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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001981 ID=TCONS_00001981|Name=TCONS_00001981|organism=Clytia hemisphaerica|type=transcript|length=2539bp
ttccagAATCAAgaaatttgggaaatttttaAGCTGTTATTCTATCTGAT
TCTATCGCCTGTGCAAATATTGCATTTAAAGTCACTTTTCATACTTCAAA
AACACATTTTTGTAGGAGTGGATGAAAAACCATTGTAGGCATGATTGGTA
ATTATCTTGCAAGTTATGAGCAAAGGACCAAATTTTTTAACAGACATTAT
AACGTTCTCCCCCTGGATTCCAGGGAATGGGTTTTGAAACCAAAGGGACT
TACGAGGGGGGAGGGGGAGttttttgaagccagggtggggaaaaatgagc
GGGATGGAATAATTTGATTGTAGACATTGGGGGACTCACCAAAACCATAT
CAACATTGAAAAAAACTGGTTTTATGAGATGTTGTGATGGATCAAGAATA
TGGTTATTATTTTAGTGGTATTCACCATTtaacatagtgtgcagaggggt
ccagcccccagcatttttcagaGGGCAAAGGAAAATAGCCCAAGCTGAAT
TCTAGAAACATACCCCCCCACcttcacaaaacaaaatatcaaagaaattt
tttttcaagagggataaaaccttccccgcagcatagatttttaacataat
ttaaaatatcttgaacctatcagctctgccccCAATTCTATTACACACAC
TCAGCCCCCCTAGCAAGCTGAcccccagtattttttgaaaaataaatgga
aaaatGCAAATGGTTTAGCCCCCCTAAGCTCAGGGAGGTGTATTCCATGT
CTATTTCTATCCATTAATTtgcataagcctaaaaaagctaacatcgCAAA
TATCACAATGTCATTTTGGGTGTATAGATATGCttagtttttctttcatt
tatttcaaccaGCAATATTACATACAGTTTACTTAAATCCCTTCCAttta
ttcttgaattagaactaccttAGGGAAAATGATAATCGTTAAAAATTCGT
CAAATTACAACTTTTTATGCTTAGATGGAGCAAGGTAATTTTCAGAGGCA
GGgaatagtgcggaaaggggtctgatcccatTCTTGGCATGACTACTGTA
ACAGAAAACTTTCTTTTGTGAAGGCCTAGGGATCGAATAGACAATCTTTT
AGTTTTCACAATGTGTTTTTATAAATACACGATGTATTTTCCACTCTATA
GACATAAGCCAAATATTTGCTTGGAGGCTCAACAAGACAAGAAGCCTCTT
AGAAATGTTTTGTGATAAAACTGACTTAGTGAGCTGTAAAGAATTTAGAT
ATGTTGTATTGTTGTAAACCTCTTAATTACACACTTGACTCCCAAGGCTG
TAAGCCCGCAATTACACAGTTAAAATTTATGCCCatgtgcaattgcacgc
ttatgatcctgccccggttgaaattgcttgaACAGATTAGAGGGTtccga
tttaaaaaaattgggttAATACATGGTCAAATGAGCTAAAGCTTTAACAT
GATTGTTTTGTAGGATAAATTTTCAGGCCTGGAATCTTCGAGTcagctaa
attatgacgtcataaaagtgcaaattatgacgtcacgtgaatctaacttg
atttttaattttcaaaaatggatTTTCGAGCTAGAAAGAATTAacttgaa
tttgattttttacataaaaCCAGTCAGCTAAGAACTCAACCAgagtcaaa
attgaaattgctAACTCGAAGATTGCGGGCCTCAAAATTTTTTAGTAAGA
TAGTCCAAGACTTTCTGATTTCAATGAAGCGGTCGGGAGCTAATCAAGTC
TTTTTAAATGATAGACTAGTTCAGGATGAAATTACATGCTTTAACACCCA
TTCAAATAGTGATAAGTATGTAATTGCACCCTTAAAAAATTCTAgctatt
ttctaaattctatgATAGCTAATAATAATCAAAGTTAAGCCGCAATTAAG
AGGATTTCCCATCCCAGACTGAGATGTGTCAAAACAAAAGTGTGTAAATT
AAGCAAGGCTGAATGATTTTCATCCatgaaatgaaaacaaacagGAAATT
ATGCGCAGGTTCAAACAGGAACACAAAAAGCTTTGGAGCTAAGCAAGGTG
TTACTAAAACATATTCTTTCTGctattttcttagaaaaatgggctATTTC
AAAAACCATTACCATTTGGAGAATACCAAAATAGCAGAAATGATCATGTT
TAATGTCATAAAAAGcctttcttataaagttgaatACTACCTCTTAAAGA
AGGGCATCCTGCTAAGTTGGTTTATCAGAGATGCTGTCTCTTCTTGTGCC
GATTTGAATCAATGAAACTTTGGTTTGGAATAGCTGATTTTATGGACAGA
AAAATGGCCTTTTTTGACGTTGGCCTTTCTagaatatttctatttctatt
tggttgagttgcaggaggctttgaggcctatttttgcAAATATAGACACT
TTCAATGAGCGCGCCGTCCGACTACCCAATTCCTCTCACataccagaccc
ccgcgctcgataggatcgatcatcggaacggctcgatgacggatcgatat
gtgatcgatggattacttatcgatccggataggagatcg Run BLAST on NCBI transcript from alignment at sc0000012:8761..11299 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001981 ID=TCONS_00001981|Name=TCONS_00001981|organism=Clytia hemisphaerica|type=transcript|length=2539bp|location=Sequence derived from alignment at sc0000012:8761..11299 (Clytia hemisphaerica)
cgatctcctatccggatcgataagtaatccatcgatcacatatcgatccg
