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TCONS_00002022 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002022
Unique NameTCONS_00002022
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002022 ID=TCONS_00002022|Name=TCONS_00002022|organism=Clytia hemisphaerica|type=transcript|length=1271bp
gttttcttcattttaatgatgtTTTAATTATTGAAGTTTCTTCTTGAATG
ATGTGATTGAATTGTAGTTTAATTTGACAGGCAGAGACAATTTCAAAGGA
TTAATACTGAAATTTCGATGACACTGTATGCTATTAAATGAAGATCaatt
tctaaattaaaaaagGACTGATATTATTTTGGGAAATGGCAATCATCTGT
TGTACTATAATTAgaatataaaagatatatttgtcTCAACAAGGGCTTGT
TATAATTATCGTGTTTGTCACAATAAAGTTACAGTATTATACTAAAATTA
TATGACTAAAGAGGGTACCGATACTTTTGTCTTTGAGAGCTTTTTATCTT
CTTCATAGGGCTGTAAGATAATGTCTTGACCATTAGTAGTATTTTGACAT
CAGTGTGATAAATATCTAAATCTCAGTGTTCAAAAGTTTTTACGAGTCAG
CAGTTGTAGACCAATAAATCTATTTACTTTATCATTATTTGAGATAGAAT
TTCCAATCGGAAGGGATCAGCAAATAACTCGAGTTTACAACTCTTCTCAC
CTTCTCTCTCATCGACCCTTGGGAAGTCATAATAAAACATGCTATTTGTA
ATTCGCACCTCAACTTTATTGGATATGTCTTGAAATAGAAATGACAGTCA
ATtgtaaaagaaagaaattttctttttgatttacaATAGGAATATTTGGA
ATTTTTCAATCGTCTGGTGATTGTTTTATATCTGAAATTGAAGATTATGG
CTTTACTCAGAAACGGTTTCGTAAGTGTGACACTAATTTGAAGTAACTCA
TATTTGTATTCAAATGTAAGCTATTTGTTAGTCATCGAGTCTTTGTGATG
TGTTTGTAATACACAACACTAGTAATTTCAATGGAAATAATTGACAAGTG
TTTCTTTTTTGCTGTAAAGTTGAAAATAGCAGATTTTATCATTTcaacta
tttttaaaaatagtaaATGTTACCATAGAATCTAAGTAAGTCGGAAACTc
taagaacaaaagaaattgaaaaacaggAAATGCATAATAGCCTCTTACAA
TTACTTGATCACAACAGAATAGAAATGAGTGTTCAAAAGTTACAACAGAA
GTGCtagaaacaaagaaataatTAGAATAGAAATGCCacaatgagaaaat
tttaatcACCCCTGATTTTAAAGTTCCACTAAAACCTTAGGTTTGGGATA
AATAAAGCATCAAACTAAAATACCATGAATATGAACGGATTAGAATTTCA
CACTTTATTCAAAGACTTGCT
Run BLAST on NCBI

transcript from alignment at sc0000012:859087..860357

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002022 ID=TCONS_00002022|Name=TCONS_00002022|organism=Clytia hemisphaerica|type=transcript|length=1271bp|location=Sequence derived from alignment at sc0000012:859087..860357 (Clytia hemisphaerica)
AGCAAGTCTTTGAATAAAGTGTGAAATTCTAATCCGTTCATATTCATGGT ATTTTAGTTTGATGCTTTATTTATCCCAAACCTAAGGTTTTAGTGGAACT TTAAAATCAGGGGTgattaaaattttctcattgtGGCATTTCTATTCTAa ttatttctttgtttctaGCACTTCTGTTGTAACTTTTGAACACTCATTTC TATTCTGTTGTGATCAAGTAATTGTAAGAGGCTATTATGCATTTcctgtt tttcaatttcttttgttcttagAGTTTCCGACTTACTTAGATTCTATGGT AACATttactatttttaaaaatagttgAAATGATAAAATCTGCTATTTTC AACTTTACAGCAAAAAAGAAACACTTGTCAATTATTTCCATTGAAATTAC TAGTGTTGTGTATTACAAACACATCACAAAGACTCGATGACTAACAAATA GCTTACATTTGAATACAAATATGAGTTACTTCAAATTAGTGTCACACTTA CGAAACCGTTTCTGAGTAAAGCCATAATCTTCAATTTCAGATATAAAACA ATCACCAGACGATTGAAAAATTCCAAATATTCCTATtgtaaatcaaaaag aaaatttctttcttttacaATTGACTGTCATTTCTATTTCAAGACATATC CAATAAAGTTGAGGTGCGAATTACAAATAGCATGTTTTATTATGACTTCC CAAGGGTCGATGAGAGAGAAGGTGAGAAGAGTTGTAAACTCGAGTTATTT GCTGATCCCTTCCGATTGGAAATTCTATCTCAAATAATGATAAAGTAAAT AGATTTATTGGTCTACAACTGCTGACTCGTAAAAACTTTTGAACACTGAG ATTTAGATATTTATCACACTGATGTCAAAATACTACTAATGGTCAAGACA TTATCTTACAGCCCTATGAAGAAGATAAAAAGCTCTCAAAGACAAAAGTA TCGGTACCCTCTTTAGTCATATAATTTTAGTATAATACTGTAACTTTATT GTGACAAACACGATAATTATAACAAGCCCTTGTTGAgacaaatatatctt ttatattcTAATTATAGTACAACAGATGATTGCCATTTCCCAAAATAATA TCAGTCcttttttaatttagaaattGATCTTCATTTAATAGCATACAGTG TCATCGAAATTTCAGTATTAATCCTTTGAAATTGTCTCTGCCTGTCAAAT TAAACTACAATTCAATCACATCATTCAAGAAGAAACTTCAATAATTAAAa catcattaaaatgaagaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001060XLOC_001060Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002022-exon-sc0000012-1491911889:859087..860357TCONS_00002022-exon-sc0000012-1491911889:859087..860357Clytia hemisphaericaexon
TCONS_00002022-exon-sc0000012-1510915933:859087..860357TCONS_00002022-exon-sc0000012-1510915933:859087..860357Clytia hemisphaericaexon
TCONS_00002022-exon-sc0000012-1575043694:859087..860357TCONS_00002022-exon-sc0000012-1575043694:859087..860357Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:859087..860357 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.0378246 0 0.540607 0.106799 0.0858988 0.241252 0.253359 0.209218 0.270762 1.04568 0.399917 0.184586 0.151755 0.101785 0.0752345 0.0257043 0.0355119 0.0371606 0.0322993 0.0472635 0 0 0 0 0.045807 0 0.0370787 0.0755546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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