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TCONS_00002018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002018
Unique NameTCONS_00002018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length937

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002018 ID=TCONS_00002018|Name=TCONS_00002018|organism=Clytia hemisphaerica|type=transcript|length=937bp
GGCAAGTATGGCGTCATGGTCGGCGAGTGTTGTATCATGGGTATTTAACC
TATTCTCGTGATCCTTAAGTTCTAAGTCATGTGCAGTAAGTTGGCCGAGa
atttttttggagaaaaacgAAAGAGCATTTAAGACAGTGCTATTTCGGAC
ATCTAAAGTAATGGTTCTTAGTATATTGGTATTGTAATTAACCAGTAAAA
GACCTTTAATGATCACTTCCCCTTCAGTCCAACGAAGGTTGAAATCATGT
GGTGTAATACCCCTCGCATCTCCATGAATGAGGTCATTTCTCCACCTGCG
GGCACGGAGAACGAATGCACCCAAACTCATGTCAGTTGGTGATGGTTCCT
TTTTCCAACCATTTGTAGGCGGTGGTAAATTAGTGAAATCAATTATCAAA
AGTATGATCAAAGTGATATCGAACTTTGAACTATCTGTTTGATTACTACC
AGTAGGTAATAAAAGTTCAATTTGATCTTTGTTTAAAAGTTTCTTTCCTT
TTAGTtggttgattttattttgatgttttttaagtTCTGTGTTTAGAAGA
ACAGGATTTGAGGGGAGTCCAACATAACCAGTCTGATTGTACTTGTTATG
CAAGACATTAAGAAGAGATTCTTTCATTGGCTCATGAAGTAAGGTGGCAA
GACGCAACCAATATTCTATCTCTTGGATAGCCTTTGTGACAGTGATGTAA
GTAGACATTTTGAAAGTTTACTATTAAACTTCGTTCAAATCGTTAAAGTT
TACAAGTTTAAAAAATAGTAATTACAgtacacaggaaaaaaaattagatt
tccaaggttggaaatttcaagttttcttagttggaaaaaagataaaatcc
aatggaaaatccaacctggaaatgtgggacattctccaaggttggaaatt
ttgcattttccatggcttggaattttcaaaaatccag
Run BLAST on NCBI

protein sequence of TCONS_00002018-protein

>TCONS_00002018-protein ID=TCONS_00002018-protein|Name=TCONS_00002018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MSTYITVTKAIQEIEYWLRLATLLHEPMKESLLNVLHNKYNQTGYVGLPS
NPVLLNTELKKHQNKINQLKGKKLLNKDQIELLLPTGSNQTDSSKFDITL
IILLIIDFTNLPPPTNGWKKEPSPTDMSLGAFVLRARRWRNDLIHGDARG
ITPHDFNLRWTEGEVIIKGLLLVNYNTNILRTITLDVRNSTVLNALSFFS
KKILGQLTAHDLELKDHENRLNTHDTTLADHDAILA
Run BLAST on NCBI

