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TCONS_00001977 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001977
Unique NameTCONS_00001977
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001977 ID=TCONS_00001977|Name=TCONS_00001977|organism=Clytia hemisphaerica|type=transcript|length=1828bp
TGAGTCCTTTCCCTAAAGCTGAATTCCTTCATTCGTAAAAGTAGCCAGGA
CCGTCTATCATAAAAGAACCAACACAACAAATCATGTCCAAAAGAAAGGC
AGCTGAACAATCTTCAAGTGATGACACTCAAGatgtATCAGTCAAGGGTT
ACATCATGAATATGTCACCTGTCCGCACATCAAAGAATTCAAAACCttat
ttcaatttgaatgtGGAAGTGGAAGAAGGGACTGTCGTCAAAGCAGTCTG
TCATGCCCCCAGAAAAAGGAGGTTGTTTGAGGAGGCTGAAGCCATCGGAA
TAGGAGTTAGCATCAGCCAAGCCCAATCATACAGTGATGGCACCCTCAAG
ATTTATGAGAAGACGTCAGTCAAACATGAAGTGTTGGGCTTCAAACCCAA
ATACCAGATTGAAATTACCACACTGTCAAAAGTCGTAAATGAAGTGCCAG
TTGGCAATTATGTCAACGTTCAAGGTGTCGTCCAGCTGGATGAAGTCGAA
CAAGTTATGACATCCGGTGGTGAAATACCAATGAGGCGAGGCCACATTTC
AGATGAAAACGAATTTATTAAAATTGTACTTTGGCGTGAGTATGCAACAT
TGCTAACAGATAAGCAATGTTATACGTTGTGTAACTTGAAAAAAGGGATC
TACAACAATGTTGAAGAACTGCATACCTCTCATACAACATCTTTCAAACT
TGCCAAACAACCTACTTCATTTAAAACACCTGATAGTGGTGATGCGACTG
AATTAACCAACTGTTCCATTGTTGGTACCAAATTTATCCACACTGTAAAA
TGCTTGTTCTGTACTGCCAAAATCGATTGCAAGGAGGAAACAGGAGATGT
TGAGTGTCCACATTGTAAGGGTACCTCAGTGATATCATCGATTGGTCAAC
AGAAGTATTGGAAATTGTTTGTCAACCATGATGGGAGAATTGTAAAGCTC
GACGTTACTGCAGATAAGCTTCCAACGTTAAAGTATGACCAGGTAAAATC
TTATTTGTTGACAAACAAATTTGCCATTACATACCTTTCTATGTCTGGAT
TGATAAGCAGAATGTTGTTGGTTAGAAAACCACAACCTGAAGAGGATAAG
GAAAACTTGTTCAGAAAACCACAATCTGAAGAGGATAAGGAAACCACAAC
CTGAAGAGGATAAGGAAACCACATACAAGGATCaatagttttattttgtt
ctcttttaaacttgttattttcttttgttgacCATTCTTATAGTATGTAT
gtaaaaaatattcccaaaaattgaTCCCCCACCCCTCTGTCCCACCCTGC
CTCCCTTTTATGCCAGAGAAAAAACATTGACATATTTCAAACAATACCAT
GATGAACACATCGGCTGAAACCCCTCTCCCTCCACTACATATCTACTATA
TGAATATCAGTttatattagttttttttttcactttgtaaATGACAAAAA
GTTTACACTAGTTTTATAACTATTTAataatagtttttttttgttgggaT
GTTGCCTTCTGTATCATTACCCTCgttgaaacaaatgaaactaCTTATAC
TATGGGTATTGGCAAAATTTAACATAAAGTGTACCTCTACTCTTGCAATT
TTTAAATGATACCTGCCCCATTGAAATCAACAAAGATCTTGATTTCTTta
atagaaaaactttttcgatTTGAGAAATCTTGTTGATAaggctttttgat
tttttaacatTTGATTGGAAAATCTGGCTGGAAAAGTCTTTCAATATCCA
TGTATTGAgtaataattgtttttacagtTGATCAAATCGAAACCTATTGA
GTATGTAGCTTTAAACACTTAATGGCAG
Run BLAST on NCBI

protein sequence of TCONS_00001977-protein

>TCONS_00001977-protein ID=TCONS_00001977-protein|Name=TCONS_00001977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MSKRKAAEQSSSDDTQDVSVKGYIMNMSPVRTSKNSKPYFNLNVEVEEGT
