TCONS_00002000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002000
Unique NameTCONS_00002000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length167

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002000 ID=TCONS_00002000|Name=TCONS_00002000|organism=Clytia hemisphaerica|type=transcript|length=167bp
GACaacataaaaatttattttgattcaaatattTTAGGAATGGTTCTATt
cacaaaaaattatgtttctGATTAAAAATAACAGTTCTCTAGGTAATGGT
ATTGTTAGTTTTTCAGGTACGAAATTATAAAAGTCTTTCGATTTTGCGGA
TTTATAATGCTACTATT
Run BLAST on NCBI

transcript from alignment at sc0000012:443816..443982

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002000 ID=TCONS_00002000|Name=TCONS_00002000|organism=Clytia hemisphaerica|type=transcript|length=167bp|location=Sequence derived from alignment at sc0000012:443816..443982 (Clytia hemisphaerica)
AATAGTAGCATTATAAATCCGCAAAATCGAAAGACTTTTATAATTTCGTA
CCTGAAAAACTAACAATACCATTACCTAGAGAACTGTTATTTTTAATCag
aaacataattttttgtgaATAGAACCATTCCTAAaatatttgaatcaaaa
taaatttttatgttGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001038XLOC_001038Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002000-exon-sc0000012-1491911889:443816..443982TCONS_00002000-exon-sc0000012-1491911889:443816..443982Clytia hemisphaericaexon
TCONS_00002000-exon-sc0000012-1510915933:443816..443982TCONS_00002000-exon-sc0000012-1510915933:443816..443982Clytia hemisphaericaexon
TCONS_00002000-exon-sc0000012-1575043694:443816..443982TCONS_00002000-exon-sc0000012-1575043694:443816..443982Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:443816..443982 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top