|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001975 ID=TCONS_00001975|Name=TCONS_00001975|organism=Clytia hemisphaerica|type=transcript|length=1773bp
GAAAATAGTCAGGGAAGAGTTCAGAAGGCTTCCATTTTTGGTTCCTTCGT
TCTTATATCAAAAAAAGAAGGAAATCTTTTATCGGGCGAATTTTTTCTTC
TCAATTTTGCCCTTCTTCGTTTTTTCGTAcaattttgaagatattttaat
tTTCGTTTGGTATATGAAggaattttttgctcaaaacaaaaatggataaa
attgACAGCAAACAATTCGTCAATAAACTTgTATCAGGCATGTTTGAAAC
AAATTTAGACGAATCACACCTCCTGGGTTCGCATTTAGACCCGATGAGTA
AATATCTACCCAAACCAACTGGAGGTGTTAAAATGCCGACCGCGTTTTTA
AACAGTTTACACGCAGCCAATCCTGATCCCACACAATACGATCCTCATGA
TATCCTCGATCAAATTTCGGCTTCTTTACAACCGAATGGCGCTTCTGAAA
ATTCTTACGACCATGGTCCAACTTCAACAAACGCTACAAATTATTCAACA
TCACATTTGTTGTCACCTTCCTCGACCTCATTTTCGTCATCAACTTTCAG
TAATGGTAATTTCTCTACCTTCAATAATACCTTTGCTGCAGCTGCAGCCG
CTGCGGCCGCAGCAGCCGCCCAAGTCGGTCAAGAGAGCGAATGTACGCCG
CGTGAACTGGAATGGTTCGCCGAACGCTTCAAACAACGTCGTATCAAATT
AGGCGTCACACAGGCGGATGTCGGTGGTGCACTGGCACATTTAAAGTTAC
CAGGAGTTGGTAGTTTGAGTCAATCTACGATTTGTCGTTTCGAATCACTA
ACACTTAGCCATAATAACATGATGGCTTTAAAACCTGTTCTCTCTGCCTG
GTTAGATGAAGCAGAACGAGCAAACCGTATGAAAGCTAAAGACAGTGCCT
TTTTACCAAATGCTGATAAAAAACGCAAGCGTACGTCCATAGGGGCTGCT
GAAAAACGCTCTTTAGAGGCTTATTTTGCAATGCAGCCAAGACCATCAAG
TGATAAGATTGCAGCCATTGCAGAGAAATTAGACTTGTCCAAAAATGTTG
TACGTGTATGGTTTTGTAATCAAcgacaaaagaagaaaagaatgaaGTTT
TCAGttcattaaaattttgtttggtcgtgatgaaaaataaaaacactgac
GACATCTTTTTTGTAGATATATTTATGATCATCAACACACCTCGTCCCAT
CTAAAATTAAAAGGGCTTGGGAGAAATAAGTAAATATGTTTGATTTGCCT
CaagagtaaaaaaaagaaaatttgactaGGTTAGATATCATTTTTACAGG
GAGTTTTGTGTTCCTATCTTCTGACAGGTTTTTGCCCATTTTGAAACCAT
ATTTTGTGTGTGCATGTTTTTATAAATCTTCATCAAGTTCTACAGTAACT
TCTGGAGTCAtagttctttttcaaattttactacttctgtttattttatt
ttattgtatttgtatttttattttgtccttgtatattttggcttttttat
gccattttttgttttctttccttttttatttttccttttttttatcattt
cttcTTAAATTAATGTATATAGTTtataaatattataaaataaaatgccT
TTTGTATTATTTTGCACATTTTCGAGGTTCCTAAATGACCTCCTAAGTGA
CCtatgtattattattattgtttatTCGAATTTTGcgacaaagaaaattt
ctttttttatttatgatgtTTTGTCAAAGAAATCGTACTTTTTGATGaca
aaaagaaattacaaaagaaaaac Run BLAST on NCBI transcript from alignment at sc0000012:1098370..1101742- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001975 ID=TCONS_00001975|Name=TCONS_00001975|organism=Clytia hemisphaerica|type=transcript|length=3373bp|location=Sequence derived from alignment at sc0000012:1098370..1101742- (Clytia hemisphaerica)
GAAAATAGTCAGGGAAGAGTTCAGAAGGCTTCCATTTTTGGTTCCTTCGT
TCTTATATCAAAAAAAGAAGGAAATCTTTTATCGGGCGAATTTTTTCTTC
TCAATTTTGCCCTTCTTCGTTTTTTCGTACAATTTTGAAGATATTTTAAT
TTTCGTTTGGTATATGAAGGAATTTTTTGCTCAAAACAAAAATGGATAAA
