TCONS_00001980 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001980
Unique Name	TCONS_00001980
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1815

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000012:1145035..1162739-

transcript sequence

>TCONS_00001980 ID=TCONS_00001980|Name=TCONS_00001980|organism=Clytia hemisphaerica|type=transcript|length=1815bp
cttttagctgtgaaagagtatatttgaactctttcacttcacccacctct
gtccccttttctNAGAATGACTTTACCAGGATTGTCACGCGAAGTATGGT
GTCAACACctcaaatcaaaatcaaagaaaatgttgCTGGTAGTACTGCTA
AAAAACAGaagtCAGAAGACATTGATTTGGCATGTAAGTCTTCCAAAAAC
AAGAAAAGGTTATCGGCTGAGAAGAAGAACTCTATGCCCTCTCCCGAGCT
CAATTCAAGTCTCCAGTTATCACAATGGGGTCTTCCAGAAGTTATACTGG
AGAATTATAAAGCTAAAGGAATCAATAAAATGTTTGAATGGCAAAAAGAA
TGCTTACTACAAGACCAAGTTTTGGATGGTGCTAATTTGATCTATTCTGC
TCCAACGAGTGCTGGTAAAACGTTAGTCGCTGAAATCCTCATGTTGAAAA
GAGTCCTGGAAACAGAGAAGAAAGCCATCTACATCTTACCCTTTGTCAGT
GTGGCGAGAGAGAAGATGTATTCACTAAGGAATCAATTTGAGGAAGCTGG
CATCAATGTGGGTGGATTTATGGGAAACGAGACACCTCCTGGTGGATTAA
CCAACATTGATATCGCTATATGCACCATTGAACGAGCAAACTCTCTGATC
AACCGCCTCATGGAGGAAGACAAGCTATCTCTACTTGGAAGTATTGTTAT
TGATGAAATGCACATGATTGGTGACCCATCACGTGGTTATTTACTTGAAC
TCTTATTGACCAAGATTCGATTTTTAATGGCTAAGAATGCAACCAATGTT
GGTGAAAATAATGAGAGCAGCAGTAACCATGACAATGGGATACAAATCAT
AGGTATGAGTGCTACTTTACCGAATTTAGACATGATGGCGCGATGGTTGG
ATGCAAGGTTCTACGTTACAGATTACAGACCAGTGCCTTTGGATGAATAT
TTGAAAACCTCTAAGACTATTTACGATTGCGCAGATACTGTAGTACGGAC
TATTTCACCTGAGGACACAATTAAAGGCGACGACGATGACGTTATCAATT
TATGTCTTGAAACAATGCGAGATACAAACTCTGtcttgattttttgtcca
aCCAAGAACTGGTGTGAAAAATTATCCATCAGCATTGCCAACTATCTCGC
CAACAATGTTTTGAGTAAAGAATCTGATACAGAgaatatctttgataaag
aaGGCTTACAAGATGTGTTAAGTGAGCTGCAGCAAACACCAGCTGGTTTG
GATCCAAGTTTGGAGAAGGTGGTCAGCTCTGGTGTGTCTTACCATCACGC
TGGACTGACCATGGATGAAAGGGATATCATTGAAGGAGCATTCCGAAGAG
GTGTCTTGAAGATTATTATCGCAACGTCTACGCTGTCATCCGGTGTGAAC
CTTCCAGCTCGCCGTGTCATCATTCGATCCCCTATGTTTCATGGAAAATT
GATCGACGCCTTGGTGTATAAACAAATGGTGGGGCGTGCTGGGCGGAAAG
GCGTCGACACTCAAGGAGAAAGTATCTTGATATGTAAACCAAACGAGAAA
CAAAAATCACTTGCTATGATGACGTCACTCTTGAAACCTGTCTATAGTTG
TTTGTTAGATGCAAGTCGTACTATGAATCGTGCATTACTGGAGGTCATTG
CTGGCGGAGTCGCAGTGTCCCCACCTGACGTCGAGCTCTACGCAAAGAGT
ACTTATTTGAACACGTGTTTGGCCGTTCAAACGGGCCGTCACCCTGAAGA
ACTGATATGCACATCTATGAAGTTTCTACTGGAAAATGATTTCATCAAAC
TGCGCTTTGAGAAAA

Run BLAST on NCBI

transcript from alignment at sc0000012:1145035..1162739-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001980 ID=TCONS_00001980|Name=TCONS_00001980|organism=Clytia hemisphaerica|type=transcript|length=17705bp|location=Sequence derived from alignment at sc0000012:1145035..1162739- (Clytia hemisphaerica)
CTTTTAGCTGTGAAAGAGTATATTTGAACTCTTTCACTTCACCCACCTCT
GTCCCCTTTTCTNAGAATGACTTTACCAGGATTGTCACGCGAAGTATGGT
GTCAACACCTCAAATCAAAATCAAAGAAAATGTTGCTGGTAGTACTGCTA
AAAAACAGGTAGGTCAGTAGTTAAAATGAGCAAGCGTAGCCGTAGGAATG
TTTAGATCAGCTTTAAAGAAAAGCTATCCTCACTTGACATTTTTTGCTGA
CTTCTTTTCCTGGTAAATGGTATCTATTTTATAGTTTAAAAATCCATTTT
ACAATGACTTTTTAGTATCAGAGTTGTACTTTTAATACCCAATGCATGAT
