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TCONS_00002010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002010
Unique NameTCONS_00002010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002010 ID=TCONS_00002010|Name=TCONS_00002010|organism=Clytia hemisphaerica|type=transcript|length=450bp
GTAATTTGAATAAAACTAGATTTCTAagctttttatgtttttggCAATCC
TAAATATACCATTTCTTTTGAAATGATTGTATGCACGGACCAAAATTGTT
CAATTCCTTACCCAAAGATTTGAGGAATCTTACATAACGTAAAAAAGacg
atttcaaaacaaatcttGATCGTTATTTGCGTACTGTCCCAAATGATCCC
ATTTTCATCATCTACTTTTCATGACCCCTTTCAGATGAAACAGTCAAGAT
TGCCTTTCAAGAACTCTTTGTATCAGTGATCTTGGTCGCGCACCTTCAGC
GGTTTGTAAATTTATAGCAGAAGTAGAAAAATCATATGAAACCTAATTTG
TTATGACTAAGAACACCTATACTTCCAGATTCTTAAGTTCCCGCCTTTCT
GTTATCCTTACCTTCAGGTTTGAGCATTATACTCCTCAATACCCTCGTTT
Run BLAST on NCBI

transcript from alignment at sc0000012:641998..642447

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002010 ID=TCONS_00002010|Name=TCONS_00002010|organism=Clytia hemisphaerica|type=transcript|length=450bp|location=Sequence derived from alignment at sc0000012:641998..642447 (Clytia hemisphaerica)
AAACGAGGGTATTGAGGAGTATAATGCTCAAACCTGAAGGTAAGGATAAC AGAAAGGCGGGAACTTAAGAATCTGGAAGTATAGGTGTTCTTAGTCATAA CAAATTAGGTTTCATATGATTTTTCTACTTCTGCTATAAATTTACAAACC GCTGAAGGTGCGCGACCAAGATCACTGATACAAAGAGTTCTTGAAAGGCA ATCTTGACTGTTTCATCTGAAAGGGGTCATGAAAAGTAGATGATGAAAAT GGGATCATTTGGGACAGTACGCAAATAACGATCaagatttgttttgaaat cgtCTTTTTTACGTTATGTAAGATTCCTCAAATCTTTGGGTAAGGAATTG AACAATTTTGGTCCGTGCATACAATCATTTCAAAAGAAATGGTATATTTA GGATTGccaaaaacataaaaagctTAGAAATCTAGTTTTATTCAAATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001048XLOC_001048Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002010-exon-sc0000012-1491911889:641998..642447TCONS_00002010-exon-sc0000012-1491911889:641998..642447Clytia hemisphaericaexon
TCONS_00002010-exon-sc0000012-1510915933:641998..642447TCONS_00002010-exon-sc0000012-1510915933:641998..642447Clytia hemisphaericaexon
TCONS_00002010-exon-sc0000012-1575043694:641998..642447TCONS_00002010-exon-sc0000012-1575043694:641998..642447Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:641998..642447 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.294421 0.287107 0.166679 0.489209 1.19113 0.627498 0.851761 1.2403 0.248103 0.153658 0.149144 0.725176 0.293715 0.406702 0.417955 0.986766 0.298065 0.339809 0.312976 0.818767 0.996321 1.53331 0.337577 0.358297 0 1.21904 6.55257 6.37384 4.73571 6.1636
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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