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TCONS_00002011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002011
Unique NameTCONS_00002011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2090

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002011 ID=TCONS_00002011|Name=TCONS_00002011|organism=Clytia hemisphaerica|type=transcript|length=2090bp
ctccctagagaatttaaagtgcaaacccatgtttccaaaactttcctagc
caacccagggcagcaaaacagaaattaataaaaagatctaaaaccattta
aaacatccaaaggttACCCTAAAGTCCATAAACAAGTTTGTATGTATCAC
CAAAAATGCAACAATATGGTGGAAATCAAcgaaaattctaacaaggaaat
tcaacaaaattatgGATATTGCACACCCAATAACTGTTTAACAAACACCA
TCATAGCAGATAAAGACACCTTACAATGTAGGAAATGTGATAGACTTGTC
CATTATGCTTGCTCTGAGCTCCCGGCCTATAAGATTCAGCTTTGTCTGCA
ATATAAAAGCCGGCGCTTCGAATGTGGAAATTGTGTTACAATAACGCCAC
TCTTACCTGAGAGGATTCAAACAAGCAGACAAAAAGCTCGCAGTAACATC
ACAACGAAAGAAGCAGATAAAGATGAACATCATGAGTTGAAATTAGGTTT
CTAGAAAGGAAAGTCGAGAAgctaatgaataaaaaagacGTCAACAAAGA
ACGGAACAACAAACGCAGAAATAAATAACACAATCATATGCAGAAGTCAC
CAAAGAAGATCTACAAAAACAAGAGGTGACCAtaaaaagtttcatcaaat
cAGTGAACGAAGAGGAGCGTTGGCTCAAATCAACCAAGTGCAACATCACG
GTGCATGATTTAGGTGAAAACAAGCACGAAAACAAAGAAGAGCAACGAGT
TGGCAACAAAGATTTTATATAAAGAATACTGAAACAACAAATGGGTTTCG
ATGTGACGATAATCAAGGTAGAAGGCATAGGTGCTCGTAAAGATGAAATG
TATACAAATGAACGATGGAGACCATTAAAAGTTACTCTCGAGAGTGAAGA
AGAAAGGATTAGAATACTTGCATCAGCCCACAAACTAGATAAAGTTGATT
TCAGAGTAtcagacgatttttcaaggaaagaacgcaagataataaaacaa
tagcatcataaagcaaaagaaaaaacatcgaaagaaaaagacaagagtca
taatatggaaagtgagaggtagtcctaggactaaactctgtttaaagaaa
tttacgacgGAAACAACATGATTGTAAGAAGAGTCGGTTAGAGGCCCAGG
TGTCTAACTGTAAGACTCTAAACAAACAGAATTGACAAACTATtggaatg
ataagatctataaattgtaaagatgtaagattgtttcataggggtcaata
gacctgagaaatacacttctataaataaatatatccaaccatgttttctt
ggaaaatgaacttgcgtctgttttcttctttttcatattttcatgtaaca
gaaagctgtaTCTTCACAAGTGGAGGATTATcctatttttgtttcagaat
tgctccgcgccATGTAGATCGGCCCTTACGATTTTAGCAATGTGAGTGCA
AGCAAGCAGACTGCATTCTGATTTGAGAAgacaaatcgctctagggagac
caggctgtaaaccagaacataaaatattgaaaactaGACTGtcaaatagt
ttacagcctggatatccaggctataatCATATGTACaataatgattgaaa
aatttgaaatttgacgtaaaaagttaaaaagcgagataggaataatatga
taGTTGGAATAACTAattgaaaaaggatttttcctctctgaccactaagc
aaagaaaaatatttttgacatttctattattttcagcTCTTTAAGGGTGT
CAGAATAAgatagacgagggatgtcgacattagaccaagttatgcCCTAC
ATGTCAAGATGAAAACATTAATTTCCCTCACACAAATGAAACAGATGAAG
CTCCAATAAGGAATTCACCTACACAGATCACTAAAGCTGCTAACGCCACT
GAATCCCTTCAAATAAAACCCAACCCACTCCAAGAAATACACTCCTTTGC
ATTCCAATCACTCAAGATTTTAATAATGACAAACAATTTTTACTCAAATA
ATATACctccaaaaatgttttcatcCAAGAAGAGATCCAAACCAAGAGAC
ATGGGAATTCTTATATGTAAaagaaagaaactgaaaaaag
Run BLAST on NCBI

protein sequence of TCONS_00002011-protein

>TCONS_00002011-protein ID=TCONS_00002011-protein|Name=TCONS_00002011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MYHQKCNNMVEINENSNKEIQQNYGYCTPNNCLTNTIIADKDTLQCRKCD
RLVHYACSELPAYKIQLCLQYKSRRFECGNCVTITPLLPERIQTSRQKAR
SNITTKEADKDEHHELKLGF
Run BLAST on NCBI

