Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00001999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001999
Unique NameTCONS_00001999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001999 ID=TCONS_00001999|Name=TCONS_00001999|organism=Clytia hemisphaerica|type=transcript|length=308bp
CTTGCTTTGAAAGATGATTTGTGTTCGCTTATTGATTGTCGACCTTTGCT
TGACAATACAAGTGTTTGTTGAGTGCTTAAGCTCATTTTCTTCGGATAAG
GGTATGCATGTTTCTTATAGTATATTCCTGTTGTTGACGACTGATCTTTG
AGAGCTAAAGGGTTTCCTTCATTAAGACAATGGTTTGCGATATAAGCCTT
GACGTTACATGTTGACGATTTTTCTCGATAGTTATTAGTGCCAGATGATA
AAAGGCCTTTTAGTATAGATTTTACTGTTGTTTTAAATCGTTTATCGTTC
AATATGTA
Run BLAST on NCBI

protein sequence of TCONS_00001999-protein

>TCONS_00001999-protein ID=TCONS_00001999-protein|Name=TCONS_00001999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
YILNDKRFKTTVKSILKGLLSSGTNNYREKSSTCNVKAYIANHCLNEGNP
LALKDQSSTTGIYYKKHAYPYPKKMSLSTQQTLVLSSKGRQSISEHKSSF
KA
Run BLAST on NCBI

transcript from alignment at sc0000012:436507..436814

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001999 ID=TCONS_00001999|Name=TCONS_00001999|organism=Clytia hemisphaerica|type=transcript|length=308bp|location=Sequence derived from alignment at sc0000012:436507..436814 (Clytia hemisphaerica)
TACATATTGAACGATAAACGATTTAAAACAACAGTAAAATCTATACTAAA AGGCCTTTTATCATCTGGCACTAATAACTATCGAGAAAAATCGTCAACAT GTAACGTCAAGGCTTATATCGCAAACCATTGTCTTAATGAAGGAAACCCT TTAGCTCTCAAAGATCAGTCGTCAACAACAGGAATATACTATAAGAAACA TGCATACCCTTATCCGAAGAAAATGAGCTTAAGCACTCAACAAACACTTG TATTGTCAAGCAAAGGTCGACAATCAATAAGCGAACACAAATCATCTTTC AAAGCAAG

Coding sequence (CDS) from alignment at sc0000012:436507..436814

>TCONS_00001999 ID=TCONS_00001999|Name=TCONS_00001999|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0000012:436507..436814 (Clytia hemisphaerica)
TACATATTGAACGATAAACGATTTAAAACAACAGTAAAATCTATACTAAA
AGGCCTTTTATCATCTGGCACTAATAACTATCGAGAAAAATCGTCAACAT
GTAACGTCAAGGCTTATATCGCAAACCATTGTCTTAATGAAGGAAACCCT
TTAGCTCTCAAAGATCAGTCGTCAACAACAGGAATATACTATAAGAAACA
TGCATACCCTTATCCGAAGAAAATGAGCTTAAGCACTCAACAAACACTTG
TATTGTCAAGCAAAGGTCGACAATCAATAAGCGAACACAAATCATCTTTC
AAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001037XLOC_001037Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001999-exon-sc0000012-1491911889:436507..436814TCONS_00001999-exon-sc0000012-1491911889:436507..436814Clytia hemisphaericaexon
TCONS_00001999-exon-sc0000012-1510915933:436507..436814TCONS_00001999-exon-sc0000012-1510915933:436507..436814Clytia hemisphaericaexon
TCONS_00001999-exon-sc0000012-1575043694:436507..436814TCONS_00001999-exon-sc0000012-1575043694:436507..436814Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001999-proteinTCONS_00001999-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:436507..436814 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0.301818 0.747699 0 0.238535 0 0 0 0 0 0 0.380736 0 0.346293 0 0 0 0.769089 0.343197 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top