GTAATGTTAATGAATTATTAAGCTTTTGGGTGTGTTTGTGTAGGTCTTGA
GATAATTGGTTTTGAATTGAGTGAAGCCAAGTAACTGAAAACGTTTGACC
CCTCAATTCAATTTTGAGGTTTCAACTAGAGTGATGTCTCTTCAGCTTAT
GGACTCAAATTTTGTTGCTGACGATGAATATTTTCTTCTTTAATCTTTTC
TTTTTTAGAAGTCAGAAGACATTGATTTGGCATGTAAGTCTTCCAAAAAC
AAGAAAAGGTTATCGGCTGAGAAGAAGAACTCTATGCCCTCTCCCGAGCT
CAATTCAAGTCTCCAGTTATCACAATGGGGTCTTCCAGAAGTTATACTGG
AGAATTATAAAGCTAAAGGAATCAATAAAATGTTTGAATGGCAAAAAGAA
TGCTTACTACAAGACCAAGTTTTGGATGGTGGTAAGTTTTTTTTCACGTT
TACTTATAACCAAACAAAAATATTTGATGCCTGTTGATAAAGCCTTTGAT
AAAACCATCCAACGAATTCCCCCTTTTTGACCCTTTATTAGTCTTGGTGG
CTGGTCGAAAGTGACCCGTTTGATAATGACACAACTGGTAATTCTGCCTT
TCTTCCTGGAAATAGCAGCCTGGACTGTGCTGTTTCTTCTTAACCTAGCC
CTATCGCAGCACGTGATTTTTTAGACACCGTTGGAACGGTGCTGAGAAAA
AAGCCACTTCCGTCTGGTACAAGCAATATCAGCTGATTGCCGACCAAGCA
GAGTCCGAAGTATGAAATGTCAAACCAATCATATCAAGTGTAACTTTCAA
AGTCTTTCATTTTTGTTGTATTTCTCCTTACAGCTAATTTGATCTATTCT
GCTCCAACGAGTGCTGGTAAAACGTTAGTCGCTGAAATCCTCATGTTGAA
AAGAGTCCTGGAAACAGAGAAGAAAGCCATCTACATCTTACCCTTTGTCA
GTGTGGCGAGAGAGAAGATGTATTCACTAAGGGTTTGTATTTAAGATTTC
TGAATCTTATCTAGATCACCTAGTCAAACAGAAAAGACTCTTTATTCGTC
ATTGCATTATTGTTCTTATCAACGATGTTACTGCAGCCTTTTCTTCTTAA
AATGATGACTGAAGTTTCTATTGACATCAAAAGACTTGTATATCAGTAAT
ACATTGAATTGTGTGATTATTGATAAAAATTGATAATCGCATTTTAGGAA
ATAGGAAATAAAGTTCTCACGTAAAGTACATAATATTTGTAAATCTCACA
TGCAGGCTTCAAATCTACTAGGGTATGAGTGTTGAAAATTTCACGGCGAT
AAGATAAACAGAAAAAAAGTTACGTCAAAAATTCTAGGGGTGCGGTTTTT
TTTTAATCACCCTGTATTTGCGTATAAGTTTAAACAAATTCTATATCGTA
GAATCAATTTGAGGAAGCTGGCATCAATGTGGGTGGATTTATGGGAAACG
AGACACCTCCTGGTGGATTAACCAACATTGATATCGCTATATGCACCATT
GAACGAGCAAACTCTCTGATCAACCGCCTCATGGAGGAAGACAAGCTATC
TCTACTTGGAAGTATTGTTATTGATGAAATGCACATGATTGGTGACCCAT
CACGTGGTTATTTACTTGAACTCTTATTGACCAAGATTCGATTTTTAATG
GCTAAGAATGCAACCAATGTTGGTGAAAATAATGAGAGCAGCAGTAACCA
TGACAATGGGATACAAATCATAGGTATGAGTGCTACTTTACCGAATTTAG
ACATGATGGCGCGATGGTTGGATGCAAGGTTCTACGTTACAGATTACAGA
CCAGTGCCTTTGGATGAATATTTGAAAACCTCTAAGACTATTTACGATTG
CGCAGATACTGTAGTACGGACTATTTCACCTGAGGACACAATTAAAGGCG
ACGACGATGACGTTATCAATTTATGTCTTGAAACAATGCGAGATACAAAC
TCTGTCTTGATTTTTTGTCCAACCAAGAACTGGTGTGAAAAATTATCCAT
CAGCATTGCCAACTATCTCGCCAACAATGTTTTGAGTAAAGAATCTGATA
CAGAGAATATCTTTGATAAAGAAGGCTTACAAGATGTGTTAAGTGAGCTG
CAGCAAACACCAGCTGGTTTGGATCCAAGTTTGGAGAAGGTGGTCAGCTC
TGGTGTGTCTTACCATCACGCTGGACTGACCATGGATGAAAGGGATATCA
TTGAAGGAGCATTCCGAAGAGGTGTCTTGAAGATTATTATCGCAACGTCT
ACGCTGTCATCCGGTATGTCTTACCATTTCCATTTCTTGATTTGATGACT
ATTTTATTTCTGTTATCACATCATCTCACAAGATATTTTGGTCCTAGATA
AAGGTCCTTTAACAGTAAATTCATGGAACTCAGTTCTTTAAGGAAATTTT
AATTCGTAGCCAATAACTTAGATTCGTTCCATCAAAAGTCATGAAACTTT
TTGTGATCACTTTTCTTGATGGACCAAAATCTATGTACACGGATGCTTTT
AGCTTTGAAAGAGTATATTTGAACTCTTTCACTTCACCCACCTCTGACCC
CTTTTCTTCTCCATCTTGCAGTTCTTACGACATCTGTCTTCTCAGGCCTT
CCCTTTAAAGAAAGGTAGATGCATTGATTTGATCCTTACAAATCGGCCTC
TTTGCTTTAAAAACAGTGGGACTTTTGAAACAGGAATCAGTTCTCAACTT
CAGTTGAGCTACAATCTGACAATGTCTGTCTGTCTCCTGTGTGTGTGTGT
GTGTGTCTGTCTGTCTGTCACAAAAACTTTAGGGCAGCCTGGAGACTTCA