transcript from alignment at sc0000012:642528..644617

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002011 ID=TCONS_00002011|Name=TCONS_00002011|organism=Clytia hemisphaerica|type=transcript|length=2090bp|location=Sequence derived from alignment at sc0000012:642528..644617 (Clytia hemisphaerica)
cttttttcagtttctttcttTTACATATAAGAATTCCCATGTCTCTTGGT TTGGATCTCTTCTTGgatgaaaacatttttggagGTATATTATTTGAGTA AAAATTGTTTGTCATTATTAAAATCTTGAGTGATTGGAATGCAAAGGAGT GTATTTCTTGGAGTGGGTTGGGTTTTATTTGAAGGGATTCAGTGGCGTTA GCAGCTTTAGTGATCTGTGTAGGTGAATTCCTTATTGGAGCTTCATCTGT TTCATTTGTGTGAGGGAAATTAATGTTTTCATCTTGACATGTAGGgcata acttggtctaatgtcgacatccctcgtctatcTTATTCTGACACCCTTAA AGAgctgaaaataatagaaatgtcaaaaatatttttctttgcttagtggt cagagaggaaaaatcctttttcaatTAGTTATTCCAACtatcatattatt cctatctcgctttttaactttttacgtcaaatttcaaatttttcaatcat tattGTACATATGattatagcctggatatccaggctgtaaactatttgaC AGTCtagttttcaatattttatgttctggtttacagcctggtctccctag agcgatttgtcTTCTCAAATCAGAATGCAGTCTGCTTGCTTGCACTCACA TTGCTAAAATCGTAAGGGCCGATCTACATggcgcggagcaattctgaaac aaaaataggATAATCCTCCACTTGTGAAGAtacagctttctgttacatga aaatatgaaaaagaagaaaacagacgcaagttcattttccaagaaaacat ggttggatatatttatttatagaagtgtatttctcaggtctattgacccc tatgaaacaatcttacatctttacaatttatagatcttatcattccaATA GTTTGTCAATTCTGTTTGTTTAGAGTCTTACAGTTAGACACCTGGGCCTC TAACCGACTCTTCTTACAATCATGTTGTTTCcgtcgtaaatttctttaaa cagagtttagtcctaggactacctctcactttccatattatgactcttgt ctttttctttcgatgttttttcttttgctttatgatgctattgttttatt atcttgcgttctttccttgaaaaatcgtctgaTACTCTGAAATCAACTTT ATCTAGTTTGTGGGCTGATGCAAGTATTCTAATCCTTTCTTCTTCACTCT CGAGAGTAACTTTTAATGGTCTCCATCGTTCATTTGTATACATTTCATCT TTACGAGCACCTATGCCTTCTACCTTGATTATCGTCACATCGAAACCCAT TTGTTGTTTCAGTATTCTTTATATAAAATCTTTGTTGCCAACTCGTTGCT CTTCTTTGTTTTCGTGCTTGTTTTCACCTAAATCATGCACCGTGATGTTG CACTTGGTTGATTTGAGCCAACGCTCCTCTTCGTTCACTgatttgatgaa actttttaTGGTCACCTCTTGTTTTTGTAGATCTTCTTTGGTGACTTCTG CATATGATTGTGTTATTTATTTCTGCGTTTGTTGTTCCGTTCTTTGTTGA CgtcttttttattcattagcTTCTCGACTTTCCTTTCTAGAAACCTAATT TCAACTCATGATGTTCATCTTTATCTGCTTCTTTCGTTGTGATGTTACTG CGAGCTTTTTGTCTGCTTGTTTGAATCCTCTCAGGTAAGAGTGGCGTTAT TGTAACACAATTTCCACATTCGAAGCGCCGGCTTTTATATTGCAGACAAA GCTGAATCTTATAGGCCGGGAGCTCAGAGCAAGCATAATGGACAAGTCTA TCACATTTCCTACATTGTAAGGTGTCTTTATCTGCTATGATGGTGTTTGT TAAACAGTTATTGGGTGTGCAATATCcataattttgttgaatttccttgt tagaattttcgTTGATTTCCACCATATTGTTGCATTTTTGGTGATACATA CAAACTTGTTTATGGACTTTAGGGTaacctttggatgttttaaatggttt tagatctttttattaatttctgttttgctgccctgggttggctaggaaag ttttggaaacatgggtttgcactttaaattctctagggag

Coding sequence (CDS) from alignment at sc0000012:642528..644617

>TCONS_00002011 ID=TCONS_00002011|Name=TCONS_00002011|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0000012:642528..644617 (Clytia hemisphaerica)
CTAGAAACCTAATTTCAACTCATGATGTTCATCTTTATCTGCTTCTTTCG
TTGTGATGTTACTGCGAGCTTTTTGTCTGCTTGTTTGAATCCTCTCAGGT
AAGAGTGGCGTTATTGTAACACAATTTCCACATTCGAAGCGCCGGCTTTT
ATATTGCAGACAAAGCTGAATCTTATAGGCCGGGAGCTCAGAGCAAGCAT
AATGGACAAGTCTATCACATTTCCTACATTGTAAGGTGTCTTTATCTGCT
ATGATGGTGTTTGTTAAACAGTTATTGGGTGTGCAATATCcataattttg
ttgaatttccttgttagaattttcgTTGATTTCCACCATATTGTTGCATT
TTTGGTGATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001049XLOC_001049Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002011-proteinTCONS_00002011-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002011-exon-sc0000012-1491911889:642528..644617TCONS_00002011-exon-sc0000012-1491911889:642528..644617Clytia hemisphaericaexon
TCONS_00002011-exon-sc0000012-1510915933:642528..644617TCONS_00002011-exon-sc0000012-1510915933:642528..644617Clytia hemisphaericaexon
TCONS_00002011-exon-sc0000012-1575043694:642528..644617TCONS_00002011-exon-sc0000012-1575043694:642528..644617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:642528..644617 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.674229 0.907068 1.44593 1.95217 1.9456 1.75372 2.03984 1.79352 0.86846 1.06302 1.29939 1.15855 1.02716 1.03967 1.03006 0.907352 0.752841 0.793402 0.599673 1.00609 1.4891 1.89652 0.625692 0.737917 1.38178 1.60401 2.53334 2.33695 1.89228 1.65723
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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