transcript from alignment at sc0000012:810972..811908

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002018 ID=TCONS_00002018|Name=TCONS_00002018|organism=Clytia hemisphaerica|type=transcript|length=937bp|location=Sequence derived from alignment at sc0000012:810972..811908 (Clytia hemisphaerica)
ctggatttttgaaaattccaagccatggaaaatgcaaaatttccaacctt ggagaatgtcccacatttccaggttggattttccattggattttatcttt tttccaactaagaaaacttgaaatttccaaccttggaaatctaatttttt ttcctgtgtacTGTAATTACTATTTTTTAAACTTGTAAACTTTAACGATT TGAACGAAGTTTAATAGTAAACTTTCAAAATGTCTACTTACATCACTGTC ACAAAGGCTATCCAAGAGATAGAATATTGGTTGCGTCTTGCCACCTTACT TCATGAGCCAATGAAAGAATCTCTTCTTAATGTCTTGCATAACAAGTACA ATCAGACTGGTTATGTTGGACTCCCCTCAAATCCTGTTCTTCTAAACACA GAacttaaaaaacatcaaaataaaatcaaccaACTAAAAGGAAAGAAACT TTTAAACAAAGATCAAATTGAACTTTTATTACCTACTGGTAGTAATCAAA CAGATAGTTCAAAGTTCGATATCACTTTGATCATACTTTTGATAATTGAT TTCACTAATTTACCACCGCCTACAAATGGTTGGAAAAAGGAACCATCACC AACTGACATGAGTTTGGGTGCATTCGTTCTCCGTGCCCGCAGGTGGAGAA ATGACCTCATTCATGGAGATGCGAGGGGTATTACACCACATGATTTCAAC CTTCGTTGGACTGAAGGGGAAGTGATCATTAAAGGTCTTTTACTGGTTAA TTACAATACCAATATACTAAGAACCATTACTTTAGATGTCCGAAATAGCA CTGTCTTAAATGCTCTTTcgtttttctccaaaaaaattCTCGGCCAACTT ACTGCACATGACTTAGAACTTAAGGATCACGAGAATAGGTTAAATACCCA TGATACAACACTCGCCGACCATGACGCCATACTTGCC

Coding sequence (CDS) from alignment at sc0000012:810972..811908

>TCONS_00002018 ID=TCONS_00002018|Name=TCONS_00002018|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at sc0000012:810972..811908 (Clytia hemisphaerica)
ATGTCTACTTACATCACTGTCACAAAGGCTATCCAAGAGATAGAATATTG
GTTGCGTCTTGCCACCTTACTTCATGAGCCAATGAAAGAATCTCTTCTTA
ATGTCTTGCATAACAAGTACAATCAGACTGGTTATGTTGGACTCCCCTCA
AATCCTGTTCTTCTAAACACAGAacttaaaaaacatcaaaataaaatcaa
ccaACTAAAAGGAAAGAAACTTTTAAACAAAGATCAAATTGAACTTTTAT
TACCTACTGGTAGTAATCAAACAGATAGTTCAAAGTTCGATATCACTTTG
ATCATACTTTTGATAATTGATTTCACTAATTTACCACCGCCTACAAATGG
TTGGAAAAAGGAACCATCACCAACTGACATGAGTTTGGGTGCATTCGTTC
TCCGTGCCCGCAGGTGGAGAAATGACCTCATTCATGGAGATGCGAGGGGT
ATTACACCACATGATTTCAACCTTCGTTGGACTGAAGGGGAAGTGATCAT
TAAAGGTCTTTTACTGGTTAATTACAATACCAATATACTAAGAACCATTA
CTTTAGATGTCCGAAATAGCACTGTCTTAAATGCTCTTTcgtttttctcc
aaaaaaattCTCGGCCAACTTACTGCACATGACTTAGAACTTAAGGATCA
CGAGAATAGGTTAAATACCCATGATACAACACTCGCCGACCATGACGCCA
TACTTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001056XLOC_001056Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002018-exon-sc0000012-1491911889:810972..811908TCONS_00002018-exon-sc0000012-1491911889:810972..811908Clytia hemisphaericaexon
TCONS_00002018-exon-sc0000012-1510915933:810972..811908TCONS_00002018-exon-sc0000012-1510915933:810972..811908Clytia hemisphaericaexon
TCONS_00002018-exon-sc0000012-1575043694:810972..811908TCONS_00002018-exon-sc0000012-1575043694:810972..811908Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002018-proteinTCONS_00002018-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:810972..811908 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.843365 0.759358 0.566426 1.00836 1.52324 1.84959 2.97403 3.07374 0.855783 1.21799 1.2797 1.48718 1.81635 2.24612 3.34871 3.80709 1.79325 1.93566 3.83288 2.5744 0.942919 1.67956 1.73439 1.63004 2.30727 3.03284 1.30626 0.914682 3.93528 2.78783
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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