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TCONS_00002001 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002001
Unique NameTCONS_00002001
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002001 ID=TCONS_00002001|Name=TCONS_00002001|organism=Clytia hemisphaerica|type=transcript|length=1366bp
CTGGAAATAACAGCAAGGtgttaaatttcttattacaaaaagGGTGGAAA
AGGTGAAAACATCATCACATGGCCttctaaaattgtaaaaacttcaTTAC
TTTATAACTTAAACTCAGaaatttttcagccaaagtaTTTAAGATAACAA
GGGCATGTCAATTTTGTCAACTAagagaacatttttttttaaatttcaat
tgagATCATCCCAAAGTATGTTAGCAGACAATTTGAATAGCTGACAGATT
TTGAAAACTGGAGAGGCCAACTGTGTTTCAtccgaggggggggggctact
taggcaaaatgggtgccgagTATGtgtgagccataagggtcccttttcta
caccctcgaaagtctcttaAAGGGGNATAGCTGACAGATTTTGAAAACTG
GAGAGGCCAACTGTGTTTCATCCGAGGGGGGGggctacttaggcaaaatg
ggtgccgagtatgtgcgagccataagggtcccttttttacaccctcaaaa
gtctctcaaaggggtacaaaaaccttttaaaagaaaattgagtctctata
agggtccaaaaatcacgaaaatcaacaattttgaGAAAAGATGACTTACC
GGTCACCTCACAAACCTAGTACTCTGGGTACGTTTAATTAACTAGAGAGT
TACAAGTCTGCTTAAGAAATTCAAGGAACCTTTCAATAAAATTCTGTTAC
AATTTATAAATCTcaatatatatttataaaaaatagaaaaatatcaagCA
GTCTCACAAAGGATGAGAAAAACCATTTCACTGTAGTGCAATTCGACCCC
GATTGTCTAACCAAAGGGCAGGGCGATAATGCAAGTATCATATTCTTGTC
ATTTCACATTTGTATTCATTGTTCAAAAATGGATCTTTAAAGTTAGCATA
TTATCTTTTAATTCATCTCANTCATTTCACTGTAGTGCAATTCGCCCCCG
ATTGTCTAACCAAAGGGCAGGGCGATAATGCAAGTATCATATTCTTGTCA
TTTCACATTTGTATTCATTGTCCATAAATGGATCTTTAAAGTTAACATTA
TTATCTTTTAATTCATCTCAATCTGTTAGTGTTGTACTGTCACAGTTTCC
TAGCAATATTACTGACTTGCGTTGAAAGATTTctgataaaaatttgattt
agttTTATTCAGTTTCAGAAGCTTGTATCATACACACCAATTgttcacac
aaaaatcatgaaatcatAATAACTGATATCCAGCATTTGTGGCCTTGTTG
GCTAAGATTCTTATTGCGTCATACAANTCTTAATAGAGTTGGAAAATACT
TTTAATTTCATTAGAAAATTAATATGATATACAGGTGCTAAAAGCAGTAA
TAAAGCACTACCACAG
Run BLAST on NCBI

transcript from alignment at sc0000012:447059..448424

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002001 ID=TCONS_00002001|Name=TCONS_00002001|organism=Clytia hemisphaerica|type=transcript|length=1366bp|location=Sequence derived from alignment at sc0000012:447059..448424 (Clytia hemisphaerica)
CTGTGGTAGTGCTTTATTACTGCTTTTAGCACCTGTATATCATATTAATT TTCTAATGAAATTAAAAGTATTTTCCAACTCTATTAAGANTTGTATGACG CAATAAGAATCTTAGCCAACAAGGCCACAAATGCTGGATATCAGTTATTa tgatttcatgatttttgtgtgaacAATTGGTGTGTATGATACAAGCTTCT GAAACTGAATAAaactaaatcaaatttttatcagAAATCTTTCAACGCAA GTCAGTAATATTGCTAGGAAACTGTGACAGTACAACACTAACAGATTGAG ATGAATTAAAAGATAATAATGTTAACTTTAAAGATCCATTTATGGACAAT GAATACAAATGTGAAATGACAAGAATATGATACTTGCATTATCGCCCTGC CCTTTGGTTAGACAATCGGGGGCGAATTGCACTACAGTGAAATGANTGAG ATGAATTAAAAGATAATATGCTAACTTTAAAGATCCATTTTTGAACAATG AATACAAATGTGAAATGACAAGAATATGATACTTGCATTATCGCCCTGCC CTTTGGTTAGACAATCGGGGTCGAATTGCACTACAGTGAAATGGTTTTTC TCATCCTTTGTGAGACTGcttgatatttttctattttttataaatatata ttgAGATTTATAAATTGTAACAGAATTTTATTGAAAGGTTCCTTGAATTT CTTAAGCAGACTTGTAACTCTCTAGTTAATTAAACGTACCCAGAGTACTA GGTTTGTGAGGTGACCGGTAAGTCATCTTTTCtcaaaattgttgattttc gtgatttttggacccttatagagactcaattttcttttaaaaggtttttg tacccctttgagagacttttgagggtgtaaaaaagggacccttatggctc gcacatactcggcacccattttgcctaagtagccCCCCCCCTCGGATGAA ACACAGTTGGCCTCTCCAGTTTTCAAAATCTGTCAGCTATNCCCCTTtaa gagactttcgagggtgtagaaaagggacccttatggctcacaCATActcg gcacccattttgcctaagtagcccccccccctcggaTGAAACACAGTTGG CCTCTCCAGTTTTCAAAATCTGTCAGCTATTCAAATTGTCTGCTAACATA CTTTGGGATGATctcaattgaaatttaaaaaaaaatgttctctTAGTTGA CAAAATTGACATGCCCTTGTTATCTTAAAtactttggctgaaaaatttCT GAGTTTAAGTTATAAAGTAAtgaagtttttacaattttagaaGGCCATGT GATGATGTTTTCACCTTTTCCACCctttttgtaataagaaatttaacaCC TTGCTGTTATTTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001039XLOC_001039Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002001-exon-sc0000012-1491911889:447059..448424TCONS_00002001-exon-sc0000012-1491911889:447059..448424Clytia hemisphaericaexon
TCONS_00002001-exon-sc0000012-1510915933:447059..448424TCONS_00002001-exon-sc0000012-1510915933:447059..448424Clytia hemisphaericaexon
TCONS_00002001-exon-sc0000012-1575043694:447059..448424TCONS_00002001-exon-sc0000012-1575043694:447059..448424Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:447059..448424 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.113966 0.38157 0.192863 0.235291 3.38556 2.25707 4.06693 3.88806 1.62943 1.54976 1.05026 1.01813 0.755569 1.152 0.743821 0.793739 1.06924 0.904609 1.11492 0.660049 1.49027 2.39088 0.45409 1.17982 0.599084 1.31052 1.82208 1.14751 1.05125 1.15041
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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