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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002026 ID=TCONS_00002026|Name=TCONS_00002026|organism=Clytia hemisphaerica|type=transcript|length=2174bp
ATCGGTCGTACTGGAATTGAAGTAAAGAGTAGTCCAAACCATAGTCTACA
ACACCCGACATGGCTTTATAATGGAATGCCCTTTTCATTGACAATCGAGA
CTCGTTCCCCGAAATAGCGTTTTCGCACCATTCGTTTTTGACATATAATA
AATGCCAAATTGCAATTTCAATAAACTCTACACGAAATGCTCTATAATAA
GGAATTTGCATTTCTTCTGTCACTAGTTGTTCGAGAACATCGCTATAAAA
TTGGAAGTAGTGTTTGTTTTCCATCAATTTATCGAGACATTGCTGTGCAA
AGATTCTATCTTCCCCGTCGAGCAAAGCAACACGTTCTTCTGGCAACGAC
TTGTACAGGCCCGTTTCGCTTTTTGTACCCGTGTACAGTATCCTTCTTTT
CTTTAGTTTCTTTAGAAAAACagcaagaaattatttttctgaatttttga
cTGGGAAAACTGCGAAAATATACTAAGAGGATGGAATATGAGGACTTGAA
CATAAGTTCGTGGGGGAAATACACaagttttcatgttttttattagATTT
GTGGTCTTTCGACCGAACCAAATCAACCATAAACAAGGTGTGTGTGCATG
TTAGTTGAAGATGTTAGTTAGTTGTTGACGTCTTAGTGTATAGCTGGATC
AGATGTGGATGTGATTTTCTGTTGCATCCTTGTCCAAGTCACCAATGTAG
TGTGAATGATCACCCGCGATCAAGTATCCCCGTACTGTCCCGTTGCTGGC
AATGTAAAAATACATCGTTGAAGTCGTCGAGTTTGTCCCAGTGATCGAAT
GTTCCAAAGTCCGAACTCTTTCAGTCTTCTCCATATTCTCCAATTATGTA
TCTCTTTGGGCGTTCTCCTCCGGGGACATCTACAACCAAAGACAGTGTTG
CCATGTCTCCGTGGTATGTCAATTCAAGTTTGAAATCTGGTGTTGCAATC
ATGTTGATAGTATATCTAAGGCGTCAGTATAtagttttgttcaaatttaa
aaattttctcttGGAGTGGAAAATTTGGAAAGTTTTGAGCTATTTTTTCA
GCTTCTTTGGAAATGCAGATAACTTTGACATTTGAAGGGACATCAACGGG
AATACACTTTAAAACAACAGATAAGGGACTAACGATATGTAGTTCATGAA
AAAGGGTAGATACAGATTCATCAGTAATAGTTGTTTGTAAAGCGGGTTGG
ACAGGATGAAATTGATGCAGCTCCTTAGCACGCAAATCTTTTCGGTTGAC
atcaatattatttttcttatcatCTGAGCAGATCTTTTTCCTTATAACAa
tgtcttttaatttttttggcccGATTTCCCTCTTGGTTTCTTGTTCCAAT
CACATGGAACGTCGGTACAGGCAGGGTCGAGATATCCTTTCTGGTCAGCA
TAATCTAGTTTATACATAACAGCAATCACGCGATTGCAAGAGCGGCTACT
ACCGTCAGCCATACAACTACACCAACATGTCAAAATGGTAACAGTGTTTT
TCTGAATAGCTATCCACAAACGTTTTGTGTCGCTCACTGTTAGTGAAGGC
CTGAACTTCAGAGAATAtataaaaactttgtttttggATGAGGATGACTC
GTAGATAAAGACGGTCTGAACAAAACCACTGTCAAAATATGAAAACGCCT
TCTGGTCTTTATAACACCCAACATAATCAATTTCAAAATCTCGTACTTtt
agaatattatcaaaaataattCCCAAATCCAATTTTGGCCGATTCAGGTA
ATCATCTGAAAGTTTTTCACTCTCGATATATAAGAGATCACACAACTTGA
ACTCCTTCAACCGTTTATCATATTCATAGCCAAAACCCTCTTCTGCTCTT
CCACTGGCCCGACGGTTGGCAGATTATTCTCAAAAGCATATATGCATAAC
CTTTGTACCAGTAACAAGCATACCCCGTACAGATAGATAATCTATAAGAT
TATTCATGCCAAGGTCCATTAAGTCTACATGTACCACAGGAAAGAATAGT
CTTATCCCAAGGTCGAAACTTTTAATTTTCCATCCCGGAAAATGCCATGG
GATCGTGAAACAAGTTAAATTCCGTGTTGGAAAAGTTTTAGTTTCCAAGG
TGCGAAATCGTCTAATTCCGACTTGGAAAACAAATTACTAGAAAATTCAA
AGGTTGTATTTCGTCAAAACCCGG Run BLAST on NCBI transcript from alignment at sc0000012:969484..971657 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002026 ID=TCONS_00002026|Name=TCONS_00002026|organism=Clytia hemisphaerica|type=transcript|length=2174bp|location=Sequence derived from alignment at sc0000012:969484..971657 (Clytia hemisphaerica)
CCGGGTTTTGACGAAATACAACCTTTGAATTTTCTAGTAATTTGTTTTCC
