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TCONS_00002025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002025
Unique NameTCONS_00002025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002025 ID=TCONS_00002025|Name=TCONS_00002025|organism=Clytia hemisphaerica|type=transcript|length=1293bp
ATCAACGATTTGTTGTGTTTGTTTTAATTCTGCCATGTCTGCTTCGTTAT
GTGGTTGAGCGTTCGGATATGCGTCTTCCCAAATGGTTGGTATCCAATTG
TTGTCGAGTGATATCTTGACGGTTTCCCACTGATAATTCATCCAACTTTT
TCCGTGGAGGGGGAAGTGAATACATTTTCACCTTGATAGGGGGACTAATG
CAAATGGGGGATTTCAGGAAATCTTATGGGAAGTAGGGGTAGAAGGTGCA
AAGATTAGGTATAATATTACAAATAGATGATCAGAGGTCATCGAGAAACC
AAGCAAAAACTGTTCCGCTCATTTTGTAGGCCCATCTAATTAGCATCAAC
GTCCAAAGTTTCATACTCAATCATGATTCCTGCTTTCTGGATCTTTGCTG
GGGTAGAGCGCTTAAATCTTTATTTCCACTATTCTGGTGGGTCACCATAt
tgacaaattttcaaaaaattgtcatttttctctaaataggactaagaaaa
tcaaaaataccccaaaaactTTATCCCAACGCTGTTGGTTGActtaaagt
gaaaaaaagttcTGGGTTCTATTTTCGGTATTTGCAAAGAATGCTGACGT
CATAAGGttgcgatgacgtcatcattgataccaaaatttACATCAAAGAT
GTCGACTCATATTTGGTGCATACTTACAAAGCTTCAAATCAATTaaacaa
atatttcaaacgttATCAAAAATGTTCGTTTCGGCCGAAGGTTTAACTGT
GTGATTAACGAGAAATGATTTTTACAGCTAGTTTTTGCTTATAGAAAACT
AGTTTGACTCTTTCTGATTGCatttaaatcatttttaagccatcaaaaat
aatttcggCTTGGTTTTAATCCTTGACGTCCCACCAGCGAAATTTTGTTC
TTTCACGAGCTATATTTTCGACTGCCGATAGTCTTGATTGATGACCTAAC
TCAAAAATTTGGCACGATTCAAAGTTTAAGCATTGAGAAATCTTAAAAGC
gcgattttttagctttttgagaACGTCAAGGACTTCAAAAGATTGCTTCT
ATGTTGAATCGAATTCcatcaaaatatgaaaacttAGGCATCAAGTTTTG
ACATTGACGAATAACTATTAATGACTTAAGGCGCGAATAAAGACACAACA
ACTAATCATGTTAAACTTAATTCACTTATACATAGTATTCATCCCAAGAG
GGATGGTGGTGTTGGTATCTTCCACCCTGTCCTTGGCCACCATGACCACC
ACTATGACCGCCTCTATTACCACTACGATTACCACCACGGTGA
Run BLAST on NCBI

transcript from alignment at sc0000012:963073..964365

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002025 ID=TCONS_00002025|Name=TCONS_00002025|organism=Clytia hemisphaerica|type=transcript|length=1293bp|location=Sequence derived from alignment at sc0000012:963073..964365 (Clytia hemisphaerica)
TCACCGTGGTGGTAATCGTAGTGGTAATAGAGGCGGTCATAGTGGTGGTC ATGGTGGCCAAGGACAGGGTGGAAGATACCAACACCACCATCCCTCTTGG GATGAATACTATGTATAAGTGAATTAAGTTTAACATGATTAGTTGTTGTG TCTTTATTCGCGCCTTAAGTCATTAATAGTTATTCGTCAATGTCAAAACT TGATGCCTaagttttcatattttgatgGAATTCGATTCAACATAGAAGCA ATCTTTTGAAGTCCTTGACGTtctcaaaaagctaaaaaatcgcGCTTTTA AGATTTCTCAATGCTTAAACTTTGAATCGTGCCAAATTTTTGAGTTAGGT CATCAATCAAGACTATCGGCAGTCGAAAATATAGCTCGTGAAAGAACAAA ATTTCGCTGGTGGGACGTCAAGGATTAAAACCAAGccgaaattatttttg atggcttaaaaatgatttaaatGCAATCAGAAAGAGTCAAACTAGTTTTC TATAAGCAAAAACTAGCTGTAAAAATCATTTCTCGTTAATCACACAGTTA AACCTTCGGCCGAAACGAACATTTTTGATaacgtttgaaatatttgtttA ATTGATTTGAAGCTTTGTAAGTATGCACCAAATATGAGTCGACATCTTTG ATGTaaattttggtatcaatgatgacgtcatcgcaaCCTTATGACGTCAG CATTCTTTGCAAATACCGAAAATAGAACCCAgaactttttttcactttaa gTCAACCAACAGCGTTGGGATAAagtttttggggtatttttgattttctt agtcctatttagagaaaaatgacaattttttgaaaatttgtcaaTATGGT GACCCACCAGAATAGTGGAAATAAAGATTTAAGCGCTCTACCCCAGCAAA GATCCAGAAAGCAGGAATCATGATTGAGTATGAAACTTTGGACGTTGATG CTAATTAGATGGGCCTACAAAATGAGCGGAACAGTTTTTGCTTGGTTTCT CGATGACCTCTGATCATCTATTTGTAATATTATACCTAATCTTTGCACCT TCTACCCCTACTTCCCATAAGATTTCCTGAAATCCCCCATTTGCATTAGT CCCCCTATCAAGGTGAAAATGTATTCACTTCCCCCTCCACGGAAAAAGTT GGATGAATTATCAGTGGGAAACCGTCAAGATATCACTCGACAACAATTGG ATACCAACCATTTGGGAAGACGCATATCCGAACGCTCAACCACATAACGA AGCAGACATGGCAGAATTAAAACAAACACAACAAATCGTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001063XLOC_001063Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002025-exon-sc0000012-1491911889:963073..964365TCONS_00002025-exon-sc0000012-1491911889:963073..964365Clytia hemisphaericaexon
TCONS_00002025-exon-sc0000012-1510915933:963073..964365TCONS_00002025-exon-sc0000012-1510915933:963073..964365Clytia hemisphaericaexon
TCONS_00002025-exon-sc0000012-1575043694:963073..964365TCONS_00002025-exon-sc0000012-1575043694:963073..964365Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:963073..964365 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.294557 0.223408 0.296455 0.181272 1.27995 0.627787 0.504933 0.630282 0.193058 0.580753 0.397901 0.392347 0.326501 0.497309 0.216633 0.299158 0.466815 0.377739 0.452285 0.691723 0.854383 0.694563 0.150104 0.238815 0.316253 0.501774 0.269264 0.526837 0.290609 0.62918
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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