ATTGACAGCAAACAATTCGTCAATAAACTTGTAAGTCCCTTTTTAGGACC
TTTTTTTTGTGGTAGTATTTCATGGCTATACTTAAAAAAAAAATCAGAAT
TGGAGAGTTTAAAAAAAATGTTTTATAGTTTTGAAGAACGCTATGATAGA
TGCATTCAAATCATTCAATAAAATATGGTCACAAAACTCTTCCTTCATCA
ATTATTGATCCACTTCAATTGATTTGTTATGGACGCGAAAATGCCTGCTT
TCAAATGGAAAAAAAAATCAATGATTCAATTTTGAATTGAAATTTTTTAT
AAAATATTCGTTATTCATCTGTTTTTATGCGAAATATATAGCGGCGATAG
AAAAGTGATAATTTATGTTAATTGCGTGTAATTAATTCTATTTCACGGCT
TTATTCAGAAGAAGTGCTGTTTTCAAATTTCAAGTGTTTGTTATGTTTGG
GTGTGTAGAAAACGCCTACTTTTAATTNCGTTGTTATAATAATTTTCTTG
TCGAGGTTTAAAATTAAAGAGAGTGAGAGAGGAGAAGAAGAAGAAGGCTC
ACTCACACAACATAAAAAAAAGAGAGAAAAAATAAATAAAGAAAGAAAGA
GGGGGAGAAAAAAAAGTGAAGATAAAAGAAAAATTTGATCGCCTGGATCA
GTTGAAAATAGTCAGGGAAGAGTTCAGAAGGCTTCCATTTTTGGTTCCTT
CGTTCTTATATCAAAAAAAGAAGGAAATCTTTTATCGGGCGAATTTTTTC
TTCTCAATTTTGCCCTTCTTCGTTTTTTCGTACAATTTTGAAGATATTTT
AATTTTCGTTTGGTATATGAAGGAATTTTTTGCTCAAAACAAAAATGGAT
AAAATTGACAGCAAACAATTCGTCAATAAACTTGTAAGTCCCTTTTTAGG
ACCTTTTTTTTGTGGTAGTATTTCATGGCTATACTTAAAAAAAAAATCAG
AATTGGAGAGTTTAAAAAAAATGTTTTATAGTTTTGAAGAACGCTATGAT
AGATGCATTCAAATCATTCAATAAAATATGGTCACAAAACTCTTCCTTCA
TCAATTATTGATCCACTTCAATTGATTTGTTATGGACGCGAAAATGCCTG
CTTTCAAATGGAAAAAAAAATCAATGATTCAATTTTGAATTGACATTTTT
TATAAAATATTCGTTATTCATCTGTTTTTATGCGAGATATATAGCGGCGA
TAGAAAAGTGATAATTTATGTTAATTGCGTGTAATTAATTCTATTTCACG
GCTTTATTCAGAATAAGTGCTGTTTTCAAATTTCAAGTGTTTGTTATGTT
TGGGTGTGTAGAAAACGCCTACTTTTAATTATTATCATGCAGAATTATAG
CGGCTCTTAAAATGGCCTTTGGCATATAGCTGTATATGAAAAATTTGAAG
GGGTTGAAGGGACCAGCTCTTATTGAAGCTAGTTTACATAAACATCGGAA
AGATTCTTTTTTAAAGTTAGTGTTTTGTGCTATTGTTTTCCGGGTATTAT
GATGTTTGGTCGTCTTCCGATCGTGTAAATCGATGAATGAATCGATAATT
TCAAAGGAGAACCGAAGAGTCATTCCCTGGCCACTTTGACATCGACATTA
TGTAAATATCTTTTAATTTCTATTTTTCAGGTATCAGGCATGTTTGAAAC
AAATTTAGACGAATCACACCTCCTGGGTTCGCATTTAGACCCGATGAGTA
AATATCTACCCAAACCAACTGGAGGTGTTAAAATGCCGACCGCGTTTTTA
AACAGTTTACACGCAGCCAATCCTGATCCCACACAATACGATCCTCATGA
TATCCTCGATCAAATTTCGGCTTCTTTACAACCGAATGGCGCTTCTGAAA
ATTCTTACGACCATGGTCCAACTTCAACAAACGCTACAAATTATTCAACA
TCACATTTGTTGTCACCTTCCTCGACCTCATTTTCGTCATCAACTTTCAG
TAATGGTAATTTCTCTACCTTCAATAATACCTTTGCTGCAGCTGCAGCCG
CTGCGGCCGCAGCAGCCGCCCAAGTCGGTCAAGAGAGCGAATGTACGCCG
CGTGAACTGGAATGGTTCGCCGAACGCTTCAAACAACGTCGTATCAAATT
AGGCGTCACACAGGCGGATGTCGGTGGTGCACTGGCACATTTAAAGTTAC
CAGGAGTTGGTAGTTTGAGTCAATCTACGATTTGTCGTTTCGAATCACTA
ACACTTAGCCATAATAACATGATGGCTTTAAAACCTGTTCTCTCTGCCTG
GTTAGATGAAGCAGAACGAGCAAACCGTATGAAAGCTAAAGACAGTGCCT
TTTTACCAAATGCTGATAAAAAACGCAAGCGTACGTCCATAGGGGCTGCT
GAAAAACGCTCTTTAGAGGCTTATTTTGCAATGCAGCCAAGACCATCAAG
TGATAAGATTGCAGCCATTGCAGAGAAATTAGACTTGTCCAAAAATGTTG