tcatcgagccgttccgatgatcgatcctatcgagcgcgggggtctggtat
GTGAGAGGAATTGGGTAGTCGGACGGCGCGCTCATTGAAAGTGTCTATAT
TTgcaaaaataggcctcaaagcctcctgcaactcaaccaaatagaaatag
aaatattctAGAAAGGCCAACGTCAAAAAAGGCCATTTTTCTGTCCATAA
AATCAGCTATTCCAAACCAAAGTTTCATTGATTCAAATCGGCACAAGAAG
AGACAGCATCTCTGATAAACCAACTTAGCAGGATGCCCTTCTTTAAGAGG
TAGTattcaactttataagaaaggCTTTTTATGACATTAAACATGATCAT
TTCTGCTATTTTGGTATTCTCCAAATGGTAATGGTTTTTGAAATagccca
tttttctaagaaaatagCAGAAAGAATATGTTTTAGTAACACCTTGCTTA
GCTCCAAAGCTTTTTGTGTTCCTGTTTGAACCTGCGCATAATTTCctgtt
tgttttcatttcatGGATGAAAATCATTCAGCCTTGCTTAATTTACACAC
TTTTGTTTTGACACATCTCAGTCTGGGATGGGAAATCCTCTTAATTGCGG
CTTAACTTTGATTATTATTAGCTATcatagaatttagaaaatagcTAGAA
TTTTTTAAGGGTGCAATTACATACTTATCACTATTTGAATGGGTGTTAAA
GCATGTAATTTCATCCTGAACTAGTCTATCATTTAAAAAGACTTGATTAG
CTCCCGACCGCTTCATTGAAATCAGAAAGTCTTGGACTATCTTACTAAAA
AATTTTGAGGCCCGCAATCTTCGAGTTagcaatttcaattttgactcTGG
TTGAGTTCTTAGCTGACTGGttttatgtaaaaaatcaaattcaagtTAAT
TCTTTCTAGCTCGAAAatccatttttgaaaattaaaaatcaagttagatt
cacgtgacgtcataatttgcacttttatgacgtcataatttagctgACTC
GAAGATTCCAGGCCTGAAAATTTATCCTACAAAACAATCATGTTAAAGCT
TTAGCTCATTTGACCATGTATTaacccaatttttttaaatcggaACCCTC
TAATCTGTtcaagcaatttcaaccggggcaggatcataagcgtgcaattg
cacatGGGCATAAATTTTAACTGTGTAATTGCGGGCTTACAGCCTTGGGA
GTCAAGTGTGTAATTAAGAGGTTTACAACAATACAACATATCTAAATTCT
TTACAGCTCACTAAGTCAGTTTTATCACAAAACATTTCTAAGAGGCTTCT
TGTCTTGTTGAGCCTCCAAGCAAATATTTGGCTTATGTCTATAGAGTGGA
AAATACATCGTGTATTTATAAAAACACATTGTGAAAACTAAAAGATTGTC
TATTCGATCCCTAGGCCTTCACAAAAGAAAGTTTTCTGTTACAGTAGTCA
TGCCAAGAatgggatcagacccctttccgcactattcCCTGCCTCTGAAA
ATTACCTTGCTCCATCTAAGCATAAAAAGTTGTAATTTGACGAATTTTTA
ACGATTATCATTTTCCCTaaggtagttctaattcaagaataaaTGGAAGG
GATTTAAGTAAACTGTATGTAATATTGCtggttgaaataaatgaaagaaa
aactaaGCATATCTATACACCCAAAATGACATTGTGATATTTGcgatgtt
agcttttttaggcttatgcaAATTAATGGATAGAAATAGACATGGAATAC
ACCTCCCTGAGCTTAGGGGGGCTAAACCATTTGCatttttccatttattt
ttcaaaaaatactgggggTCAGCTTGCTAGGGGGGCTGAGTGTGTGTAAT
AGAATTGggggcagagctgataggttcaagatattttaaattatgttaaa
aatctatgctgcggggaaggttttatccctcttgaaaaaaaatttctttg
atattttgttttgtgaagGTGGGGGGGTATGTTTCTAGAATTCAGCTTGG
GCTATTTTCCTTTGCCCtctgaaaaatgctgggggctggacccctctgca
cactatgttaAATGGTGAATACCACTAAAATAATAACCATATTCTTGATC
CATCACAACATCTCATAAAACCAGTTTTTTTCAATGTTGATATGGTTTTG
GTGAGTCCCCCAATGTCTACAATCAAATTATTCCATCCCgctcatttttc
cccaccctggcttcaaaaaaCTCCCCCTCCCCCCTCGTAAGTCCCTTTGG
TTTCAAAACCCATTCCCTGGAATCCAGGGGGAGAACGTTATAATGTCTGT
TAAAAAATTTGGTCCTTTGCTCATAACTTGCAAGATAATTACCAATCATG
CCTACAATGGTTTTTCATCCACTCCTACAAAAATGTGTTTTTGAAGTATG
AAAAGTGACTTTAAATGCAATATTTGCACAGGCGATAGAATCAGATAGAA
TAACAGCTtaaaaatttcccaaatttcTTGATTctggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001981-exon-sc0000012-1491911889:8761..11299 | TCONS_00001981-exon-sc0000012-1491911889:8761..11299 | Clytia hemisphaerica | exon |
| TCONS_00001981-exon-sc0000012-1510915933:8761..11299 | TCONS_00001981-exon-sc0000012-1510915933:8761..11299 | Clytia hemisphaerica | exon |
| TCONS_00001981-exon-sc0000012-1575043694:8761..11299 | TCONS_00001981-exon-sc0000012-1575043694:8761..11299 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:8761..11299 . |
Blast
The following BLAST results are available for this feature:
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