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TCONS_00002017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002017
Unique NameTCONS_00002017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002017 ID=TCONS_00002017|Name=TCONS_00002017|organism=Clytia hemisphaerica|type=transcript|length=834bp
TCATCCTGAGGCTTACCATAATGGAAaactaccctgaaaatttcaagtca
atagcttttctcaatcctgagaaaaggctGACAAGGTGCGCGAAAACCCC
CTAAAACAGGTTTTGAGAAAACGGCgcagaaagttgaaaatataggtttt
tctaaatttttctgcgatacatagaccgttttacaaaatttttgctgtgg
tggaccaaaatggattgacacataacttttaatgttgaaaaggtactgga
aatactaaaatagtccaagttttttgaaaaaaatggccttCCACGTGCTC
CGGAATCTCCAAGTATTTTACGTCAACTCTGCGTACAACGCGTAAACATG
GctttaagtcaataaaagtgcattttctcatcaaaaaaactATTGCCAAC
AAAACATATCATCCTTGTGCTCTCTCAAATCTGTTTATATCATTTACAGT
TGAATTTCAGTGTTGATCTTAGGGAAACGTGTCTTCAGGTTGAATGTCAA
TCATGCATACTTTTACCAGGATCGCCTCTGGCGCCATGAGAGCCATGATT
CATCaaagactagatttccactggaTTTAAGACTCATAATAGATACATCA
TTGAATGTGTTTGGTTCCTTGCTTcaaactttattcaaagtctatagtcc
atcactttgaaaagttttattcGGTGTACAAGTTTTACTGTTCGAAAACA
TCAGTTCGCAGAATCAAATTGTTGCTTTCACTAAAATTATAGGCTTCCAA
AGCTTTCCCAGATgtgagaaatgaaatgaaacattcaataatatcataat
tcaatccaaaacaataCATAAGCTCAGTTTCCAT
Run BLAST on NCBI

transcript from alignment at sc0000012:802158..802991

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002017 ID=TCONS_00002017|Name=TCONS_00002017|organism=Clytia hemisphaerica|type=transcript|length=834bp|location=Sequence derived from alignment at sc0000012:802158..802991 (Clytia hemisphaerica)
ATGGAAACTGAGCTTATGtattgttttggattgaattatgatattattga atgtttcatttcatttctcacATCTGGGAAAGCTTTGGAAGCCTATAATT TTAGTGAAAGCAACAATTTGATTCTGCGAACTGATGTTTTCGAACAGTAA AACTTGTACACCgaataaaacttttcaaagtgatggactatagactttga ataaagtttgAAGCAAGGAACCAAACACATTCAATGATGTATCTATTATG AGTCTTAAAtccagtggaaatctagtctttGATGAATCATGGCTCTCATG GCGCCAGAGGCGATCCTGGTAAAAGTATGCATGATTGACATTCAACCTGA AGACACGTTTCCCTAAGATCAACACTGAAATTCAACTGTAAATGATATAA ACAGATTTGAGAGAGCACAAGGATGATATGTTTTGTTGGCAATagttttt ttgatgagaaaatgcacttttattgacttaaagCCATGTTTACGCGTTGT ACGCAGAGTTGACGTAAAATACTTGGAGATTCCGGAGCACGTGGaaggcc atttttttcaaaaaacttggactattttagtatttccagtaccttttcaa cattaaaagttatgtgtcaatccattttggtccaccacagcaaaaatttt gtaaaacggtctatgtatcgcagaaaaatttagaaaaacctatattttca actttctgcGCCGTTTTCTCAAAACCTGTTTTAGGGGGTTTTCGCGCACC TTGTCagccttttctcaggattgagaaaagctattgacttgaaattttca gggtagttTTCCATTATGGTAAGCCTCAGGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001055XLOC_001055Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002017-exon-sc0000012-1491911889:802158..802991TCONS_00002017-exon-sc0000012-1491911889:802158..802991Clytia hemisphaericaexon
TCONS_00002017-exon-sc0000012-1510915933:802158..802991TCONS_00002017-exon-sc0000012-1510915933:802158..802991Clytia hemisphaericaexon
TCONS_00002017-exon-sc0000012-1575043694:802158..802991TCONS_00002017-exon-sc0000012-1575043694:802158..802991Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:802158..802991 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.30222 2.77495 2.38003 0.993213 30.1038 24.4001 23.1384 28.2648 7.26796 15.0728 16.3138 10.8314 10.3606 8.66691 4.48971 5.60635 3.90472 4.36063 5.32234 7.27862 8.46746 5.89276 3.54579 4.78425 7.36349 9.88901 14.8941 8.17782 7.65003 6.9917
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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