AAAATGCTTGGATTTGGCTGAAATTTGGCACACTTGTTCCTTGGGTGAAT
ATCTGGAAGATCTTTTTTCGTTTTTCAAAAATTTAGATTTTTGAGGCCTG
GGGACGAGTTTTTCACCAAAACGAGGCTAAAACTTTGGGACAGCCTGGAA
ACTTCAAAAATTGTCGTATTTAGCTGAAATTTGGCACACTTGTTCCTTGG
GTGAATATCTGGAAGCGTTTTTTTTCGTTTTTCAAAAAACTTGATTTTTG
GGGCCTGGGGACGAGTTTTCCGCCAAAACGAGGCTAAAACTTTAGAGCAG
AGCCTACAGGCCTCAAAAATGGTTGGATTTGGCTGAAATTTGGCACACNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
ATTTGGCACACTTGTTCCTTGGGTGAATATCTGGGGGTCTACAATCGGGC
CTATGAATAATTTGAAGCCACTGAAGTTGAGCCCAGTGCGTTGCGCACGT
TGCGTGACTACCATCACTTGATTTATAGCATGTTCAAAGCTAGTTTTAAA
AAACTTCCTCCCAAAATTATAGAATATAGATCTTTTAAAAATTTTGATGA
AAGTTGTTTCCGCTCAGCTTTAAGTCGTAATTTTGATTGCGATTTCTCAG
ATTTTGAAGACTTCAGCAACACTTTTGAAAATATTCTGGATGCCCGTGCA
CCAATGAAAAAGCGAACCATAAGGGGAAATCAAAAGCCCCATATAACTAA
AGCTGTCCGAAAAGCTATTATGATTCGCTCTTTTTACAAAAACAAAGCAA
ATAAGACCGGAAACACCTTTTATAAAAACTTATATTGTAAACAAAAAAAT
AATATTGTAAATCTGAATAGGAAAGCAAAGAGAAAGTATTTTCGTGATTT
AAAGGGCAACAGAAAACTTTTGGAAATCTGCAAAACCATACTTTTCAAAC
AAGGTCCAACACCACGAAAAAATGTTCTTGCTTGACGATTCAAGTGAATC
AAACGAGCTGATAGATGACGAGGCTACTATAGCTCAAACCTTTAATGATT
ATTTTGTAAATATCGCTTCTTATCTTGGCATAAAAACTTCAGAATTTAGT
CTTCCTGGGAACACTGAAAATAATCCGCTCGAAAATCATCCTAGCGTCCT
TCGCATCCTCGAATCTCAGTCTACGAACAGATCATTTTCGTTTAGCGAGG
TTACCCCCGAAGATATCCACCGAATCATGATTAAACTTAACCCTAGTAAA
TCCGTGAGCGGTCCTTTTTCAGTTAAGCTTGTTAAAATGGTCTCTGACTT
ATTATCAGAACCATTATCAAAACTAGTAAATCTTGCATTTAGCACTTCTC
AATTCCCTCAAACTCTAAAAAAGGCGAGGGTCACTCCTGTCTTTAAAAAG
GAAGACAAATTTCTGAAGACAAATCATCGGCCAATTAGCATATTGCCAAT
TTTTTCAAAAATTTATGAAAGAATTATGCATGACCAACTTTCATCTTACT
TTGATGGCATTTTTGACTCAAGACTTTGTGGGTTCTGAGCTAAACACAGC
ACCCAGCATGCTCTAATCAAAATGATTGGTCAATGGCATCAAAGCTTGGA
TGCGTCTGGTAAAGTTGGAGCAGTTTTAATGGACTTATCTAAAGCTTTCG
ATTGCATAGACCACAAACTTTTATTAGCTAAACTCAAAGCTTATGGACTC
GATGCTAAAAGTCTTGGCCTTCTCAAATGCTATATGAGTAATCGCTATCA
GAGAACAAAAATATACTATACTCAGTATAGTGAATGGTTGGAAATACATC
TTGGTGTTCCACAGGGCTCTATACTCGGACCCCTTTTATTTAACATTTTT
TTGAATGACTTATTCTTTTTCATAGTCAAAACCAGCATTTGCAATTTTGT
AGATAATAATACATTGTATTCTTGTGCTGAAACTCTTGCAGAGGTCATCT
TAAATCTTGAGTTTGACTTAGAAATTATTCTAGATTGGTTCTCAAAAAAC
TACCTTGAAGCAAATCCTGGAAAATTTCAAATGTTGGTATTAGGAAATAA
TAAAGATATTATTGTAGAACTTTTGGTTGGACATGTAAAAATATCATCAA
CGGATTCTGTTGAGCTCTTAGGCATCACCATCGACAATAATCTATCATTT
AGCACTCATATCAATTCTCTTTGCTCTAAGACTAAAAAGAGAATTTGGAG
CTTAAACAGAATTCGAAACCTTCTTACATTTGACCAANCTCTAAGGCTAA
AAAGAGAATTTGGAGCTTAAACAGAATTCGAAACCTTCTTACATTTGACC
ATGGATGTTCTGTAACAAGACTACAGTACATATGAGGAAATCACTAAAGT
CCACAAGCGGGCTCTGAGAATATTACTTTGTGATTTCCAAGAAGACTATG
AATCTCTGTTACAGAGCGCCAAGTGTAAAACGGTCCATGAAATTCATCTT
CGCTTCTTACTTTGTGAGGTTTTCAAATCTGAGAAAAAATTAAATCCTGA
ATTCATGCAGCAGGTCTATAAATCAAAAACAATTAAGTTTGATTTGCGAA
ACAAAGTCTTGATGGCAATACCCAAGGCTACCTCCCATCGTTTCGGAACA
CAATCCTTTTTATTTCGTGGAAGCTCACTTTGGAATCAAATTCCTGAAAA
TAATAAGCTTAAGCCTTCCATCGATTCATTTAAATCCTTACTTAATGAAA
TAAACCTAACAAATATTTGCCTTTATAAAATATGTACCTAAAAATTTATA
GTTTCACTTTATTATATAGTTTTATAGAAATTATCTTTTCATATAATCAT
TTTTGTCAATAGTTGGTATAAATTAGTATTTAATTATAACTATGTAACAC
