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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002018 ID=TCONS_00002018|Name=TCONS_00002018|organism=Clytia hemisphaerica|type=transcript|length=937bp
GGCAAGTATGGCGTCATGGTCGGCGAGTGTTGTATCATGGGTATTTAACC
TATTCTCGTGATCCTTAAGTTCTAAGTCATGTGCAGTAAGTTGGCCGAGa
atttttttggagaaaaacgAAAGAGCATTTAAGACAGTGCTATTTCGGAC
ATCTAAAGTAATGGTTCTTAGTATATTGGTATTGTAATTAACCAGTAAAA
GACCTTTAATGATCACTTCCCCTTCAGTCCAACGAAGGTTGAAATCATGT
GGTGTAATACCCCTCGCATCTCCATGAATGAGGTCATTTCTCCACCTGCG
GGCACGGAGAACGAATGCACCCAAACTCATGTCAGTTGGTGATGGTTCCT
TTTTCCAACCATTTGTAGGCGGTGGTAAATTAGTGAAATCAATTATCAAA
AGTATGATCAAAGTGATATCGAACTTTGAACTATCTGTTTGATTACTACC
AGTAGGTAATAAAAGTTCAATTTGATCTTTGTTTAAAAGTTTCTTTCCTT
TTAGTtggttgattttattttgatgttttttaagtTCTGTGTTTAGAAGA
ACAGGATTTGAGGGGAGTCCAACATAACCAGTCTGATTGTACTTGTTATG
CAAGACATTAAGAAGAGATTCTTTCATTGGCTCATGAAGTAAGGTGGCAA
GACGCAACCAATATTCTATCTCTTGGATAGCCTTTGTGACAGTGATGTAA
GTAGACATTTTGAAAGTTTACTATTAAACTTCGTTCAAATCGTTAAAGTT
TACAAGTTTAAAAAATAGTAATTACAgtacacaggaaaaaaaattagatt
tccaaggttggaaatttcaagttttcttagttggaaaaaagataaaatcc
aatggaaaatccaacctggaaatgtgggacattctccaaggttggaaatt
ttgcattttccatggcttggaattttcaaaaatccag Run BLAST on NCBI protein sequence of TCONS_00002018-protein >TCONS_00002018-protein ID=TCONS_00002018-protein|Name=TCONS_00002018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MSTYITVTKAIQEIEYWLRLATLLHEPMKESLLNVLHNKYNQTGYVGLPS
NPVLLNTELKKHQNKINQLKGKKLLNKDQIELLLPTGSNQTDSSKFDITL
IILLIIDFTNLPPPTNGWKKEPSPTDMSLGAFVLRARRWRNDLIHGDARG
ITPHDFNLRWTEGEVIIKGLLLVNYNTNILRTITLDVRNSTVLNALSFFS
KKILGQLTAHDLELKDHENRLNTHDTTLADHDAILA Run BLAST on NCBI transcript from alignment at sc0000012:810972..811908 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002018 ID=TCONS_00002018|Name=TCONS_00002018|organism=Clytia hemisphaerica|type=transcript|length=937bp|location=Sequence derived from alignment at sc0000012:810972..811908 (Clytia hemisphaerica)
ctggatttttgaaaattccaagccatggaaaatgcaaaatttccaacctt
ggagaatgtcccacatttccaggttggattttccattggattttatcttt
tttccaactaagaaaacttgaaatttccaaccttggaaatctaatttttt
ttcctgtgtacTGTAATTACTATTTTTTAAACTTGTAAACTTTAACGATT
TGAACGAAGTTTAATAGTAAACTTTCAAAATGTCTACTTACATCACTGTC
ACAAAGGCTATCCAAGAGATAGAATATTGGTTGCGTCTTGCCACCTTACT
TCATGAGCCAATGAAAGAATCTCTTCTTAATGTCTTGCATAACAAGTACA
ATCAGACTGGTTATGTTGGACTCCCCTCAAATCCTGTTCTTCTAAACACA
GAacttaaaaaacatcaaaataaaatcaaccaACTAAAAGGAAAGAAACT
TTTAAACAAAGATCAAATTGAACTTTTATTACCTACTGGTAGTAATCAAA
CAGATAGTTCAAAGTTCGATATCACTTTGATCATACTTTTGATAATTGAT
TTCACTAATTTACCACCGCCTACAAATGGTTGGAAAAAGGAACCATCACC
AACTGACATGAGTTTGGGTGCATTCGTTCTCCGTGCCCGCAGGTGGAGAA
ATGACCTCATTCATGGAGATGCGAGGGGTATTACACCACATGATTTCAAC
CTTCGTTGGACTGAAGGGGAAGTGATCATTAAAGGTCTTTTACTGGTTAA
TTACAATACCAATATACTAAGAACCATTACTTTAGATGTCCGAAATAGCA
CTGTCTTAAATGCTCTTTcgtttttctccaaaaaaattCTCGGCCAACTT
ACTGCACATGACTTAGAACTTAAGGATCACGAGAATAGGTTAAATACCCA
TGATACAACACTCGCCGACCATGACGCCATACTTGCC Coding sequence (CDS) from alignment at sc0000012:810972..811908 >TCONS_00002018 ID=TCONS_00002018|Name=TCONS_00002018|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at sc0000012:810972..811908 (Clytia hemisphaerica)
ATGTCTACTTACATCACTGTCACAAAGGCTATCCAAGAGATAGAATATTG
GTTGCGTCTTGCCACCTTACTTCATGAGCCAATGAAAGAATCTCTTCTTA
ATGTCTTGCATAACAAGTACAATCAGACTGGTTATGTTGGACTCCCCTCA
AATCCTGTTCTTCTAAACACAGAacttaaaaaacatcaaaataaaatcaa
ccaACTAAAAGGAAAGAAACTTTTAAACAAAGATCAAATTGAACTTTTAT
TACCTACTGGTAGTAATCAAACAGATAGTTCAAAGTTCGATATCACTTTG
ATCATACTTTTGATAATTGATTTCACTAATTTACCACCGCCTACAAATGG
TTGGAAAAAGGAACCATCACCAACTGACATGAGTTTGGGTGCATTCGTTC
TCCGTGCCCGCAGGTGGAGAAATGACCTCATTCATGGAGATGCGAGGGGT
ATTACACCACATGATTTCAACCTTCGTTGGACTGAAGGGGAAGTGATCAT
TAAAGGTCTTTTACTGGTTAATTACAATACCAATATACTAAGAACCATTA
CTTTAGATGTCCGAAATAGCACTGTCTTAAATGCTCTTTcgtttttctcc
aaaaaaattCTCGGCCAACTTACTGCACATGACTTAGAACTTAAGGATCA
CGAGAATAGGTTAAATACCCATGATACAACACTCGCCGACCATGACGCCA
TACTTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002018-exon-sc0000012-1491911889:810972..811908 | TCONS_00002018-exon-sc0000012-1491911889:810972..811908 | Clytia hemisphaerica | exon |
| TCONS_00002018-exon-sc0000012-1510915933:810972..811908 | TCONS_00002018-exon-sc0000012-1510915933:810972..811908 | Clytia hemisphaerica | exon |
| TCONS_00002018-exon-sc0000012-1575043694:810972..811908 | TCONS_00002018-exon-sc0000012-1575043694:810972..811908 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:810972..811908 . |
Blast
The following BLAST results are available for this feature:
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