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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002020 ID=TCONS_00002020|Name=TCONS_00002020|organism=Clytia hemisphaerica|type=transcript|length=859bp GGATACCGGTTGTCAGCGACGTCTACAATTCAGTGTTTTTCTTCATCGCT GCTACATTGAGCTTTTTCATCCCTTGTATATTAGTACTTGTCTCCTATGG TTTTATTCTGGTATCAGCGTTAAAGAATatgaaaatggaaaagaaaatca GCAAAGTTATTGTCGTTATATCCACAATGGATCAAGAGAATCTGGAAAAA GTTGCATCAATGAGACCAGCAAGGTTTCGAGAAATCAAGATCGCTTTTAA CGTGGCAATAATGACAGTTCCTTTTGTTTGCGGATGGGGTTATTTCATGA CGTGTAATACTTATGAAATTGTAGCTGGCAAGGATATTACCGGTTTTCAA AATTGGTTAATCCCTTTCGTACCGTTCGTAATTTCATGTTTAAATCCATT GACTTATTTAATGTTCACTCGATCCTTGAGGAAGAGTTCATTAATGCTAC TTTCAAGatcaaaattatgtaaaaaactGACGCAGTCTTTTATTAGACGC GAGAGTGAATTAACGAGTATGTCTTTCGTGATAAACGATCGGTCAAGCAA CAGTATGGTCGAGACAGCTTCGAGAAGACATTCTGAAAATCTATTAGACG GTGATGGCAAAAAGGAGACCACGAATGAATCTCCAGAGAAACAAACTTTA ATTGAACGTGAAGATTTAGATAAAGGCGTTAATGTATAATGCACgtagat tttatttcaattccAATAATTCTAATATACTACTCTCTGATTCTGAAGGG TAAACTTTGGTGAGTTGAAAAACTTGTAGGGCGTGAGATTAAAATCTTAC GAATTTACTTCTATTATTACCTCTAAGAATTATAGTCATTACTTTATCTA CGATCGCga Run BLAST on NCBI protein sequence of TCONS_00002020-protein >TCONS_00002020-protein ID=TCONS_00002020-protein|Name=TCONS_00002020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
IPVVSDVYNSVFFFIAATLSFFIPCILVLVSYGFILVSALKNMKMEKKIS KVIVVISTMDQENLEKVASMRPARFREIKIAFNVAIMTVPFVCGWGYFMT CNTYEIVAGKDITGFQNWLIPFVPFVISCLNPLTYLMFTRSLRKSSLMLL SRSKLCKKLTQSFIRRESELTSMSFVINDRSSNSMVETASRRHSENLLDG DGKKETTNESPEKQTLIEREDLDKGVNV Run BLAST on NCBI transcript from alignment at sc0000012:850244..851102 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002020 ID=TCONS_00002020|Name=TCONS_00002020|organism=Clytia hemisphaerica|type=transcript|length=859bp|location=Sequence derived from alignment at sc0000012:850244..851102 (Clytia hemisphaerica) tcGCGATCGTAGATAAAGTAATGACTATAATTCTTAGAGGTAATAATAGA
AGTAAATTCGTAAGATTTTAATCTCACGCCCTACAAGTTTTTCAACTCAC
CAAAGTTTACCCTTCAGAATCAGAGAGTAGTATATTAGAATTATTggaat
tgaaataaaatctacGTGCATTATACATTAACGCCTTTATCTAAATCTTC
ACGTTCAATTAAAGTTTGTTTCTCTGGAGATTCATTCGTGGTCTCCTTTT
TGCCATCACCGTCTAATAGATTTTCAGAATGTCTTCTCGAAGCTGTCTCG
ACCATACTGTTGCTTGACCGATCGTTTATCACGAAAGACATACTCGTTAA
TTCACTCTCGCGTCTAATAAAAGACTGCGTCagttttttacataattttg
atCTTGAAAGTAGCATTAATGAACTCTTCCTCAAGGATCGAGTGAACATT
AAATAAGTCAATGGATTTAAACATGAAATTACGAACGGTACGAAAGGGAT
TAACCAATTTTGAAAACCGGTAATATCCTTGCCAGCTACAATTTCATAAG
TATTACACGTCATGAAATAACCCCATCCGCAAACAAAAGGAACTGTCATT
ATTGCCACGTTAAAAGCGATCTTGATTTCTCGAAACCTTGCTGGTCTCAT
TGATGCAACTTTTTCCAGATTCTCTTGATCCATTGTGGATATAACGACAA
TAACTTTGCtgattttcttttccattttcatATTCTTTAACGCTGATACC
AGAATAAAACCATAGGAGACAAGTACTAATATACAAGGGATGAAAAAGCT
CAATGTAGCAGCGATGAAGAAAAACACTGAATTGTAGACGTCGCTGACAA
CCGGTATCC Coding sequence (CDS) from alignment at sc0000012:850244..851102 >TCONS_00002020 ID=TCONS_00002020|Name=TCONS_00002020|organism=Clytia hemisphaerica|type=CDS|length=687bp|location=Sequence derived from alignment at sc0000012:850244..851102 (Clytia hemisphaerica) TTATACATTAACGCCTTTATCTAAATCTTCACGTTCAATTAAAGTTTGTT TCTCTGGAGATTCATTCGTGGTCTCCTTTTTGCCATCACCGTCTAATAGA TTTTCAGAATGTCTTCTCGAAGCTGTCTCGACCATACTGTTGCTTGACCG ATCGTTTATCACGAAAGACATACTCGTTAATTCACTCTCGCGTCTAATAA AAGACTGCGTCagttttttacataattttgatCTTGAAAGTAGCATTAAT GAACTCTTCCTCAAGGATCGAGTGAACATTAAATAAGTCAATGGATTTAA ACATGAAATTACGAACGGTACGAAAGGGATTAACCAATTTTGAAAACCGG TAATATCCTTGCCAGCTACAATTTCATAAGTATTACACGTCATGAAATAA CCCCATCCGCAAACAAAAGGAACTGTCATTATTGCCACGTTAAAAGCGAT CTTGATTTCTCGAAACCTTGCTGGTCTCATTGATGCAACTTTTTCCAGAT TCTCTTGATCCATTGTGGATATAACGACAATAACTTTGCtgattttcttt tccattttcatATTCTTTAACGCTGATACCAGAATAAAACCATAGGAGAC AAGTACTAATATACAAGGGATGAAAAAGCTCAATGTAGCAGCGATGAAGA AAAACACTGAATTGTAGACGTCGCTGACAACCGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00002020-exon-sc0000012-1491911889:850244..851102 | TCONS_00002020-exon-sc0000012-1491911889:850244..851102 | Clytia hemisphaerica | exon |
TCONS_00002020-exon-sc0000012-1510915933:850244..851102 | TCONS_00002020-exon-sc0000012-1510915933:850244..851102 | Clytia hemisphaerica | exon |
TCONS_00002020-exon-sc0000012-1575043694:850244..851102 | TCONS_00002020-exon-sc0000012-1575043694:850244..851102 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000012 | supercontig | sc0000012:850244..851102 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
Term | Definition |
GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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