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TCONS_00002004 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002004
Unique NameTCONS_00002004
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002004 ID=TCONS_00002004|Name=TCONS_00002004|organism=Clytia hemisphaerica|type=transcript|length=304bp
GAATTCGTCTTTTGAGCCATAATTAGGATCCAACTGTTTGATCACTTTGA
AAGAGTTTCCAAACCATTGTTGGAAAAGGTCAGTATCGTTAAGGGCTTTT
CCTAACAATAGTTTGATCATTGTATCTTGTCCCACTTTGTTGATTCGGTT
GGTGATATCCACTCCTTCCTCAGAGTCTGGTGAATCAACGTCGATTTCCT
TCAATAAACTTTCCATATAGTGAAACACTCTTTCAAGACCATACTCGTTC
GTTCTCTCCTTGAGCAGCGCCATATTGTCGAGATTTTTTGACATCATGGC
TTCG
Run BLAST on NCBI

protein sequence of TCONS_00002004-protein

>TCONS_00002004-protein ID=TCONS_00002004-protein|Name=TCONS_00002004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
EAMMSKNLDNMALLKERTNEYGLERVFHYMESLLKEIDVDSPDSEEGVDI
TNRINKVGQDTMIKLLLGKALNDTDLFQQWFGNSFKVIKQLDPNYGSKDE
F
Run BLAST on NCBI

transcript from alignment at sc0000012:492304..492607

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002004 ID=TCONS_00002004|Name=TCONS_00002004|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at sc0000012:492304..492607 (Clytia hemisphaerica)
CGAAGCCATGATGTCAAAAAATCTCGACAATATGGCGCTGCTCAAGGAGA GAACGAACGAGTATGGTCTTGAAAGAGTGTTTCACTATATGGAAAGTTTA TTGAAGGAAATCGACGTTGATTCACCAGACTCTGAGGAAGGAGTGGATAT CACCAACCGAATCAACAAAGTGGGACAAGATACAATGATCAAACTATTGT TAGGAAAAGCCCTTAACGATACTGACCTTTTCCAACAATGGTTTGGAAAC TCTTTCAAAGTGATCAAACAGTTGGATCCTAATTATGGCTCAAAAGACGA ATTC

Coding sequence (CDS) from alignment at sc0000012:492304..492607

>TCONS_00002004 ID=TCONS_00002004|Name=TCONS_00002004|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0000012:492304..492607 (Clytia hemisphaerica)
GAAGCCATGATGTCAAAAAATCTCGACAATATGGCGCTGCTCAAGGAGAG
AACGAACGAGTATGGTCTTGAAAGAGTGTTTCACTATATGGAAAGTTTAT
TGAAGGAAATCGACGTTGATTCACCAGACTCTGAGGAAGGAGTGGATATC
ACCAACCGAATCAACAAAGTGGGACAAGATACAATGATCAAACTATTGTT
AGGAAAAGCCCTTAACGATACTGACCTTTTCCAACAATGGTTTGGAAACT
CTTTCAAAGTGATCAAACAGTTGGATCCTAATTATGGCTCAAAAGACGAA
TTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001042XLOC_001042Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002004-exon-sc0000012-1491911889:492304..492607TCONS_00002004-exon-sc0000012-1491911889:492304..492607Clytia hemisphaericaexon
TCONS_00002004-exon-sc0000012-1510915933:492304..492607TCONS_00002004-exon-sc0000012-1510915933:492304..492607Clytia hemisphaericaexon
TCONS_00002004-exon-sc0000012-1575043694:492304..492607TCONS_00002004-exon-sc0000012-1575043694:492304..492607Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002004-proteinTCONS_00002004-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:492304..492607 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0.628843 0 0 1.24248 1.98521 0.515414 2.1187 2.04632 0 0.861281 0.396635 0.41505 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002004 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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