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TCONS_00002029 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002029
Unique NameTCONS_00002029
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002029 ID=TCONS_00002029|Name=TCONS_00002029|organism=Clytia hemisphaerica|type=transcript|length=331bp
CTACTAACACTAACAATATTtggaatatcttaaaatttggaTAATGTATT
GTTCACACTGTCACTAGAGACAGAGCTCACAGCAGGCTACAAACTGAAAT
TGTGAGGGTTATTGCATTAGtatatatatgaaaatatttggtACCCCAAC
CGTAAAATTGTGATGTATGCCATTTGTAGAAAGTGGACTAAAATATACAA
TTGATTATGCATGGGTCATTGACTAAATAAGCGAACTGCCATCCCATGGA
CAGAATCTgagatttacaaaaataatgtaCATTCAATTGGCTAAAAATGG
AAAGAGTATTGAAAGCTTGGATATTGCTTTT
Run BLAST on NCBI

transcript from alignment at sc0000012:1073396..1073726

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002029 ID=TCONS_00002029|Name=TCONS_00002029|organism=Clytia hemisphaerica|type=transcript|length=331bp|location=Sequence derived from alignment at sc0000012:1073396..1073726 (Clytia hemisphaerica)
AAAAGCAATATCCAAGCTTTCAATACTCTTTCCATTTTTAGCCAATTGAA TGtacattatttttgtaaatctcAGATTCTGTCCATGGGATGGCAGTTCG CTTATTTAGTCAATGACCCATGCATAATCAATTGTATATTTTAGTCCACT TTCTACAAATGGCATACATCACAATTTTACGGTTGGGGTaccaaatattt tcatatatataCTAATGCAATAACCCTCACAATTTCAGTTTGTAGCCTGC TGTGAGCTCTGTCTCTAGTGACAGTGTGAACAATACATTAtccaaatttt aagatattccaAATATTGTTAGTGTTAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001066XLOC_001066Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002029-exon-sc0000012-1491911889:1073396..1073726TCONS_00002029-exon-sc0000012-1491911889:1073396..1073726Clytia hemisphaericaexon
TCONS_00002029-exon-sc0000012-1510915933:1073396..1073726TCONS_00002029-exon-sc0000012-1510915933:1073396..1073726Clytia hemisphaericaexon
TCONS_00002029-exon-sc0000012-1575043694:1073396..1073726TCONS_00002029-exon-sc0000012-1575043694:1073396..1073726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:1073396..1073726 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.303996 0.512032 0 0.451657 1.5349 1.20459 1.76216 2.39969 8.82699 8.9973 4.70596 3.02972 0.837804 2.52815 2.64216 2.3273 1.17481 2.747 7.36169 0.00193165 0 0 0.491523 0 0.557283 4.069 2.12014 0.66144 1.61671
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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