TCONS_00002016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002016
Unique NameTCONS_00002016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002016 ID=TCONS_00002016|Name=TCONS_00002016|organism=Clytia hemisphaerica|type=transcript|length=257bp
GTGATGCTTAGCAAAAAAATTGCAATCCTCTCTGAGAGAAAGGAAACCAA
CAGATCTGTAATTATCAGTAGACCTATTGCGAAATGTAAAATGATGTTTG
CAATCTTTCGAAATGAGTCATTTGGGATTgtctaagcaaagaaaaagcaa
agaaaaggaAATTCTCTACTACGGTATGGTTATTGAAACTCGTGCCAACA
GAAAGTTGCTATTTCAGGCAACAATTTTTTTCCGCCAAACTGTTTCCATT
GGCAATT
Run BLAST on NCBI

transcript from alignment at sc0000012:786250..786506

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002016 ID=TCONS_00002016|Name=TCONS_00002016|organism=Clytia hemisphaerica|type=transcript|length=257bp|location=Sequence derived from alignment at sc0000012:786250..786506 (Clytia hemisphaerica)
AATTGCCAATGGAAACAGTTTGGCGGAAAAAAATTGTTGCCTGAAATAGC AACTTTCTGTTGGCACGAGTTTCAATAACCATACCGTAGTAGAGAATTtc cttttctttgctttttctttgcttagacAATCCCAAATGACTCATTTCGA AAGATTGCAAACATCATTTTACATTTCGCAATAGGTCTACTGATAATTAC AGATCTGTTGGTTTCCTTTCTCTCAGAGAGGATTGCAATTTTTTTGCTAA GCATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001054XLOC_001054Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002016-exon-sc0000012-1491911889:786250..786506TCONS_00002016-exon-sc0000012-1491911889:786250..786506Clytia hemisphaericaexon
TCONS_00002016-exon-sc0000012-1510915933:786250..786506TCONS_00002016-exon-sc0000012-1510915933:786250..786506Clytia hemisphaericaexon
TCONS_00002016-exon-sc0000012-1575043694:786250..786506TCONS_00002016-exon-sc0000012-1575043694:786250..786506Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:786250..786506 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.687259 0 0.77815 0 0 0 0 0.827197 0.57914 0 0 0 0.914149 0 0.780497 0.837593 1.03185 1.05761 0 0 1.32896 0 0 0 2.21364 0.65854 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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