VVKAVCHAPRKRRLFEEAEAIGIGVSISQAQSYSDGTLKIYEKTSVKHEV
LGFKPKYQIEITTLSKVVNEVPVGNYVNVQGVVQLDEVEQVMTSGGEIPM
RRGHISDENEFIKIVLWREYATLLTDKQCYTLCNLKKGIYNNVEELHTSH
TTSFKLAKQPTSFKTPDSGDATELTNCSIVGTKFIHTVKCLFCTAKIDCK
EETGDVECPHCKGTSVISSIGQQKYWKLFVNHDGRIVKLDVTADKLPTLK
YDQVKSYLLTNKFAITYLSMSGLISRMLLVRKPQPEEDKENLFRKPQSEE
DKETTT
Run BLAST on NCBI

transcript from alignment at sc0000012:1110662..1113509-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001977 ID=TCONS_00001977|Name=TCONS_00001977|organism=Clytia hemisphaerica|type=transcript|length=2848bp|location=Sequence derived from alignment at sc0000012:1110662..1113509- (Clytia hemisphaerica)
TGAGTCCTTTCCCTAAAGCTGAATTCCTTCATTCGTAAAAGTAGCCAGGA CCGTCTATCATAAAAGGTAAGCAAACCAAATCAGATAATATCCCTTAATC TAAATCTAAAAGTTTAGAAAAGTTTAGTTCAATTACAAGAAGTTCACTTT GATTTCCAGATGATGAGTGTATTTCTTTCAGAAGCATTTTAATAGGGAAT GGAGATCTGCCCTGAACCTCTAAACAACTTCACTCAAAGACCTCATCTCT CGTTTCAGAACCAACACAACAAATCATGTCCAAAAGAAAGGCAGCTGAAC AATCTTCAAGTGATGACACTCAAGGTATTAAACTTTACTTTAAATATTTG TCTTTATGGGAAGTGTTGCTATGGTCTTTAAACCTACACATTTCTGAAAT GGCCCCATTGGAGTGGTGTCACCTTAGTGCTGCGTAAGGGGTCTTGCAGA AATTATCTACGTGCCCAATGAGGGGTCACTGGTCTAAAAAGGCTATGAGG CAGACGTATGCCACTTGAGTTTAATTACTATTTTGTTCTTTTGAAGGGTT AATTTTTTGTCAATTTGTCACATTAAAATTAGAAATTGTGTTTTGATACA GTACAAGAGACATTTTTTCCTAAAATTCCACTTATCTTAAGGAAGGAGTT GATTAATCAGTGCAGGGCTATATTCCATTTTTTGTCAAAATCGTTTGGAG GCCACCGCTTGAGAGGCGACTACTTTTCCAGGCCCTACCAATCGGTAGGT TGTCAATAATTGGTTCTGAACGAAAAGTAATCGATGGATTGATATTATCA ATTGATTCTGATAATCAGAATTCTCAGAATCAATCGTTAATCAATCCATC CATTACCTATCAATTTAAAAAAAATTATTNTAATCGATACTCAGAATCAA TCGTTAATCAATCAATCAATTACCTATCAATTTGAAAAAAATTATCGATA ACCTACCAATTGGCAGGGCCTGGAATTTGATTCAATTTTTCAAAAAACTA ATGTTAGTATCCTGTCAAAATTCCTGTTCAATTTTTTTTAGATGTATCAG TCAAGGGTTACATCATGAATATGTCACCTGTCCGCACATCAAAGAATTCA AAACCTTATTTCAATTTGAATGTGGAAGTGGAAGAAGGGACTGTCGTCAA AGCAGTCTGTCATGCCCCCAGAAAAAGGAGGTTGTTTGAGGAGGCCGAAG CCATCGGAACNAAACCTTATTTCAATTTGAATGTGGAAGTGGAAGAAGGG ACTGTCGTCAAAGCAGTCTGTGATGCCTCCAGAAAAAGGAGGTTGTTTGA GGAGGCTGAAGCCATCGGAATAGGAGTTAGCATCAGCCAAGCCCAATCAT ACAGTGATGGCACCCTCAAGATTTATGAGAAGACGTCAGTCAAACATGAA GTGTTGGGCTTCAAACCCAAATACCAGATTGAAATTACCACACTGTCAAA AGTCGTAAATGAAGTGCCAGTTGGCAATTATGTCAACGTTCAAGGTGTCG TCCAGCTGGATGAAGTCGAACAAGTTATGACATCCGGTGGTGAAATACCA ATGAGGCGAGGCCACATTTCAGATGAAAACGAATTTATTAAAATTGTACT TTGGCGTGAGTATGCAACATTGCTAACAGATAAGCAATGTTATACGTTGT