TCONS_00002028 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002028
Unique NameTCONS_00002028
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002028 ID=TCONS_00002028|Name=TCONS_00002028|organism=Clytia hemisphaerica|type=transcript|length=373bp
AGAAAAACTAAATGGTGAAATAATTTACGGTTTGGCTAGGAGAATGCGAC
TCTTTTGAATAACAAAACGATCCTGTCGACACACCGGGTAGTCCAGTGTT
TTGTCGGGTACCAAAAAGTATCTCTCAGCCACATCGAATAACCTTTTGTC
CGGTGTTAGTCCAGTATTAATTTCTCAAACTTCTGGACACCAGACATGtg
tgtttcaaaaataatgcaCAGTGGATGCACCGGACTACCGGACTTAAGTC
CTGCAATgcaacaacttcgaacaaaaatcgcaatcaaaccaatcaaacgt
aatcatcgaacgcaatcgaataattaaATAATCCAATCTCAATCGAAGGg
ctgattcctgggtaatattcgat
Run BLAST on NCBI

transcript from alignment at sc0000012:989117..989489

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002028 ID=TCONS_00002028|Name=TCONS_00002028|organism=Clytia hemisphaerica|type=transcript|length=373bp|location=Sequence derived from alignment at sc0000012:989117..989489 (Clytia hemisphaerica)
atcgaatattacccaggaatcagcCCTTCGATTGAGATTGGATTATttaa
ttattcgattgcgttcgatgattacgtttgattggtttgattgcgatttt
tgttcgaagttgttgcATTGCAGGACTTAAGTCCGGTAGTCCGGTGCATC
CACTGtgcattatttttgaaacacaCATGTCTGGTGTCCAGAAGTTTGAG
AAATTAATACTGGACTAACACCGGACAAAAGGTTATTCGATGTGGCTGAG
AGATACTTTTTGGTACCCGACAAAACACTGGACTACCCGGTGTGTCGACA
GGATCGTTTTGTTATTCAAAAGAGTCGCATTCTCCTAGCCAAACCGTAAA
TTATTTCACCATTTAGTTTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001065XLOC_001065Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002028-exon-sc0000012-1491911889:989117..989489TCONS_00002028-exon-sc0000012-1491911889:989117..989489Clytia hemisphaericaexon
TCONS_00002028-exon-sc0000012-1510915933:989117..989489TCONS_00002028-exon-sc0000012-1510915933:989117..989489Clytia hemisphaericaexon
TCONS_00002028-exon-sc0000012-1575043694:989117..989489TCONS_00002028-exon-sc0000012-1575043694:989117..989489Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:989117..989489 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.648983	1.26572	1.46962	0.479266	0	0.230529	0	0.260376	0.36459	0.225802	0.657507	0.144073	0.287746	0.44824	0.245676	0.395472	0.162396	0.332902	0.919845	0.240638	0.418316	2.14242	0	0.225502	0.232261	0.207288	0.593256	0	0.480214	0.244631
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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