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TCONS_00001994 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001994
Unique NameTCONS_00001994
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001994 ID=TCONS_00001994|Name=TCONS_00001994|organism=Clytia hemisphaerica|type=transcript|length=472bp
TCCCTTTTaagaagtcgctgcattgaCTCGAGCATTGAAAACACAGACAC
TTTCGAACCTTCGAATCTTTccaatttcgaatgtttacttttttgtgaga
aataaaaatgaaacgttgaatttttcgaaaaagttgaagaggTGTAAGAT
GTTGGTTGAAAAGACTGAAAGAAGAAGCTGAAACTGTAGCAAAGAGAAAG
aacagaagaaagaagatggaaatttttattgtttcatctGGTTTCATTGA
CAAGACAGGCTCAACAGAGTTGTTGTGTCATTTCCAGAAAaggaaagctg
aaaaatgaccTGCATACGTggtgaaaaaaccttttttgcaaAGCGAACAT
ATTCAAGTTATGGATAATCTGGAAGAATTTATCCCTCCTCTTATTCAGTG
GAAAAGAGAACTGATTGTTTGTCGTTGTTCTTGAAATCTTGACTTGGCTG
CTCGAAAATATGTGGGTTCTGG
Run BLAST on NCBI

transcript from alignment at sc0000012:377165..377636

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001994 ID=TCONS_00001994|Name=TCONS_00001994|organism=Clytia hemisphaerica|type=transcript|length=472bp|location=Sequence derived from alignment at sc0000012:377165..377636 (Clytia hemisphaerica)
CCAGAACCCACATATTTTCGAGCAGCCAAGTCAAGATTTCAAGAACAACG ACAAACAATCAGTTCTCTTTTCCACTGAATAAGAGGAGGGATAAATTCTT CCAGATTATCCATAACTTGAATATGTTCGCTttgcaaaaaaggttttttc accACGTATGCAggtcatttttcagctttcctTTTCTGGAAATGACACAA CAACTCTGTTGAGCCTGTCTTGTCAATGAAACCagatgaaacaataaaaa tttccatcttctttcttctgttCTTTCTCTTTGCTACAGTTTCAGCTTCT TCTTTCAGTCTTTTCAACCAACATCTTACAcctcttcaactttttcgaaa aattcaacgtttcatttttatttctcacaaaaaagtaaacattcgaaatt ggAAAGATTCGAAGGTTCGAAAGTGTCTGTGTTTTCAATGCTCGAGtcaa tgcagcgacttcttAAAAGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001032XLOC_001032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001994-exon-sc0000012-1491911889:377165..377636TCONS_00001994-exon-sc0000012-1491911889:377165..377636Clytia hemisphaericaexon
TCONS_00001994-exon-sc0000012-1510915933:377165..377636TCONS_00001994-exon-sc0000012-1510915933:377165..377636Clytia hemisphaericaexon
TCONS_00001994-exon-sc0000012-1575043694:377165..377636TCONS_00001994-exon-sc0000012-1575043694:377165..377636Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:377165..377636 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.0613 1.56867 2.36992 4.02893 0.50488 2.3965 1.31109 0 0.110081 0.311799 0 0.429586 0.701355 0.69755 1.33945 2.17535 2.74576 1.00108 3.13756 1.56035 2.77902 3.38925 0 1.88032 1.38141 1.55599 4.17301 1.4951 2.32071 0.569841
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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