GTAACTTGAAAAAAGGGATCTACAACAATGTTGAAGAACTGCATACCTCT CATACAACATCTTTCAAACTTGCCAAACAACCTACTTCATTTAAAACACC TGATAGTGGTGATGCGACTGAATTAACCAACTGTTCCATTGTTGGTACCA AATTTATCCACACTGTAAAATGCTTGTTCTGTACTGCCAAAATCGATTGC AAGGAGGAAACAGGAGATGTTGAGTGTCCACATTGTAAGGGTACCTCAGT GATATCATCGATTGGTCAACAGAAGTATTGGAAATTGTTTGTCAACCATG ATGGGAGAATTGTAAAGCTCGACGTTACTGCAGATAAGCTTCCAACGTTA AAGTATGACCAGGTAAAATCTTATTTGTTGACAAACAAATTTGCCATTAC ATACCTTTCTATGTCTGGATTGATAAGCAGAATGTTGTTGGTTAGAAAAC CACAACCTGAAGAGGATAAGGAAAACTTGTTCAGAAAACCACAATCTGAA GAGGATAAGGAAACCACAACCTGAAGAGGATAAGGAAACCACATACAAGG ATCAATAGTTTTATTTTGTTCTCTTTTAAACTTGTTATTTTCTTTTGTTG ACCATTCTTATAGTATGTATGTAAAAAATATTCCCAAAAATTGATCCCCC ACCCCTCTGTCCCACCCTGCCTCCCTTTTATGCCAGAGAAAAAACATTGA CATATTTCAAACAATACCATGATGAACACATCGGCTGAAACCCCTCTCCC TCCACTACATATCTACTATATGAATATCAGTTTATATTAGTTTTTTTTTT CACTTTGTAAATGACAAAAAGTTTACACTAGTTTTATAACTATTTAATAA TAGTTTTTTTTTGTTGGGATGTTGCCTTCTGTATCATTACCCTCGTTGAA ACAAATGAAACTACTTATACTATGGGTATTGGCAAAATTTAACATAAAGT GTACCTCTACTCTTGCAATTTTTAAATGATACCTGCCCCATTGAAATCAA CAAAGATCTTGATTTCTTTAATAGAAAAACTTTTTCGATTTGAGAAATCT TGTTGATAAGGCTTTTTGATTTTTTAACATTTGATTGGAAAATCTGGCTG GAAAAGTCTTTCAATATCCATGTATTGAGTAATAATTGTTTTTACAGTTG ATCAAATCGAAACCTATTGAGTATGTAGCTTTAAACACTTAATGGCAG

Coding sequence (CDS) from alignment at sc0000012:1110662..1113509-

>TCONS_00001977 ID=TCONS_00001977|Name=TCONS_00001977|organism=Clytia hemisphaerica|type=CDS|length=3213bp|location=Sequence derived from alignment at sc0000012:1110662..1113509- (Clytia hemisphaerica)
GCTGAAGCCATCGGAATAGGAGTTAGCATCAGCCAAGCCCAATCATACAG
TGATGGCACCCTCAAGATTTATGAGAAGACGTCAGTCAAACATGAAGTGT
TGGGCTTCAAACCCAAATACCAGATTGAAATTACCACACTGTCAAAAGTC
GTAAATGAAGTGCCAGTTGGCAATTATGTCAACGTTCAAGGTGTCGTCCA
GCTGGATGAAGTCGAACAAGTTATGACATCCGGTGGTGAAATACCAATGA
GGCGAGGCCACATTTCAGATGAAAACGAATTTATTAAAATTGTACTTTGG
CGTGAGTATGCAACATTGCTAACAGATAAGCAATGTTATACGTTGTGTAA
CTTGAAAAAAGGGATCTACAACAATGTTGAAGAACTGCATACCTCTCATA
CAACATCTTTCAAACTTGCCAAACAACCTACTTCATTTAAAACACCTGAT
AGTGGTGATGCGACTGAATTAACCAACTGTTCCATTGTTGGTACCAAATT
TATCCACACTGTAAAATGCTTGTTCTGTACTGCCAAAATCGATTGCAAGG
AGGAAACAGGAGATGTTGAGTGTCCACATTGTAAGGGTACCTCAGTGATA
TCATCGATTGGTCAACAGAAGTATTGGAAATTGTTTGTCAACCATGATGG
GAGAATTGTAAAGCTCGACGTTACTGCAGATAAGCTTCCAACGTTAAAGT
ATGACCAGGTAAAATCTTATTTGTTGACAAACAAATTTGCCATTACATAC
CTTTCTATGTCTGGATTGATAAGCAGAATGTTGTTGGTTAGAAAACCACA
ACCTGAAGAGGATAAGGAAAACTTGTTCAGAAAACCACAATCTGAAGAGG