TACGTGTATGGTTTTGTAATCAACGACAAAAGAAGAAAAGAATGAAGTTT
TCAGTTCATTAAAATTTTGTTTGGTCGTGATGAAAAATAAAAACACTGAC
GACATCTTTTTTGTAGATATATTTATGATCATCAACACACCTCGTCCCAT
CTAAAATTAAAAGGGCTTGGGAGAAATAAGTAAATATGTTTGATTTGCCT
CAAGAGTAAAAAAAAGAAAATTTGACTAGGTTAGATATCATTTTTACAGG
GAGTTTTGTGTTCCTATCTTCTGACAGGTTTTTGCCCATTTTGAAACCAT
ATTTTGTGTGTGCATGTTTTTATAAATCTTCATCAAGTTCTACAGTAACT
TCTGGAGTCATAGTTCTTTTTCAAATTTTACTACTTCTGTTTATTTTATT
TTATTGTATTTGTATTTTTATTTTGTCCTTGTATATTTTGGCTTTTTTAT
GCCATTTTTTGTTTTCTTTCCTTTTTTATTTTTCCTTTTTTTTATCATTT
CTTCTTAAATTAATGTATATAGTTTATAAATATTATAAAATAAAATGCCT
TTTGTATTATTTTGCACATTTTCGAGGTTCCTAAATGACCTCCTAAGTGA
CCTATGTATTATTATTATTGTTTATTCGAATTTTGCGACAAAGAAAATTT
CTTTTTTTATTTATGATGTTTTGTCAAAGAAATCGTACTTTTTGATGACA
AAAAGAAATTACAAAAGAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001975-exon-sc0000012-1575043694:1101513..1101742 | TCONS_00001975-exon-sc0000012-1575043694:1101513..1101742 | Clytia hemisphaerica | exon |
| TCONS_00001975-exon-sc0000012-1575043694:1098370..1099912 | TCONS_00001975-exon-sc0000012-1575043694:1098370..1099912 | Clytia hemisphaerica | exon |
| TCONS_00001975-exon-sc0000012-1510915933:1101513..1101742 | TCONS_00001975-exon-sc0000012-1510915933:1101513..1101742 | Clytia hemisphaerica | exon |
| TCONS_00001975-exon-sc0000012-1510915933:1098370..1099912 | TCONS_00001975-exon-sc0000012-1510915933:1098370..1099912 | Clytia hemisphaerica | exon |
| TCONS_00001975-exon-sc0000012-1491911889:1101513..1101742 | TCONS_00001975-exon-sc0000012-1491911889:1101513..1101742 | Clytia hemisphaerica | exon |
| TCONS_00001975-exon-sc0000012-1491911889:1098370..1099912 | TCONS_00001975-exon-sc0000012-1491911889:1098370..1099912 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:1098370..1101742 - |
Blast
BLAST of TCONS_00001975 vs. Swiss-Prot (Human)
Match: PO4F3 (POU domain, class 4, transcription factor 3 OS=Homo sapiens GN=POU4F3 PE=1 SV=1) HSP 1 Score: 256.529 bits (654), Expect = 3.910e-79 Identity = 124/155 (80.00%), Postives = 135/155 (87.10%), Query Frame = 3
Query: 639 ECTPRELEWFAERFKQRRIKLGVTQADVGGALAHLKLPGVGSLSQSTICRFESLTLSHNNMMALKPVLSAWLDEAERANRMKAKDSAFLPNADKKRKRTSIGAAEKRSLEAYFAMQPRPSSDKIAAIAEKLDLSKNVVRVWFCNQRQKKKRMKFS 1103
E PRELE FAERFKQRRIKLGVTQADVG ALA+LK+PGVGSLSQSTICRFESLTLSHNNM+ALKPVL AWL+EAE A R K +++KRKRTSI A EKRSLEAYFA+QPRPSS+KIAAIAEKLDL KNVVRVWFCNQRQK+KRMK+S
Sbjct: 181 ESDPRELEAFAERFKQRRIKLGVTQADVGAALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYS 335
The following BLAST results are available for this feature:
|
