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TCONS_00002021 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002021
Unique NameTCONS_00002021
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002021 ID=TCONS_00002021|Name=TCONS_00002021|organism=Clytia hemisphaerica|type=transcript|length=645bp
GAAATACGGGCCATGTTTTCGAAGATAATTAGTGGTTTTGAGGGATAACT
ACTTCCGTGTGAAGAAGGATGAAAGTTTGTTTTCAATCATAAGCTCGAGA
TCATAAGAAAATTCCAAAAGAATTTCATAAGTTaacaatagctttaaaaa
gacCTTTGAATCGATAATTTAACGGTCCGTTTAGTGGTTGACCATAGAGT
TTTGCAAATTGATGAGGACCTCATTTTAAAGCCTGATTGTAACTGTAAGC
ACCACCTTTTTCCACTCAAAAGTCGTTTGGACTTCCTTGCATTGTCAGCT
AACAATCAGAACTCTTCcatatttaattgtttctttttcaaaacaaaaag
caatTTCCCGTAGCTAAAGAGaccacaaaatcaaaatatatgcAATTTAC
GGGAAGTAATTTATGGGTCGACATCAATAGCCCCACCAAAACATTCGTGA
GCTTCATTTAAATGATTTGTTAGGATATCTAGTTTGttcttgaaaatata
tttttgtgtgCAAAAATGTTAATTGTAAAAGATCAGCAGCGAGTTAATCA
CTTACATGAGTATAGCTGGTATTAGTATAGTGCTGTTCGCAAAGGTTGTC
AGGTTGGTTATAGTTAATTTTCAATAGATTTTTGATCAATTTGCT
Run BLAST on NCBI

transcript from alignment at sc0000012:853264..853908

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002021 ID=TCONS_00002021|Name=TCONS_00002021|organism=Clytia hemisphaerica|type=transcript|length=645bp|location=Sequence derived from alignment at sc0000012:853264..853908 (Clytia hemisphaerica)
AGCAAATTGATCAAAAATCTATTGAAAATTAACTATAACCAACCTGACAA CCTTTGCGAACAGCACTATACTAATACCAGCTATACTCATGTAAGTGATT AACTCGCTGCTGATCTTTTACAATTAACATTTTTGcacacaaaaatatat tttcaagaaCAAACTAGATATCCTAACAAATCATTTAAATGAAGCTCACG AATGTTTTGGTGGGGCTATTGATGTCGACCCATAAATTACTTCCCGTAAA TTgcatatattttgattttgtggtCTCTTTAGCTACGGGAAattgctttt tgttttgaaaaagaaacaattaaatatgGAAGAGTTCTGATTGTTAGCTG ACAATGCAAGGAAGTCCAAACGACTTTTGAGTGGAAAAAGGTGGTGCTTA CAGTTACAATCAGGCTTTAAAATGAGGTCCTCATCAATTTGCAAAACTCT ATGGTCAACCACTAAACGGACCGTTAAATTATCGATTCAAAGgtcttttt aaagctattgttAACTTATGAAATTCTTTTGGAATTTTCTTATGATCTCG AGCTTATGATTGAAAACAAACTTTCATCCTTCTTCACACGGAAGTAGTTA TCCCTCAAAACCACTAATTATCTTCGAAAACATGGCCCGTATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001059XLOC_001059Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002021-exon-sc0000012-1491911889:853264..853908TCONS_00002021-exon-sc0000012-1491911889:853264..853908Clytia hemisphaericaexon
TCONS_00002021-exon-sc0000012-1510915933:853264..853908TCONS_00002021-exon-sc0000012-1510915933:853264..853908Clytia hemisphaericaexon
TCONS_00002021-exon-sc0000012-1575043694:853264..853908TCONS_00002021-exon-sc0000012-1575043694:853264..853908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:853264..853908 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0.346851 0.104615 0.0979395 0.754267 0.254804 0 0.650311 0.270586 0.112403 0.462051 0 0 0 0 0.18103 0 0 0 0 0.349458 0.0779706 0 0.119077 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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