AAGTCGGAATTAGACGATTTCGCACCTTGGAAACTAAAACTTTTCCAACA
CGGAATTTAACTTGTTTCACGATCCCATGGCATTTTCCGGGATGGAAAAT
TAAAAGTTTCGACCTTGGGATAAGACTATTCTTTCCTGTGGTACATGTAG
ACTTAATGGACCTTGGCATGAATAATCTTATAGATTATCTATCTGTACGG
GGTATGCTTGTTACTGGTACAAAGGTTATGCATATATGCTTTTGAGAATA
ATCTGCCAACCGTCGGGCCAGTGGAAGAGCAGAAGAGGGTTTTGGCTATG
AATATGATAAACGGTTGAAGGAGTTCAAGTTGTGTGATCTCTTATATATC
GAGAGTGAAAAACTTTCAGATGATTACCTGAATCGGCCAAAATTGGATTT
GGGaattatttttgataatattctaaAAGTACGAGATTTTGAAATTGATT
ATGTTGGGTGTTATAAAGACCAGAAGGCGTTTTCATATTTTGACAGTGGT
TTTGTTCAGACCGTCTTTATCTACGAGTCATCCTCATccaaaaacaaagt
ttttataTATTCTCTGAAGTTCAGGCCTTCACTAACAGTGAGCGACACAA
AACGTTTGTGGATAGCTATTCAGAAAAACACTGTTACCATTTTGACATGT
TGGTGTAGTTGTATGGCTGACGGTAGTAGCCGCTCTTGCAATCGCGTGAT
TGCTGTTATGTATAAACTAGATTATGCTGACCAGAAAGGATATCTCGACC
CTGCCTGTACCGACGTTCCATGTGATTGGAACAAGAAACCAAGAGGGAAA
TCgggccaaaaaaattaaaagacatTGTTATAAGGAAAAAGATCTGCTCA
GatgataagaaaaataatattgatGTCAACCGAAAAGATTTGCGTGCTAA
GGAGCTGCATCAATTTCATCCTGTCCAACCCGCTTTACAAACAACTATTA
CTGATGAATCTGTATCTACCCTTTTTCATGAACTACATATCGTTAGTCCC
TTATCTGTTGTTTTAAAGTGTATTCCCGTTGATGTCCCTTCAAATGTCAA
AGTTATCTGCATTTCCAAAGAAGCTGAAAAAATAGCTCAAAACTTTCCAA
ATTTTCCACTCCaagagaaaatttttaaatttgaacaaaactaTATACTG
ACGCCTTAGATATACTATCAACATGATTGCAACACCAGATTTCAAACTTG
AATTGACATACCACGGAGACATGGCAACACTGTCTTTGGTTGTAGATGTC
CCCGGAGGAGAACGCCCAAAGAGATACATAATTGGAGAATATGGAGAAGA
CTGAAAGAGTTCGGACTTTGGAACATTCGATCACTGGGACAAACTCGACG
ACTTCAACGATGTATTTTTACATTGCCAGCAACGGGACAGTACGGGGATA
CTTGATCGCGGGTGATCATTCACACTACATTGGTGACTTGGACAAGGATG
CAACAGAAAATCACATCCACATCTGATCCAGCTATACACTAAGACGTCAA
CAACTAACTAACATCTTCAACTAACATGCACACACACCTTGTTTATGGTT
GATTTGGTTCGGTCGAAAGACCACAAATctaataaaaaacatgaaaactt
GTGTATTTCCCCCACGAACTTATGTTCAAGTCCTCATATTCCATCCTCTT
AGTATATTTTCGCAGTTTTCCCAgtcaaaaattcagaaaaataatttctt
gctGTTTTTCTAAAGAAACTAAAGAAAAGAAGGATACTGTACACGGGTAC
AAAAAGCGAAACGGGCCTGTACAAGTCGTTGCCAGAAGAACGTGTTGCTT
TGCTCGACGGGGAAGATAGAATCTTTGCACAGCAATGTCTCGATAAATTG
ATGGAAAACAAACACTACTTCCAATTTTATAGCGATGTTCTCGAACAACT
AGTGACAGAAGAAATGCAAATTCCTTATTATAGAGCATTTCGTGTAGAGT
TTATTGAAATTGCAATTTGGCATTTATTATATGTCAAAAACGAATGGTGC
GAAAACGCTATTTCGGGGAACGAGTCTCGATTGTCAATGAAAAGGGCATT
CCATTATAAAGCCATGTCGGGTGTTGTAGACTATGGTTTGGACTACTCTT
TACTTCAATTCCAGTACGACCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002026-exon-sc0000012-1491911889:969484..971657 | TCONS_00002026-exon-sc0000012-1491911889:969484..971657 | Clytia hemisphaerica | exon |
| TCONS_00002026-exon-sc0000012-1510915933:969484..971657 | TCONS_00002026-exon-sc0000012-1510915933:969484..971657 | Clytia hemisphaerica | exon |
| TCONS_00002026-exon-sc0000012-1575043694:969484..971657 | TCONS_00002026-exon-sc0000012-1575043694:969484..971657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:969484..971657 . |
Blast
The following BLAST results are available for this feature:
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