CAACGTTAAATAAATCGGGAAAAAAATAAAAAATAAAAAATAAACTGCTA
GATGTAGAAGAAAAGACTAACCAAAATTGTTGTGCACGAACGCTTTGAGC
TGTGAAAGAGTATATTTGAACTCTTCCACTTTACCCACCTCTGACCCCTT
TTCTTCTCCATCTTGCAGTTCTTACAACCTCTTTCTTCTCAGGTCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCTTGCCTTCAAACTGCTAGATGTAGAAGAA
AAGACTAACCAAAATTGTTGTGCACGAACGCTTTTAGCTGTGAAAGAGTA
TATTTGAACTATTTCACTTCAACCACCTCTGGCCCCTTTTCTTCTCCATC
TTGCAGTTCTTACAACCTCTTTCTTCTCAGGCCTTCCCTTCAAACTGCTA
GATGTAGAAGAAAAGACTAACCAAAATTGTTGTGCACGAACGCTTTTAGC
TATGAAAGAGTATATTTGAACTCTTTCACTTCACCCTCCTCTGACCCCTT
TTCTTCTCCATCTTGCAGTTCTTACAACCTCTGTCTTCCAGGCCTTGCCT
TCAAACTGCTATATGTAGAAGAAAAGACTAACCAAAATTGTTTTGCACGA
ACGCTTTTGGCTGTGAAAGAGCTCGCGTGAACTCTTCCACTTTACCCACC
TCTGTCCCCTTTTCTTCTCGATCTTGCAGTTCTTATGACCTCTTTCTTCT
CAGGCCTCCCCTTCAAACTGTTAGATGTAGAAAAAAGACTAACCAAAATT
GTTGTGCACGAACGCTTTTAGCTGTGAAAGAGTATATTTGAACTCTTTCA
CTTCACCCACCTCTGTCCCGTTTTCTTCTCCATCTTGCAGTTCTTATGAC
CTCTTTCTTCTCAGGCCTCCCCTTCAAACTGCTAGATGTAGAAAAAAAGA
CTAACCAAAATTGTCGTGCACGAACGCTTTTGGCTGTGAAAGAGCTCGCG
TGAACTCTTCCACTTTACCCACCTCTGTCCCCTTTTCTTCTCCATCTTGC
AGTTCTTATGACCTCTTTCTTCTCAGGCCTCCCCTTCAAACTGCTAGATG
TAGAAAAAAAGACTAACCAAAATTGTTGTGCACGAACGCTTTTAGCTGTG
AAAGAGTATATTTGAACTCTTTCACTTCACCCACCTCTGTCCCCTTTTCT
TCTCCATCTTGCAGCTCTTACGACCTCTTTTTTCTCAGGCCTTCCCTTCA
AACTGCTAGATGTAGAAGAAAAGACTAACCAAAATTGTTGTGCACGAACT
CTTTTAGCTGTGAGAGAGCTCGCGTGAACTCTTCCACCTTACCCACCTCT
GTCTCCTTTTCTTCTCCATCTTGCAGTTCTTACGACCTCTGTCTTCTCAG
GCCTTGCCTTCAAACTGCTAGATGTAGAAGAAAAGACTAACCAAAATTGT
TGTGCACGAACTCTTTTAGCTGTGAGAGAGCTCGCGTGAACTCTTCCACC
TTACCCACCTCTGTCTCCTTTTCTTCTCCATCTTGCAGTTCTTACGACCT
CTGTCTTCTCAGGCCTTGCCTTCAAACTGCTAGATGTAGAAGAAAAGACT
AACCAAAATTGTTGTGCACGAACTCTTTTAGCTGTGAGAGAGCTCGCGTG
AACTCTTCCACCTTACCCACCTCTGTCTCCTTTTCTTCTCCATCTTGCAG
TTCTTACGACCTCTGTCTTCTCAGGCCTTGCCTTCAAACTGCTAGATGTA
GAAGAAAAGACTAACCAAAATTGTTGTGCACGAACTCTTTTAGCTGTGAG
AGAGCTCGCGTGAACTCTTCCACCTTACCCACCTCTGTCTCCTTTTCTTC
TCCATCTTGCAGTTCTTACGACCTCTGTCTTCTCAGGCCTTGCCTTCAAA
CTGCTAGATGTAGAAGAAAAGACTAACCAAAATTGTTGTGCACGAACTCT
TTTAGCTGTGAGAGAGCTCGCGTGAACTCTTCCACCTTACCCACCTCTGT
CTCCTTTTCTTCTCCATCTTGCAGTTCTTACGACCTCTGTCTTCTCAGGC
CTTGCCTTCAAACTGCTAGATGTAGAAGAAAAGACTAACCAAAATTGTTG
TGCACGAACTCTTTTAGCTGTGAGAGAGCTCGCGTGAACTCTTCCACCTT
ACCCACCTCTGTCTCCTTTTCTTCTCCATCTTGCAGTTCTTACGACCTCT
GTCTTCTCAGGCCTTGCCTTCAAACTGCTAGATGTAGAAGAAAAGACTAA
CCAAAATTGTTGTGCACGAACTCTTTTAGCTGTGAGAGAGCTCGCGTGAA
CTCTTCCACCTTACCCACCTCTGTCTCCTTTTCTTCTCCATCTTGCAGTT
CTTACGACCTCTGTCTTCTCAGGCCTTGCCTTCAAACTGCTAGATGTAGA
AGAAAAGACTAACCAAAATTGTTGTGCACGAACTCTTTTAGCTGTGAGAG
AGCTCGCGTGAACTCTTCCACCTTACCCACCTCTGTCTCCTTTTCTTCTC
CATCTTGCAGTTCTTACGACCTCTGTCTTCTCAGGCCTTGCCTTCAAACT
GCTAGATGTAGAAGAAAAGACTAACCAAAATTGTTGTGCACGAACTCTTT
TAGCTGTGAGAGAGCTCGCGTGAACTCTTCCACCTTACCCACCTCTGTCT
CCTTTTCTTCTCCATCTTGCAGTTCTTACGACCTCTGTCTTCTCAGGCCT
TGCCTTCAAACTGCTAGATGTAGAAGAAAAGACTAACCAAAATTGTTGTG
CACGAACTCTTTTAGCTGTGAGAGAGCTCGCGTGAACTCTTCCACCTTAC
CCACCTCTGTCTCCTTTTCTTCTCCATCTTGCAGTTCTTACGACCTCTGT
