TCONS_00001984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001984
Unique NameTCONS_00001984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001984 ID=TCONS_00001984|Name=TCONS_00001984|organism=Clytia hemisphaerica|type=transcript|length=346bp
TTAGcatgtcctctttctaataaaagtggttttgagtctaaacaagactt
tgttcggcctcagtggctcgccaaacgtccaaagttttttctgctgcACC
CGTACAATTTATAATTCTTATTATAAGGGGGTAACAGAATTTATTAAATA
AGATTGTATCATAATtacttcaatttttcaaaatttttatttattcatcc
tgaaccattttttttcaaaaagtgtatttattgttttttaGAGCTTAATT
TTTAAATGAACTTCTCAATGCACACAACTATAAATCAGAATGTTATTGTT
TTAATCGATAAGGCTTTTGATTATTCGACATAAAATAATGATtggg
Run BLAST on NCBI

transcript from alignment at sc0000012:122647..122992

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001984 ID=TCONS_00001984|Name=TCONS_00001984|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at sc0000012:122647..122992 (Clytia hemisphaerica)
cccaATCATTATTTTATGTCGAATAATCAAAAGCCTTATCGATTAAAACA
ATAACATTCTGATTTATAGTTGTGTGCATTGAGAAGTTCATTTAAAAATT
AAGCTCtaaaaaacaataaatacactttttgaaaaaaaatggttcaggat
gaataaataaaaattttgaaaaattgaagtaATTATGATACAATCTTATT
TAATAAATTCTGTTACCCCCTTATAATAAGAATTATAAATTGTACGGGTg
cagcagaaaaaactttggacgtttggcgagccactgaggccgaacaaagt
cttgtttagactcaaaaccacttttattagaaagaggacatgCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001022XLOC_001022Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001984-exon-sc0000012-1491911889:122647..122992TCONS_00001984-exon-sc0000012-1491911889:122647..122992Clytia hemisphaericaexon
TCONS_00001984-exon-sc0000012-1510915933:122647..122992TCONS_00001984-exon-sc0000012-1510915933:122647..122992Clytia hemisphaericaexon
TCONS_00001984-exon-sc0000012-1575043694:122647..122992TCONS_00001984-exon-sc0000012-1575043694:122647..122992Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:122647..122992 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.34005	0.25933	0.305447	0.29328	3.67028	4.06553	4.21326	5.28367	4.54384	2.21475	2.94063	2.33389	3.62555	1.8323	2.09687	0.843741	1.37524	2.08395	0	1.38216	0.786191	0	1.01372	0.853391	3.38494	6.82457	3.31608	1.35561	3.36475	8.16395
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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