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TCONS_00001996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001996
Unique NameTCONS_00001996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001996 ID=TCONS_00001996|Name=TCONS_00001996|organism=Clytia hemisphaerica|type=transcript|length=307bp
CTAAAATTTAGTCTATCCTTTTCAAAGTTAAGCTCTAGAGAGTGAGAAAG
TTTTGCCCAGTTAATTGGCTCTCGTGTTTGTAAATATAGTAGTTTGTAGA
TCATTGTGGATATATATTTTATTAGTTATAAAAACCgtgaaaaatagtaa
atatatatataattttttggatgatattattgttattatttaacttatat
tatttttctttctatcaTTCTTTTCGTACTATCGTGTAAGTGTGTAAGTA
TAAAAGTgataaagaactttcaaaaggGCTAATTTTCTATGAAAATGTTG
AAGTTTC
Run BLAST on NCBI

transcript from alignment at sc0000012:397086..397392

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001996 ID=TCONS_00001996|Name=TCONS_00001996|organism=Clytia hemisphaerica|type=transcript|length=307bp|location=Sequence derived from alignment at sc0000012:397086..397392 (Clytia hemisphaerica)
GAAACTTCAACATTTTCATAGAAAATTAGCccttttgaaagttctttatc ACTTTTATACTTACACACTTACACGATAGTACGAAAAGAAtgatagaaag aaaaataatataagttaaataataacaataatatcatccaaaaaattata tatatatttactatttttcacGGTTTTTATAACTAATAAAATATATATCC ACAATGATCTACAAACTACTATATTTACAAACACGAGAGCCAATTAACTG GGCAAAACTTTCTCACTCTCTAGAGCTTAACTTTGAAAAGGATAGACTAA ATTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001034XLOC_001034Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001996-exon-sc0000012-1491911889:397086..397392TCONS_00001996-exon-sc0000012-1491911889:397086..397392Clytia hemisphaericaexon
TCONS_00001996-exon-sc0000012-1510915933:397086..397392TCONS_00001996-exon-sc0000012-1510915933:397086..397392Clytia hemisphaericaexon
TCONS_00001996-exon-sc0000012-1575043694:397086..397392TCONS_00001996-exon-sc0000012-1575043694:397086..397392Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:397086..397392 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0.609752 0 0 0 1.20309 0.499767 0 0 0.81479 1.39189 0.384594 1.20735 1.74901 4.09491 3.3186 0.754272 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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