Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00002019 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002019
Unique NameTCONS_00002019
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1584

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002019 ID=TCONS_00002019|Name=TCONS_00002019|organism=Clytia hemisphaerica|type=transcript|length=1584bp
GTTTATTACGGATACCGGTTGTCAGCGACGTCTACAATTCAGTGTTTTTC
TTCATCGCTGCTACATTGAGCTTTTTCATCCCTTGTATATTAGTACTTGT
CTCCTATGGTTTTATTCTGGTATCAGCGTTAAAGAATatgaaaatggaaa
agaaaatcaGCAAAGTTATTGTCGTTATATCCACAATGGATCAAGAGAAT
CTGGAAAAAGTTGCATCAATGAGACCAGCAAGGTTTCGAGAAATCAAGAT
CGCTTTTAACGTGGCAATAATGACAGTTCCTTTTGTTTGCGGATGGGGTT
ATTTCATGACGTGTAATACTTATGAAATTGTAGCTGGCAAGGATATTACC
GGTTTTCAAAATTGGTTAATCCCTTTCGTACCGTTCGTAATTTCATGTTT
AAATCCATTGACTTATTTAATGTTCACTCGATCTCTGAGGAAGAGTTCGC
TGGTATTACTGTCCAGatcaaaattatgtaaaaaactAACACAGTCGCTC
ATCAAACGGGAAGGCGACTTAACAAGTATGTCGTTCGTGATTAACGATCG
GAACAGTCTAGTTGTAGGTGAACCGGCTTCTCAAAGACAATCAGCTAACT
TATCAGACCATAATGATAATGAAAAGAAGCCGTCTGAGTCATGTGAACAG
GATACTCTGATTGAAAAAGTAGAACTTGGAAAAGGTGTTAAAGTATGATG
AGTGAATAGCACTGATCATTATAAATACTGGTTACCGATTAACAAAATAT
TTGGAATTTAGAAATTTGGTAGCCTACCGGTGTAGTACTAATATAATGTA
AGTACTGCTTTTCTTAATGGGATACTGTTataaaaacacccccttctcac
agacccggtaggattttttccgccagtggggatgaaaatagcGGACTAAA
ACTCAGTGGGGATTGgtattctcatattttttatgaatgaggatttcaat
tctttagtTTTTAAGTTAATAAAATTCAGTGGAGATGGGAAAGATAATAA
ATATTTCGCAGCGAggtttggtttatttgatttttttcggtGGGGACAAA
AAatagaggataattttccaccggggacaatattttggcgaatttttcca
gtgggaagggttcccagtgggtctgtgagaaggggtgtataaAAGAGTAA
TATCCACCTTAAGAAGTGCTATTATTAGGGTACCAAAGCTCTAaagctcc
gatcaaagatgacaCATATGACATAGGGGTCGATGGTGACCTTGGGATAA
GGTATTTAAAAGCGGAAATTAACACCGTTGTTGATTTCAGTATGCCAATA
AGTGAGGGATTAATTATTAATTTATCCGTTTGCAATGGGAACCATTTTCA
TAATGGGATCAGATTGAATCTCTCGAATGTCGATCAAATTACAGAGGTTT
TTAGTTAAATTTGTAGAGCTTAAGAGATCTTAGGGTCTACAAAATCTAAA
TTAGGTTGCTTTGACTTCTGGGGATATCTTAATATCATATTATTATAAAA
CGCAAGCCAGTATGGCTAATTTATGCTTGAcaatttgtaaataattttaa
aattacaATATTCTTTTTATAATTAAAATCGAAC
Run BLAST on NCBI

protein sequence of TCONS_00002019-protein

>TCONS_00002019-protein ID=TCONS_00002019-protein|Name=TCONS_00002019-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
LLRIPVVSDVYNSVFFFIAATLSFFIPCILVLVSYGFILVSALKNMKMEK
KISKVIVVISTMDQENLEKVASMRPARFREIKIAFNVAIMTVPFVCGWGY
FMTCNTYEIVAGKDITGFQNWLIPFVPFVISCLNPLTYLMFTRSLRKSSL
VLLSRSKLCKKLTQSLIKREGDLTSMSFVINDRNSLVVGEPASQRQSANL
SDHNDNEKKPSESCEQDTLIEKVELGKGVKV
Run BLAST on NCBI

