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TCONS_00001982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001982
Unique NameTCONS_00001982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length726

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001982 ID=TCONS_00001982|Name=TCONS_00001982|organism=Clytia hemisphaerica|type=transcript|length=726bp
ATTCCATGTCTATTTCTATCCATTAATTtgcataagcctaaaaaagctaa
catcgCAAATATCACAATGTCATTTTGGGTGTATAGATATGCttagtttt
tctttcatttatttcaaccaGCAATATTACATACAGTTTACTTAAATCCC
TTCCAtttattcttgaattagaactaccttAGGGAAAATGATAATCGTTA
AAAATTCGTCAAATTACAACTTTTTATGCTTAGATGGAGCAAGGTAATTT
TCAGAGGCAGGgaatagtgcggaaaggggtctgatcccatTCTTGGCATG
ACTACTGTAACAGAAAACTTTCTTTTGTGAAGGCCTAGGGATCGAATAGA
CAATCTTTTAGTTTTCACAATGTGTTTTTATAAATACACGATGTATTTTC
CACTCTATAGACATAAGCCAAATATTTGCTTGGAGGCTCAACAAGACAAG
AAGCCTCTTAGAAATGTTTTGTGATAAAACTGACTTAGTGAGCTGTAAAG
AATTTAGATATGTTGTATTGTTGTAAACCTCTTAATTACACACTTGACTC
CCAAGGCTGTAAGCCCGCAATTACACAGTTAAAATTTATGCCCatgtgca
attgcacgcttatgatcctgccccggttgaaattgcttgaACAGATTAGA
GGGTtccgatttaaaaaaattgggttAATACATGGTCAAATGAGCTAAAG
CTTTAACATGATTGTTTTGTAGGATA
Run BLAST on NCBI

transcript from alignment at sc0000012:9833..10558

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001982 ID=TCONS_00001982|Name=TCONS_00001982|organism=Clytia hemisphaerica|type=transcript|length=726bp|location=Sequence derived from alignment at sc0000012:9833..10558 (Clytia hemisphaerica)
TATCCTACAAAACAATCATGTTAAAGCTTTAGCTCATTTGACCATGTATT aacccaatttttttaaatcggaACCCTCTAATCTGTtcaagcaatttcaa ccggggcaggatcataagcgtgcaattgcacatGGGCATAAATTTTAACT GTGTAATTGCGGGCTTACAGCCTTGGGAGTCAAGTGTGTAATTAAGAGGT TTACAACAATACAACATATCTAAATTCTTTACAGCTCACTAAGTCAGTTT TATCACAAAACATTTCTAAGAGGCTTCTTGTCTTGTTGAGCCTCCAAGCA AATATTTGGCTTATGTCTATAGAGTGGAAAATACATCGTGTATTTATAAA AACACATTGTGAAAACTAAAAGATTGTCTATTCGATCCCTAGGCCTTCAC AAAAGAAAGTTTTCTGTTACAGTAGTCATGCCAAGAatgggatcagaccc ctttccgcactattcCCTGCCTCTGAAAATTACCTTGCTCCATCTAAGCA TAAAAAGTTGTAATTTGACGAATTTTTAACGATTATCATTTTCCCTaagg tagttctaattcaagaataaaTGGAAGGGATTTAAGTAAACTGTATGTAA TATTGCtggttgaaataaatgaaagaaaaactaaGCATATCTATACACCC AAAATGACATTGTGATATTTGcgatgttagcttttttaggcttatgcaAA TTAATGGATAGAAATAGACATGGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001021XLOC_001021Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001982-exon-sc0000012-1491911889:9833..10558TCONS_00001982-exon-sc0000012-1491911889:9833..10558Clytia hemisphaericaexon
TCONS_00001982-exon-sc0000012-1510915933:9833..10558TCONS_00001982-exon-sc0000012-1510915933:9833..10558Clytia hemisphaericaexon
TCONS_00001982-exon-sc0000012-1575043694:9833..10558TCONS_00001982-exon-sc0000012-1575043694:9833..10558Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:9833..10558 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.784475 0.00496854 0 0.68266 0.183469 0.0491455 0.197376 0 0 0.503195 0.119272 0.230236 0.0717714 0 0 0.386251 0 0.0801805 0 0.362038 0.182658 0.0439765 0 1.89133 0.180235 0 0 0.10834 0.221105
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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