ATAAGGAAACCACAACCTGAATGTATCAGTCAAGGGTTACATCATGAATA
TGTCACCTGTCCGCACATCAAAGAATTCAAAACCTTATTTCAATTTGAAT
GTGGAAGTGGAAGAAGGGACTGTCGTCAAAGCAGTCTGTCATGCCCCCAG
AAAAAGGAGGTTGTTTGAGGAGATGTCCAAAAGAAAGGCAGCTGAACAAT
CTTCAAGTGATGACACTCAAGGCTGAAGCCATCGGAATAGGAGTTAGCAT
CAGCCAAGCCCAATCATACAGTGATGGCACCCTCAAGATTTATGAGAAGA
CGTCAGTCAAACATGAAGTGTTGGGCTTCAAACCCAAATACCAGATTGAA
ATTACCACACTGTCAAAAGTCGTAAATGAAGTGCCAGTTGGCAATTATGT
CAACGTTCAAGGTGTCGTCCAGCTGGATGAAGTCGAACAAGTTATGACAT
CCGGTGGTGAAATACCAATGAGGCGAGGCCACATTTCAGATGAAAACGAA
TTTATTAAAATTGTACTTTGGCGTGAGTATGCAACATTGCTAACAGATAA
GCAATGTTATACGTTGTGTAACTTGAAAAAAGGGATCTACAACAATGTTG
AAGAACTGCATACCTCTCATACAACATCTTTCAAACTTGCCAAACAACCT
ACTTCATTTAAAACACCTGATAGTGGTGATGCGACTGAATTAACCAACTG
TTCCATTGTTGGTACCAAATTTATCCACACTGTAAAATGCTTGTTCTGTA
CTGCCAAAATCGATTGCAAGGAGGAAACAGGAGATGTTGAGTGTCCACAT
TGTAAGGGTACCTCAGTGATATCATCGATTGGTCAACAGAAGTATTGGAA
ATTGTTTGTCAACCATGATGGGAGAATTGTAAAGCTCGACGTTACTGCAG
ATAAGCTTCCAACGTTAAAGTATGACCAGGTAAAATCTTATTTGTTGACA
AACAAATTTGCCATTACATACCTTTCTATGTCTGGATTGATAAGCAGAAT
GTTGTTGGTTAGAAAACCACAACCTGAAGAGGATAAGGAAAACTTGTTCA
GAAAACCACAATCTGAAGAGGATAAGGAAACCACAACCTGAATGTATCAG
TCAAGGGTTACATCATGAATATGTCACCTGTCCGCACATCAAAGAATTCA
AAACCTTATTTCAATTTGAATGTGGAAGTGGAAGAAGGGACTGTCGTCAA
AGCAGTCTGTCATGCCCCCAGAAAAAGGAGGTTGTTTGAGGAGATGTCCA
AAAGAAAGGCAGCTGAACAATCTTCAAGTGATGACACTCAAGGCTGAAGC
CATCGGAATAGGAGTTAGCATCAGCCAAGCCCAATCATACAGTGATGGCA
CCCTCAAGATTTATGAGAAGACGTCAGTCAAACATGAAGTGTTGGGCTTC
AAACCCAAATACCAGATTGAAATTACCACACTGTCAAAAGTCGTAAATGA
AGTGCCAGTTGGCAATTATGTCAACGTTCAAGGTGTCGTCCAGCTGGATG
AAGTCGAACAAGTTATGACATCCGGTGGTGAAATACCAATGAGGCGAGGC
CACATTTCAGATGAAAACGAATTTATTAAAATTGTACTTTGGCGTGAGTA
TGCAACATTGCTAACAGATAAGCAATGTTATACGTTGTGTAACTTGAAAA
AAGGGATCTACAACAATGTTGAAGAACTGCATACCTCTCATACAACATCT
TTCAAACTTGCCAAACAACCTACTTCATTTAAAACACCTGATAGTGGTGA
TGCGACTGAATTAACCAACTGTTCCATTGTTGGTACCAAATTTATCCACA
CTGTAAAATGCTTGTTCTGTACTGCCAAAATCGATTGCAAGGAGGAAACA
GGAGATGTTGAGTGTCCACATTGTAAGGGTACCTCAGTGATATCATCGAT
TGGTCAACAGAAGTATTGGAAATTGTTTGTCAACCATGATGGGAGAATTG
TAAAGCTCGACGTTACTGCAGATAAGCTTCCAACGTTAAAGTATGACCAG
GTAAAATCTTATTTGTTGACAAACAAATTTGCCATTACATACCTTTCTAT
GTCTGGATTGATAAGCAGAATGTTGTTGGTTAGAAAACCACAACCTGAAG
AGGATAAGGAAAACTTGTTCAGAAAACCACAATCTGAAGAGGATAAGGAA
ACCACAACCTGAATGTATCAGTCAAGGGTTACATCATGAATATGTCACCT
GTCCGCACATCAAAGAATTCAAAACCTTATTTCAATTTGAATGTGGAAGT
GGAAGAAGGGACTGTCGTCAAAGCAGTCTGTCATGCCCCCAGAAAAAGGA
GGTTGTTTGAGGAGATGTCCAAAAGAAAGGCAGCTGAACAATCTTCAAGT
GATGACACTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001018XLOC_001018Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001977-proteinTCONS_00001977-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001977-exon-sc0000012-1575043694:1113444..1113509TCONS_00001977-exon-sc0000012-1575043694:1113444..1113509Clytia hemisphaericaexon
TCONS_00001977-exon-sc0000012-1575043694:1113186..1113251TCONS_00001977-exon-sc0000012-1575043694:1113186..1113251Clytia hemisphaericaexon
TCONS_00001977-exon-sc0000012-1575043694:1112317..1112468TCONS_00001977-exon-sc0000012-1575043694:1112317..1112468Clytia hemisphaericaexon
TCONS_00001977-exon-sc0000012-1575043694:1110662..1112205TCONS_00001977-exon-sc0000012-1575043694:1110662..1112205Clytia hemisphaericaexon
TCONS_00001977-exon-sc0000012-1510915933:1113444..1113509TCONS_00001977-exon-sc0000012-1510915933:1113444..1113509Clytia hemisphaericaexon
TCONS_00001977-exon-sc0000012-1510915933:1113186..1113251TCONS_00001977-exon-sc0000012-1510915933:1113186..1113251Clytia hemisphaericaexon
TCONS_00001977-exon-sc0000012-1510915933:1112317..1112468TCONS_00001977-exon-sc0000012-1510915933:1112317..1112468Clytia hemisphaericaexon
TCONS_00001977-exon-sc0000012-1510915933:1110662..1112205TCONS_00001977-exon-sc0000012-1510915933:1110662..1112205Clytia hemisphaericaexon
TCONS_00001977-exon-sc0000012-1491911889:1113444..1113509TCONS_00001977-exon-sc0000012-1491911889:1113444..1113509Clytia hemisphaericaexon
TCONS_00001977-exon-sc0000012-1491911889:1113186..1113251TCONS_00001977-exon-sc0000012-1491911889:1113186..1113251Clytia hemisphaericaexon
TCONS_00001977-exon-sc0000012-1491911889:1112317..1112468TCONS_00001977-exon-sc0000012-1491911889:1112317..1112468Clytia hemisphaericaexon
TCONS_00001977-exon-sc0000012-1491911889:1110662..1112205TCONS_00001977-exon-sc0000012-1491911889:1110662..1112205Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:1110662..1113509 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1395 1.28214 0.34736 0.461208 9.24959 6.80651 5.03495 5.69567 2.82529 2.85914 3.44118 2.69992 1.92242 1.68 1.34386 1.46887 1.08497 1.6018 3.41348 3.242 1.21033 2.0462 2.01003 2.69543 0.0470548 0.0419953 5.33799 4.746 1.94577 2.05677
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001977 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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