transcript from alignment at sc0000012:841010..842593

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002019 ID=TCONS_00002019|Name=TCONS_00002019|organism=Clytia hemisphaerica|type=transcript|length=1584bp|location=Sequence derived from alignment at sc0000012:841010..842593 (Clytia hemisphaerica)
GTTCGATTTTAATTATAAAAAGAATATtgtaattttaaaattatttacaa attgTCAAGCATAAATTAGCCATACTGGCTTGCGTTTTATAATAATATGA TATTAAGATATCCCCAGAAGTCAAAGCAACCTAATTTAGATTTTGTAGAC CCTAAGATCTCTTAAGCTCTACAAATTTAACTAAAAACCTCTGTAATTTG ATCGACATTCGAGAGATTCAATCTGATCCCATTATGAAAATGGTTCCCAT TGCAAACGGATAAATTAATAATTAATCCCTCACTTATTGGCATACTGAAA TCAACAACGGTGTTAATTTCCGCTTTTAAATACCTTATCCCAAGGTCACC ATCGACCCCTATGTCATATGtgtcatctttgatcggagcttTAGAGCTTT GGTACCCTAATAATAGCACTTCTTAAGGTGGATATTACTCTTttatacac cccttctcacagacccactgggaacccttcccactggaaaaattcgccaa aatattgtccccggtggaaaattatcctctatTTTTTGTCCCCaccgaaa aaaatcaaataaaccaaaccTCGCTGCGAAATATTTATTATCTTTCCCAT CTCCACTGAATTTTATTAACTTAAAAactaaagaattgaaatcctcattc ataaaaaatatgagaatacCAATCCCCACTGAGTTTTAGTCCgctatttt catccccactggcggaaaaaatcctaccgggtctgtgagaagggggtgtt tttatAACAGTATCCCATTAAGAAAAGCAGTACTTACATTATATTAGTAC TACACCGGTAGGCTACCAAATTTCTAAATTCCAAATATTTTGTTAATCGG TAACCAGTATTTATAATGATCAGTGCTATTCACTCATCATACTTTAACAC CTTTTCCAAGTTCTACTTTTTCAATCAGAGTATCCTGTTCACATGACTCA GACGGCTTCTTTTCATTATCATTATGGTCTGATAAGTTAGCTGATTGTCT TTGAGAAGCCGGTTCACCTACAACTAGACTGTTCCGATCGTTAATCACGA ACGACATACTTGTTAAGTCGCCTTCCCGTTTGATGAGCGACTGTGTTagt tttttacataattttgatCTGGACAGTAATACCAGCGAACTCTTCCTCAG AGATCGAGTGAACATTAAATAAGTCAATGGATTTAAACATGAAATTACGA ACGGTACGAAAGGGATTAACCAATTTTGAAAACCGGTAATATCCTTGCCA GCTACAATTTCATAAGTATTACACGTCATGAAATAACCCCATCCGCAAAC AAAAGGAACTGTCATTATTGCCACGTTAAAAGCGATCTTGATTTCTCGAA ACCTTGCTGGTCTCATTGATGCAACTTTTTCCAGATTCTCTTGATCCATT GTGGATATAACGACAATAACTTTGCtgattttcttttccattttcatATT CTTTAACGCTGATACCAGAATAAAACCATAGGAGACAAGTACTAATATAC AAGGGATGAAAAAGCTCAATGTAGCAGCGATGAAGAAAAACACTGAATTG TAGACGTCGCTGACAACCGGTATCCGTAATAAAC

Coding sequence (CDS) from alignment at sc0000012:841010..842593

>TCONS_00002019 ID=TCONS_00002019|Name=TCONS_00002019|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000012:841010..842593 (Clytia hemisphaerica)
TCATACTTTAACACCTTTTCCAAGTTCTACTTTTTCAATCAGAGTATCCT
GTTCACATGACTCAGACGGCTTCTTTTCATTATCATTATGGTCTGATAAG
TTAGCTGATTGTCTTTGAGAAGCCGGTTCACCTACAACTAGACTGTTCCG
ATCGTTAATCACGAACGACATACTTGTTAAGTCGCCTTCCCGTTTGATGA
GCGACTGTGTTagttttttacataattttgatCTGGACAGTAATACCAGC
GAACTCTTCCTCAGAGATCGAGTGAACATTAAATAAGTCAATGGATTTAA
ACATGAAATTACGAACGGTACGAAAGGGATTAACCAATTTTGAAAACCGG
TAATATCCTTGCCAGCTACAATTTCATAAGTATTACACGTCATGAAATAA
CCCCATCCGCAAACAAAAGGAACTGTCATTATTGCCACGTTAAAAGCGAT
CTTGATTTCTCGAAACCTTGCTGGTCTCATTGATGCAACTTTTTCCAGAT
TCTCTTGATCCATTGTGGATATAACGACAATAACTTTGCtgattttcttt
tccattttcatATTCTTTAACGCTGATACCAGAATAAAACCATAGGAGAC
AAGTACTAATATACAAGGGATGAAAAAGCTCAATGTAGCAGCGATGAAGA
AAAACACTGAATTGTAGACGTCGCTGACAACCGGTATCCGTAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001057XLOC_001057Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002019-proteinTCONS_00002019-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002019-exon-sc0000012-1491911889:841010..842593TCONS_00002019-exon-sc0000012-1491911889:841010..842593Clytia hemisphaericaexon
TCONS_00002019-exon-sc0000012-1510915933:841010..842593TCONS_00002019-exon-sc0000012-1510915933:841010..842593Clytia hemisphaericaexon
TCONS_00002019-exon-sc0000012-1575043694:841010..842593TCONS_00002019-exon-sc0000012-1575043694:841010..842593Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:841010..842593 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0506693 0.105562 0.228102 0.156454 0.932942 0.468692 2.38374 2.35557 1.28537 2.19627 2.29475 1.36776 4.75835 5.35703 2.36834 1.51452 0.728293 0.639417 3.05392 1.97877 0.853326 0.667522 0.303248 0.295767 0.292689 0.606768 0.103441 0.0884831 0.032436 0.0971138
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top