Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00002002 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002002
Unique NameTCONS_00002002
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length107

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002002 ID=TCONS_00002002|Name=TCONS_00002002|organism=Clytia hemisphaerica|type=transcript|length=107bp
TTTAGACTGAAATGCAAAGAAGATGAAGTTGttttcaacaaaaactctaa
agattttcttttttcttggcGTGGTATCTTTGGTAACCTCTAAAGGTAGT
GAAATAT
Run BLAST on NCBI

transcript from alignment at sc0000012:462157..462263

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002002 ID=TCONS_00002002|Name=TCONS_00002002|organism=Clytia hemisphaerica|type=transcript|length=107bp|location=Sequence derived from alignment at sc0000012:462157..462263 (Clytia hemisphaerica)
ATATTTCACTACCTTTAGAGGTTACCAAAGATACCACgccaagaaaaaag aaaatctttagagtttttgttgaaaaCAACTTCATCTTCTTTGCATTTCA GTCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001040XLOC_001040Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002002-exon-sc0000012-1491911889:462157..462263TCONS_00002002-exon-sc0000012-1491911889:462157..462263Clytia hemisphaericaexon
TCONS_00002002-exon-sc0000012-1510915933:462157..462263TCONS_00002002-exon-sc0000012-1510915933:462157..462263Clytia hemisphaericaexon
TCONS_00002002-exon-sc0000012-1575043694:462157..462263TCONS_00002002-exon-sc0000012-1575043694:462157..462263Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:462157..462263 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002002 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top