CTTCTCAGGCCTTGCCTTCAAACTGCTAGATGTAGAAGAAAAGACTAACC
AAAATTGTTGTGCACGAACTCTTTTAGCTGTGAGAGAGCTCGCGTGAACT
CTTCCACCTTACCCACCTCTGTCTCCTTTTCTTCTCCATCTTGCAGTTCT
TACGACCTCTGTCTTCTCAGGCCTTGCCTTCAAACTGCTAGATGTAGAAG
AAAAGACTAACCAAAATTGTTGTGCACGAACTCTTTTAGCTGTGAGAGAG
CTCGCGTGAACTCTTCCACCTTACCCACCTCTGTCTCCTTTTCTTCTCCA
TCTTGCAGTTCTTACGACCTCTGTCTTCTCAGGCCTTGCCTTCAAACTGC
TAGATGTAGAAGAAAAGACTAACCAAAATTGTTGTGCACGAACTCTTTTA
GCTGTGAGAGAGCTCGCGTGAACTCTTCCACCTTACCCACCTCTGTCTCC
TTTTCTTCTCCATCTTGCAGTTCTTACGACCTCTGTCTTCTCAGGCCTTG
CCTTCAAACTGCTAGATGTAGAAGAAAAGACTAACCAAAATTGTTGTGCA
CGAACTCTTTTAGCTGTGAGAGAGCTCGCGTGAACTCTTCCACCTTACCC
ACCTCTGTCTCCTTTTCTTCTCCATCTTGCAGTTCTTACGACCTCTGTCT
TCTCAGGCCTTGCCTTCAAACTGCTAGATGTAGAAGAAAAGACTAACCAA
AATTGTTGTGCACGAACTCTTTTAGCTGTGAGAGAGCTCGCGTGAACTCT
TCCACCTTACCCACCTCTGTCTCCTTTTCTTCTCCATCTTGCAGTTCTTA
CGACCTCTGTCTTCTCAGGCCTTGCCTTCAAACTGCTAGATGTAGAAGAA
AAGACTAACCAAAATTGTTGTGCACGAACTCTTTTAGCTGTGAGAGAGCT
CGCGTGAACTCTTCCACCTTACCCACCTCTGTCTCCTTTTCTTCTCCATC
TTGCAGTTCTTACGACCTCTGTCTTCTCAGGCCTTGCCTTCAAACTGCTA
GATGTAGAAGAAAAGACTAACCAAAATTGTTGTGCACGAACTCTTTTAGC
TGTGAGAGAGCTCGCGTGAACTCTTCCACCTTACCCACCTCTGTCTCCTT
TTCTTCTCCATCTTGCAGTTCTTACGACCTCTGTCTTCTCAGGCCTTGCC
TTCAAACTGCTAGATGTAGAAGAAAAGACTAACCAAAATTGTTGTGCACG
AACTCTTTTAGCTGTGAGAGAGCTCGCGTGAACTCTTCCACCTTACCCAC
CTCTGTCTCCTTTTCTTCTCCATCTTGCAGTTCTTACGACCTCTGTCTTC
TCAGGCCTTGCCTTCAAACTGCTAGATGTAGAAGAAAAGACTAACCAAAA
TTGTTGTGCACGAACTCTTTTAGCTGTGAGAGAGCTCGCGTGAACTCTTC
CACCTTACCCACCTCTGTCTCCTTTTCTTCTCCATCTTGCAGTTCTTACG
ACCTCTGTCTTCTCAGGCCTTGCCTTCAAACTGCTAGATGTAGAAGAAAA
GACTAACCAAAATTGTTGTGCACGAACTCTTTTAGCTGTGAGAGAGCTCG
CGTGAACTCTTCCACCTTACCCACCTCTGTCTCCTTTTCTTCTCCATCTT
GCAGTTCTTACGACCTCTGTCTTCTCAGGCCTTGCCTTCAAACTGCTAGA
TGTAGAAGAAAAGACTAACCAAAATTGTTGTGCACGAACTCTTTTAGCTG
TGAGAGAGCTCGCGTGAACTCTTCCACCTTACCCACCTCTGTCTCCTTTT
CTTCTCCATCTTGCAGTTCTTACGACCTCTGTCTTCTCAGGCCTTGCCTT
CAAACTGCTAGATGTAGAAGAAAAGACTAACCAAAATTGTTGTGCACGAA
CTCTTTTAGCTGTGAGAGAGCTCGCGTGAACTCTTCCACCTTACCCACCT
CTGTCTCCTTTTCTTCTCCATCTTGCAGTTCTTACGACCTCTGTCTTCTC
AGGCCTTGCCTTCAAACTGCTAGATGTAGAAGAAAAGACTAACCAAAATT
GTTGTGCACGAACGCTTTTAGCTATGAAAGAGAATATTTGAACTCTTTCA
CTTCACCCTCCTCTGACCCCTTTTCTTCTCCATCTTGCAGTTCTTATGAC
CTCTTTCTTCTCAGGCCTCCCCTTCAAACTGCTAGATGTAGAAGAAAAGA
CTAGCCAAAATTGTTGTGCATGAACGCTTTTAAATGTGAAACAGTATATT
TGAACTCTTTCACTTCACCCACCTCTGACCCCTTTTCTTCTCCATCTTGC
AGTTCTTACGACCTCTGTCTTCTCAGGCCTTGCATTCAAACTGCTAGATG
TAGAAGAAAAGACTAACCAAAATTGTTGTGCATGAACGCTTTTGGCTGTG
AAAGAGCTCGCGTGAACTCTTCCACTTTACCCACCTCTGTCCCCTTTGCT
TCTCCATCTTGCAGTTCTTATGACCTCTTTCTTCTCAGGCCTCCCCTTCA
AACTGCTAGATGTAGAAGAAAAGACTAGCCAAAATTGTTGTGCATGAACG
TTTTTAAATGTGAAACAGTATATTTGAACTCTTTCACTTCACCCACCTCT
GACCCCTTTTCTTCTCCATCTTGCAGTTCTTACGACTTCTTTCAATTCTC
AGGCCTCCCCTTCAAACTGCTAGATGTAGAAGAAAAGACTAACCAAAATT
GTTGTGCACGAACGCTTNTTCTTCTCAGGCCTCCCCTTCAAACTGCTAGA
TGTAGAAGAAAAGACTAACCAAAATTGTTGTGCACGAACGCTTTTGGCTG
TGAAAGAGCTGGCGTGAACTCTTCCACTTTACCCACCTCTGTCCCCTTTT
CTTCTCCATCTTTCAGTTCTTATGACCTCTTTCTTCTCAGGCCTCCCCTT
