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TCONS_00001983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001983
Unique NameTCONS_00001983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001983 ID=TCONS_00001983|Name=TCONS_00001983|organism=Clytia hemisphaerica|type=transcript|length=252bp
AGGGGGAGttttttgaagccagggtggggaaaaatgagcGGGATGGAATA
ATTTGATTGTAGACATTGGGGGACTCACCAAAACCATATCAACATTGAAA
AAAACTGGTTTTATGAGATGTTGTGATGGATCAAGAATATGGTTATTATT
TTAGTGGTATTCACCATTtaacatagtgtgcagaggggtccagcccccag
catttttcagaGGGCAAAGGAAAATAGCCCAAGCTGAATTCTAGAAACAT
AC
Run BLAST on NCBI

transcript from alignment at sc0000012:10787..11038

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001983 ID=TCONS_00001983|Name=TCONS_00001983|organism=Clytia hemisphaerica|type=transcript|length=252bp|location=Sequence derived from alignment at sc0000012:10787..11038 (Clytia hemisphaerica)
GTATGTTTCTAGAATTCAGCTTGGGCTATTTTCCTTTGCCCtctgaaaaa tgctgggggctggacccctctgcacactatgttaAATGGTGAATACCACT AAAATAATAACCATATTCTTGATCCATCACAACATCTCATAAAACCAGTT TTTTTCAATGTTGATATGGTTTTGGTGAGTCCCCCAATGTCTACAATCAA ATTATTCCATCCCgctcatttttccccaccctggcttcaaaaaaCTCCCC CT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001021XLOC_001021Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001983-exon-sc0000012-1491911889:10787..11038TCONS_00001983-exon-sc0000012-1491911889:10787..11038Clytia hemisphaericaexon
TCONS_00001983-exon-sc0000012-1510915933:10787..11038TCONS_00001983-exon-sc0000012-1510915933:10787..11038Clytia hemisphaericaexon
TCONS_00001983-exon-sc0000012-1575043694:10787..11038TCONS_00001983-exon-sc0000012-1575043694:10787..11038Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:10787..11038 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.72279 0.896291 0 2.14569 0 0.39005 0 0 0 0 0 0 0.13097 0 0.364136 0 0 0 0 0 0.537854 0.925361 0 0 2.71096 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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