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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001970 ID=TCONS_00001970|Name=TCONS_00001970|organism=Clytia hemisphaerica|type=transcript|length=2802bpRun BLAST on NCBI protein sequence of TCONS_00001970-protein >TCONS_00001970-protein ID=TCONS_00001970-protein|Name=TCONS_00001970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=721bp MSNNWETVVNKKKSHVTKADVRRVKKKFVEGEVPKVEKKDPLQLEKTAYERun BLAST on NCBI transcript from alignment at sc0000012:1027087..1045747- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001970 ID=TCONS_00001970|Name=TCONS_00001970|organism=Clytia hemisphaerica|type=transcript|length=18661bp|location=Sequence derived from alignment at sc0000012:1027087..1045747- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000012:1027087..1045747- >TCONS_00001970 ID=TCONS_00001970|Name=TCONS_00001970|organism=Clytia hemisphaerica|type=CDS|length=41154bp|location=Sequence derived from alignment at sc0000012:1027087..1045747- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00001970 vs. Swiss-Prot (Human)
Match: TM214 (Transmembrane protein 214 OS=Homo sapiens GN=TMEM214 PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 1.258e-16 Identity = 117/548 (21.35%), Postives = 225/548 (41.06%), Query Frame = 3
Query: 378 LQLEKTAYEAGFRN--DDDSDKENYPSRIPFEQNEQKQSPRNVTRRKDKPKPKPAQTVNLGEFIKKVDIDGLKLTIQSIQEKFNNHPLIWLKEVAAWLKSQIKGPAEKTDLAFLKHETDFPVSELDKAVHKLLEDLMKKCDKKNLATFYISLIAGMVTDIQQ--GNSTLADRIMIQLLCQLEPTVIKENCN---EIVAAKSKTAETYIAVMWALGQP-VGTLENRLSVWWSSMFAVLDKKRHAVAAVHYLKEILSELEDKPIQKPMLDTESFLQLYNVIFGKSPLQH-TSSLIDELKPFASLMKRMLLADKPCKERKNIFMQLLDELKNMEEGRERNMICDVLSDCLVSNPDLLEWWSENILAYLRQSSVLLKYIEETDVAERMRKGRRHKTSRPMVTAAQTMIGKMLKVKDRSRFDKKPGFRECRKICNYFINEEMERRQQTSSVW-KLLKYFFIFTTIFVAVDLYTNKGYPGSRTNVFLKKYGL----EERLMTGYNFADQKRMQAQSFITTNAPIYYAKVSPYVDPVMEKTGYYTRITCEAIYKH 1979
+Q T YE GF N + ++ P + ++ K+ P+ V ++ + K + +L E +K +D+ L+ + Q F+ +P IWLK++A++L +++ P + L+ +H D+P S + + + ++ L+ K +L F+ + M+ ++ + G S RI IQ + Q +P + N E++ + + +MWALGQ L L VW M VL K + A+ YL +L + M+ + F L + F P T SL ++L +K + KP F L + + L++CL +P W + +L QSS+ E++ K K + + Q+ LK+ ++ K + C+ +++ Q W +LL +F F+ DL ++ + S T L+ G ++ Y+++ +Q S++ P++ + + V P ++ +T T + H
Sbjct: 53 IQTTSTLYERGFENIMKRQNKEQVPPPAVEPKKPGNKKQPKKVATPPNQNQ-KQGRFRSLEEALKALDVADLQKELDKSQSVFSGNPSIWLKDLASYLNYKLQAPLSEPTLS--QHTHDYPYSLVSRELRGIIRGLLAKA-AGSLELFFDHCLFTMLQELDKTPGESLHGYRICIQAILQDKPKIATANLGKFLELLRSHQSRPAKCLTIMWALGQAGFANLTEGLKVWLGIMLPVLGIKSLSPFAITYLDRLLLMHPNLTKGFGMIGPKDFFPLLD--FAYMPNNSLTPSLQEQLCQLYPRLKVLAFGAKPDSTLHTYFPSFLSRATPSCPPEMKKELLSSLTECLTVDPLSASVWRQLYPKHLSQSSL--LLEHLLSSWEQIPK----KVQKSLQETIQS-----LKLTNQELLRKGSSNNQDVVTCDMACKGLLQQVQGPRLPWTRLLLLLLVFAVGFLCHDLRSHSSFQASLTGRLLRSSGFLPASQQACAKLYSYS----LQGYSWLGETLPLWGSHLLTVVRPSLQLAWAHTNATVSFLSAH 579 The following BLAST results are available for this feature:
BLAST of TCONS_00001970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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