTAGATCCAAAGTA
GCAGTAATATCACTCTATCGTCGACACTGGAAACGTTTAAAGGCGAAATA
AGAAGAAAACAAACATGTTTCATGTAACACTGATATTCGTGATATCAACA
TGTGTTTATTTTACAACTTCCAATGGTGTTGTGCAGAATTTCGACGATTT
TTCAATGTTAGGGTGTTCAGAGTTCAGGAACGTCACCTTCATAACCTTTC
ATTACCATTATTTTGGTGGTTTTGATCGTACTTTAGATGACAGTTTTTTC
TTGCAAGAATTCAACGATTTACTTGACAATGAAGCATGTTTTATGGTAAA
CTACTTCGACGGTTTTGACATAGTCAGATTGAGAAAGAACTATAATATCA
ATCAATTTCAATTACGAACAAACAGTTTTCGATTAGAATACTCTCGATAT
AAGAACGAATGGCGTAGAATCGCCGAACTAATAAAGCAGCTTTATGATGA
CAAAATCATGGGAGATAACAAAAACATTAAACAAACTATTGTCCTTATGG
GAGATGATGTCCGTTTTGCTGATGAAATTCTCGTATATCTGGAGTTACTG
CAGGAAGAGAGACAATGGGCAGTTATCATTTATAGGACATATTCTCAATA
TAAACCAATAGATTGGCTTCCATTAAATCGAAATATTGAAACACAAATTA
TGACTGGTATTACAATGCAGCACCAAGTCATTAAGACACTATTCGATGTC
ATAAAAAATCCGGACTTTGATGTTTACAATATGACGTACCGTTGGGTCAT
GTCtaagagaaattttttcactgatGATTGCATGAAGGAGATTCGAAAGA
TATTCATCACTGTTCTTTATATGAAATTTACCTATGTTCCAATGGCGTCG
GCCATTTTAAGAAAAGTAAACGACCATCGTTCTAAAGTAAACCAAGAACC
ATtagaaattcatttttcttcttactGGAAAGGCATGAAACTATCATCAG
ACGGGCAGTTGAGTAGAACTGAGTTTCATTGGAAAAACCATCCCCTTTAC
AAGGAAAAGAACAAAAGATATGTTTACATCCAAATTTTATTCGGGGAAGA
ATCGCAGCATTATTGTCCACAATTTATTGAAAAGCAAGACTTATACTACC
GGCAATTTTTATCGAAAGGGATAGAGAAATGTTTCGATGATGTTAACGCT
AAAACTATTGAGACTGGCGAGGAGCTGTTCGAACATATAAATGATGATTT
GTGcaaaaagtgaattattttGTGTACCatgtttttgtaaataaaataat
tttaatgttCAGTGCTATCGTATGCTAGGGAATATAATATTTTGTATACA
CGTCACTTTTATGTCAGAGAGAATTGTTAGTTACTTCAaatcaatttata
attttttaaacatgaaCATTTCTTTGATACTTATTATTAATCGCATGTAA
TTTTGCACCATTTTGTACTTTCTTTGCAGCTGTaattttctgtttatttt
tgtaattcaaaaaaatatataatcttTCTTTGTCCattattttctttctt
gattTGTCTTCCTAGAGGTCCAGACCCTTATATATAATACTTTAAACACT
TTTTACATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001070XLOC_001070Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002033-exon-sc0000018-1491911889:253993..255753TCONS_00002033-exon-sc0000018-1491911889:253993..255753Clytia hemisphaericaexon
TCONS_00002033-exon-sc0000018-1510915933:253993..255753TCONS_00002033-exon-sc0000018-1510915933:253993..255753Clytia hemisphaericaexon
TCONS_00002033-exon-sc0000018-1575043694:253993..255753TCONS_00002033-exon-sc0000018-1575043694:253993..255753Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:253993..255753 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.657772	0.35204	0.245978	0	0.0927118	0.119201	0.383797	0.614968	0.325685	0.316553	0	0.036249	0.391115	0.677818	0.271775	0.531421	0	0.11226	0.116128	0.0625294	0.296923	0.332409	0.808174	0.411925	0.168172	0.0750446	0.45844	0.174194	0.35479	0.634971
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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