CAAACTGCTAGATGTAGAAGAAAAGACTAGCCAAAATATTTGTGCATGAA
CCCTTTTAAATATGAAACAGTATATTTGAACTCTTTCACTTCACCCACCT
CTGACCCCTTTTCTTCTCCATCTTGCAGTTCTTACGACCTCTTTCAATTC
TCAGGCCTCCCCTTCAAACTGCTAGATGTAGAAGAAAAGACTAACCAAAA
TTGTTGTGCACAAACGCTTTTGGCTGTGAAAGAGCTTGCGTGAACTCTTC
CACTGTGTAGAGTTATGGCGAAGAATAAGGGTGATCTTGCAGTTCTTATG
ACCTCTTTCTTCTCAGGCCTCCCCTTCAGGGGGCTAAATGTAGAAGAAAA
GACTAACCAAAATTGTTGTGCACAAACGCTTTTGGCTGTGAAAGAGCTTG
CGTGAACTCTTCCACTGTGTAGAGTTATGGCGAAGAATAAGGGTGATCTT
GCAGTTCTTATGACCTCTTTCTTCTCAGGCCTCCCCTTCAGGGGGCTAAA
TGTAGAAGAAAAGACTAACCAAAATTGTTGTGCACAAACGCTTTTGGCTG
TGAAAGAGCTTGCGTGAACTCTTCCACTGTGTAGAGTTATGGCGAAGAAT
AAGGGTGATCTTGCAGTTCTTATGACCTCTTTCTTCTCAGGCCTCCCCTT
CAAACTGCAAGATGTAGAAGAAAAGACTGACCAAAATTGTTGTGCACAAA
CCCTTTAACCATATGCAATGTTATATTTCTTTTTCTTTTTTTGCCTTTTT
ATAAATTTTCTAAATTTTCAAATGTCAAATTTTATATTTGACGTCACTTA
CACAAACCTTGATTTTATTGTCAATGAGATTCCTACAACTCAGTTCAAAT
TACGTAAATTTCATTATTATCTAAAGAACCATAAAATTGTTTCGATTAAA
CTATTTGTATAATAATAGTGCTTTGTGTTTTGATGCCGTATTAATTTCCT
TATTCTGAGACCCGAGCTTTTCTAAAATTGATAATGATAATAATATGCCT
AGCCTCGATGTCGAGTTAAATAGTAACAAGTTCATATCTCTGAATACGAT
AGTTTAATAAACTCTTTTTTACAACCAAACCGTCGTTGGTTTACGCATTG
CACAGGATCAGTATTTTATACTAACATTGTACCCAAACATTTTACCCCAA
TGAATTTCCTTATGGGCCTCACCCTATACACTACACTCAACACTCCGTAC
TCATTTATGCCTAGTTTTGTCTTCCGGTAGAAAGACACCTTTTTACGGTG
AAAACTTTTCTTGATCATCTTTTCCCATAAACATTAAACCTCAATGAATC
TTTTCAGGGTCTAACCTTAAAGTCCCCTTAAACCCTGCATCCATGATTCT
GCACCCATGGCCAGGCTTCTATCGGTGAGGCAGATTTTTTTCCGTCAAGA
GATAGGGACCTACGTCAGCGGCCGAAGTCCCTCAAAACTTCAACGCGGGG
CTCCATCTGGCAAAGACCTACACGAACGGTCGAATACCTACAGATTATTG
TGTGATTACTTTTCAACTGTCGAAGACCTACAGGAACGGCCTGTAATGTG
ACCTAGCGGACGAATATCTCTGAATCGATTTTCTCTTTTTGCATCGCTAA
ATTATCGCGTACAAATAATTGCCAGTTAAGCTATAATTTCTTATTCACGA
TATATAATTTGTGAATAGAGTAGCCTTTGCAAACGTTGAGATATTCAATT
ACTGATTTGATTGACCAGTATTCACTTGGCATCAAACTTGCACAAAATGT
ATTTCTTATTTTTTTCCCAAAAGTGTCATCTGTGAAGCTAAGATCAGAAA
TGTGCTCAACCGAAGATTTATCCTGGAAATTTGATCGCGCCTCGAATGGT
TATAGCAGATTGAAGCTAACAAATCTCCTGTATTTTTAGTTGAATCTAAG
ACCAAGTCCTTCAAGAAAATGGGAATTTCAGTTCATTCTAATTTCTTATG
TCAAAAATTACTTAACAAACGAATTTTAACCGAATTTTCTCTACCGGTTT
TAAAGGGCTCTGACCATGTCGGAAAATTGGTTTTAGTATTTGAACATAAA
TGTTATGTTTTAGGTTCTTAACACTTTTAACAAGGAATTGCCTTTATAGA
TTGCTTTTTAATCAAATCCCTTAAGAGTAATTAAGATTTTAGTTACAAAA
ATAACGTTATGAACTTTAAAAAGACGTGCTAAGTTTTAATGGGTAATTAA
CCTTTTTGTTTCGAAGTTTTTTTCAAACTGTCCGCCAAGAATTGAACTGT
TTTAAATTTTTCGTTAAATAAATGCATCAAAAGTTATGGCTGTTTTTCTA
TGAAGAATTGGGATGGAAAATGGTCAATTTTCAAGATTTTGAGACAAATA
AGCTTTTAGAAAAACTTTCCGAAAAAATAATTTTAATTTGATAAAAGATA
CACCATCTACTGCAAATATTTTTTTTAAATGTTTTTTATCCGCCGAAACT
AAGCTCTTCANAAAAGATACACTGCAAATATTTTTCTTAAATGTTTTTTC
TCCGCGGAAACTAAGCTCTTCCAAGTTGAAATACTCTTCTTCGCAAAAGT
CTTCATTTTCTTCTTCATCAAATTTTTTCATTACGATTATTAAATTTTCA
GACTCAAGGATAATTGGCCTAACAGAAAATGTATAACATGCCACAGTTTT
GTGGGCTATATGAAGTAGAAATTTACATTTTGTAAGTGACAAATATCAAA
AATTCACTATGGTCAGAGCCCTTAAATCATACAAGTACCGACTCTTTTTA
TTATTACCGACTTTTTGTAGCTTGCCTCGCACAAGTATATTAGTCATTAG
CGTTGAAGAGCTTTCAAATCTTTCAACGAGTCATCCTCAATTTCAAAATT
TTAACAAATGACTTCGAACCTTCTTGAAACGATTTTTATTATTCCTGATC
GAAGGTTTGTAAGTATTTATAAGCAATAATAAATAAGCAACTCCAATAGT
TTGCCCAACAGGGTTTGATTACTTTGATTTCCAATCACTTTCCGTCCACT
CCGTCACATTTGGATTCTCAAATGTCCAAGTCTTGATGTTTGCCTTCAGT
CTTCTTCGACCGTAGAAAACTAATTACACATATTAAATCTCTAGATATTT
TGCCGTTTTTGTCTTTCATCGCTAGAATACCCCATGTTAATTTTTTGGCT
TTTGGCGTAGGTCCTCGTCCGTTGACGGAAAAAATCCGCATTTGCCAGAA
GCCAGTTTTCATATCTATATTTATTTATCACTGGTCATTTAAGGCTTATT
TTTGCTTAGAGGTAGGTCCTAAAATATAATAAGAAAATACTCACACGCAC
CAAAATGATGACACAGGAAAATATTAGAAAATGAAATGGTTCTTAGACAC
TGACAAATGTTTTCGGATTGTTTGTTTGTGAGTGCAAGTATACTTATGAC
CAGACAGGTTTGATTTGTTGTCCGATTAACAACAAGCTAATAATCACATC
ACTGCCATACCAAAACACTCTGTAGGGACACTTCCATTTCTAATATTTTC
CTGGTTAATTGATCGCCGAAACACTGCTTTTTCCAAGTCAAGTCCATTTC
TTATTGAAGTAAATCCGTATTCTAATTTTAATGCGACAATTCTAACAAGC
ATCAGCTTTCAAATTATTATTTGACGTCAGTTATCAAATTTCCTGCATTA
TTCTACGTCACCCAGTTTCATTATCGATCGAAGTGTAGTTCTCATGAATT
CTGATAGTGTTACCGTGTTAAAATCATATCATAGTCATATGAACATGTTG
CGCTAGAACTGAACCCCCTGAAGGGAAATGAATTACTATTTAAATCATAA
AATACTCCCAAAATTTGATGTGCTCGTAATTTTGAAATTTTAAGGCTTCA
TGTCATATTCCTATTACATAAACTTTAATTTGTATAAGATCCACTTTTTC
TAGTATCAGGGTTTTTTACTCATTGTTCTCATAAAATTCTTCTTAAATGT
ATAACAAAGATTTCATGGATCCAATCATTCACGTCTTTTTCTTTGTTTAT
TACAATTTTCCCTTTATTTGTTAGGTGTGAACCTTCCAGCTCGCCGTGTC
ATCATTCGATCCCCTATGTTTCATGGAAAATTGATCGACGCCTTGGTGTA
TAAACAAATGGTGGGGCGTGCTGGGCGGAAAGGCGTCGACACTCAAGGAG
AAAGTATCTTGATATGTAAACCAAACGAGAAACAAAAATCACTTGCTATG
ATGACGTCACTCTTGAAACCTGTCTATAGTTGTTTGTTAGGTAATACGCT
TTTTAGAAGTACACATATATCACTTTTGGAATTTAAAGTTTAATGCCGTC
CGTATGAACGACGATCTTCAGCCAAATTCAATGAAACCTAAAATTCAAAT
TAGTTTTAAATTTCAAAATAGTGTCCACTGTGTTTAAGTTTTTCATAAAC
TGCGTAAGAAGATTTGTGTCTTCTAAAGCGAAAACTATTCATAACATTTT
AGATGCAAGTCGTACTATGAATCGTGCATTACTGGAGGTCATTGCTGGCG
GAGTCGCAGTGTCCCCACCTGACGTCGAGCTCTACGCAAAGAGTACTTAT
TTGAACACGTGTTTGGCCGTTCAAACGGGCCGTCACCCTGAAGAACTGAT
ATGCACATCTATGAAGTTTCTACTGGAAAATGATTTCATCAAACTGCGCT
TTGAGAAAAATAAGGTATAGATGAATGTAATTTGTCTTTTTCAAGTTACG
TCTTCTTTTCTTATATCTTTTTGTAGAATTTGGATGAAAAAATCAAGTTG
ACGCTTCGAGACAAAATGTTACTAGAAACCTCTGAGGATAAAATGGCGAT
CTTACAAGATGTCAAGAGGGGGCGAGGACCCAAATTAGTACTTTCGATGA
TTTAGTGTACATATTCTGACCGTTGTGCTAGCAATGGCCTGAATGGAGCA
GGGAGAGAAAAAAGCCGTTAGCCCCGCTGTCAGGGGGATAATTCTACGTT
CTTTAAAAACTACCAAAACTCAGATGGAAAAATAATTCGAGTGATAGTAT
AGATTTTAATTTATCAAGCTTCGGATTAGAAAAGTTGGACGGCGTGTTTT
TTACACAAAACTGCAACTTAAGTTTGAGTTTCTTACATCCACGTTTTTGC
AAGAATTGCCTTTTGATTCTTTCTCATAGGATGATGTGAACGAGAAATCG
AAAGAACAATACTTCCCATCACAATTGGGCACCGCTACAATGGCCTCTTC
TATGAAACCAGATGAAGCCATAATAGTTTATACAGAGTTGCAAAAAGCAC
GCCGTAATTTTTGCCTGGAAAACGAACTTCATATCATATATCAGGTGTCG
TATTTTTACATTCTTCTTTTTTACCCCTGAAAAACAGTACCTGTTTCCAT
TATGTAATTTTGATACCTGNGCGGAAAGGCGTCGACACTCAAGGAGAAAG
TATCTTGATATGTAAACCAAACGAGAAACAAAAATCACTTGCTATGATGA
CGTCACTCTTGAAACCTGTCTATAGTTGTTTGTTAGGTAATACGCTTTTT
AGAAGTACACATATATCACTTTTGGAATTTAAAGTTTAATGCCGTCCGTA
TGAACGACGATCTTCAGCCAAATTCAATGAAACCTAAAATTCAAATTAGT
TTTAAATTTCAAAATAGTGTCCACTGTGTTTAAGTTTTTCATAAACTGCG
TAAGAAGATTTGTGTCTTCTAAAGCGAAAACTATTCATAACATTTTAGAT
GCAAGTCGTACTATGAATCGTGCATTACTGGAGGTCATTGCTGGCGGAGT
CGCAGTGTCCCCACCTGACGTCGAGCTCTACGCAAAGAGTACTTATTTGA
ACACGTGTTTGGCCGTTCAAACGGGCCGTCACCCTGAAGAACTGATATGC
ACATCTATGAAGTTTCTACTGGAAAATGATTTCATCAAACTGCGCTTTGA
GAAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001020	XLOC_001020	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000012	supercontig	sc0000012:1145035..1162739 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0912937	0.188206	0.253403	0.104876	0.634539	1.45653	0	0	0.214148	0.583613	0.066176	0.105401	0.117009	0	0.0629809	0.451636	0.289537	0.0534072	0	0.075857	0	0.0574968	0.14172	0	0	0	0	0	0.697084	0.568343

Blast

[Close]

BLAST of TCONS_00001980 vs. Swiss-Prot (Human)
Match: DPOLQ (DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2)

HSP 1 Score: 571.622 bits (1472), Expect = 0.000e+0
Identity = 288/551 (52.27%), Postives = 395/551 (71.69%), Query Frame = 3

Query:  201 KKRLSAEKKNSMPSPELNSSLQLSQWGLPEVILENYKAKGINKMFEWQKECLLQDQVLDGANLIYSAPTSAGKTLVAEILMLKRVLETEKKAIYILPFVSVAREKMYSLRNQFEEAGINVGGFMGNETPPGGLTNIDIAICTIERANSLINRLMEEDKLSLLGSIVIDEMHMIGDPSRGYLLELLLTKIRFLMAKNATNVGENNESSSNHDNGIQIIGMSATLPNLDMMARWLDARFYVTDYRPVPLDEYLKTSKTIYDCADTVVRTISPEDTIKGDDDDVINLCLETMRDTNSVLIFCPTKNWCEKLSISIA------NYLANNVLSKESDTENIFDKEGLQDVLSELQQTPAGLDPSLEKVVSSGVSYHHAGLTMDERDIIEGAFRRGVLKIIIATSTLSSGVNLPARRVIIRSPMFHGKLIDALVYKQMVGRAGRKGVDTQGESILICKPNEKQKSLAMMTSLLKPVYSCLL-----DASRTMNRALLEVIAGGVAVSPPDVELYAKSTYLNTCL-----AVQTGRHPEEL--ICTSMKFLLENDFIK 1799
            K   + E K ++P  E +  L L+ WGLP+ +LE Y + G+ KMFEWQ ECLL  QVL+G NL+YSAPTSAGKTLVAE+L+LKRVLE  KKA++ILPFVSVA+EK Y L++ F+E GI V G+MG+ +P    +++DIA+CTIERAN LINRL+EE+K+ LLG +V+DE+HM+GD  RGYLLELLLTKI ++  K+A+      + +S+  N +QI+GMSATLPNL+++A WL+A  Y TD+RPVPL E +K   +IYD +  +VR   P   +KGD+D V++LC ET+ D +SVL+FCP+K WCEKL+  IA      ++ A  ++        I +++ L +V+ +L++ P+GLD  L+K V  GV++HHAGLT +ERDIIEGAFR+G+++++ ATSTLSSGVNLPARRVIIR+P+F G+ +D L YKQMVGRAGRKGVDT GESILICK +EK K +A++   LKPV SCL      + + +M RA+LE+I GGVA +  D+  YA  T+L   +      +Q  +   +L  I   + +LLEN+FI+
Sbjct:   50 KAAAAGECKPTVPDYERDK-LLLANWGLPKAVLEKYHSFGVKKMFEWQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKKYYLQSLFQEVGIKVDGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASCQA---DLASSLSNAVQIVGMSATLPNLELVASWLNAELYHTDFRPVPLLESVKVGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETICDNHSVLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYKQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTFLAASMKEGKQGIQRNQESVQLGAIEACVMWLLENEFIQ 596

The following BLAST results are available for this feature:

BLAST of TCONS_00001980 vs. Swiss-Prot (Human)

BLAST of TCONS_00001980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DPOLQ	0.000e+0	52.27	DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 ...	[more]

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TCONS_00001980 (transcript) - C. hemisphaerica