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TCONS_00001964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001964
Unique NameTCONS_00001964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001964 ID=TCONS_00001964|Name=TCONS_00001964|organism=Clytia hemisphaerica|type=transcript|length=3617bp
CCTCGATCAAGGCTTTGATGAAAGGAGCTATGACATCCTTATGTAATCCT
TCTATGGTAACTAATTGGTCGATTTTTGCTTGCTTTCTTGTGTCTAGAGT
ATTTTTATGTCCATGGACTGAATGCTTGGTAGTTGAATCCAAATGAGCAA
CTTTTTTCCTTAGAAATAAAAACACACTTTGAAACAACTATATTATACAA
ATTTCAAGATCTTAAATTCAGAAAGTAtcaacttttgcaaaaaagtggaa
tTTGCTCAATTTGATCAAAATCTACAGTCTGACTATAAATGATTGGCTCA
GATGATATCACGCCCTAATGTTCATGAAAAATAATCATTATACCGAACAT
CATTTGACCGAACAAATATAAGACATGACTACTGTTAGCTACAAATCATA
CGTTTACATTACAATTTCTTGAGCTGACCGCATTGTGGGCAAACCAATCA
CAATGCGGGCTGCTTCCTTTCTAGTCCCAATCCACCTGTCCATGATTCGT
TCTCTTTGTGAATTCAAACTACGGGGTCTGCTACTAGTACCCATATTTAA
GTTTGCGCGCCCACCGATGGGCGGATGACGGGCGTTTCAACACCCGTGAC
ACATGGTTTCATTGTCATTCCAGTGTGCCAACATCATGTTGcacatcaaa
actaaaaaaaccaTCTTACAATGTGTCTTTTAAGGGTAAATGGTATCTGT
GCAAATCTGGAACAACCAAACATCCAGTACTTGGTCCTCCAACTTCCAAT
TCATACCAATGCAACGGTTGTTCAACTTTATCAAagcaaattaatttttc
ttttggagGAGAGTACAGATCTAAAGTTTCCAAATTAACTTGGAAGCATA
CAGTCCAGTTTGTccgacttttttatttttttattttgaaagcaaaattt
gatgACTTCGGAACTTTTTGGAAGCTGTCTGCAAAGTTTCCAATATGAAT
ACGCTGAAAATTACGATTTTCTTACCAGGTTTTAACGAAATCCAACCTTC
GAAtctttgataaatttatttCCTAAGGCGGTATTAGACGATTTCGAACC
TGAAAAATTTCCAATATTGAATTCACAGGTGTTTCATGCCTTATAGAGCA
ACCGTATTTTTCGGATTTAAGGAGTATtaaaatttagcattttttaaagt
attttgatTAATAAGTTATGATACTTAGACATGATTCTCAGGCTAGAAAA
TCACTAAACAGTGAACCACTCGGCAGGTGCACAAAGAATGTACAATCATA
CAGGACCATCCTACCACTGATTAATAAGTTATGATACTTAGACATGATTC
TCAGGCTAGAAAATCACTAAACAGTGAACCACTCGGCAGGTGCACAAGGA
ATGTACAATCATACAGGACCATCCTACCACTGATTAATAAGTTATGATAC
TTAGACATGATTCTCAGGCTAGAAAGTCACTAAACAGTGAACCACTCGGC
AGGTGCACAAAGAATGTACAATCATACAGGACCATCCTACCACTGATTAA
TAAGTTATGATACTTAGACATGATTCTCAGGCTAGAAAGTCAATAATCAG
TGAACCACTCGGGgctagaaaaaaaacaacaatattcATTATTCCTCAGA
CTTACACTTTTGTAATAAAGTTTTCTTCTCCACTTTttgtcttcttcttt
cttccaATACAAAAATAGATAAGCACATATGGTAGTCAGCTTAAATTTTC
TTCTCGACGAATATCAGCAAGTGGCGTACAAATCAAGGTACAATCAAACA
GGACCATCTTACTACTTTTTAAGTTATAATATTACTCTCTGAATCGCTGT
CTGAAACATTTTCCGAATTATTTGAATCATTGTCCAACCCGATGATGAAT
CTCTCCTCGTTATCGAGTCCACTGAAGTCAATTCTCCataatttcttttt
aacttttattgagcttttttcgatttttgcccATTTCGTAGGCGTGGCAT
TATCTAATGCCTTATTCACGAGGTCCTGAACATCTTTAATTTTATAGGTG
GCGTTTTTTTCTAGCAACATACTTCTGATTTAACTTGAGTTCTGACAATT
TCGGTAGGATTCAACTCCGAGAATGTGAATGTTTTCAATACAAAACCTTT
CAGTGATTTTCTCCAAATTGAATTCTTTgggaatgaaaattgatttgcTT
TTTACGAGTAAAATTGGTCTTCAAAAGGGATTTTTCCCCTCGACCAGCCT
TGAGTCTCAGCTTTCTTCCATGATGTTTTTTGGGTTTTGGACATTTTCCG
TTTCCCGAGAACGGTAGCGAGCGTCCTTTATGTCATTGAAATGAATGTCG
ATTCGAAATGATTGATTATAGTCGTTACATGTTTGATAGGGGAAATGTTA
gtgaataaaaatttttcacattggattcggacattaaaagtaaaagtatt
tttgtctccgctgcaaattatatgGAGACAGGCATTTGTATTTGGCGCGG
AGTCCCTTTCCTTTGATTCACGTCTTACCCTTTTTGGAATTGTGCCAATT
ACTCATATTCCATCTTGGTCGTGCGCATTCTCTGTGTGAGCTCCTCCTTT
GTTTCATTCTGCTCTAATGCTTGCTCCAACAAAACTTTGTTTATTTGGTT
GAAAAAATCAGTTAATCGGGGTGGTGTGCATAACATTAAAGCCTTTGGTC
TTTCGTTTGTATTTACCGCTTTCTTTAATTTCTGGCGCTAGtactttagg
tgtacaaaccttcgcgagcagaaactttcgtgaggacgaaaaatcgggaa
aaagattttttcgcgagcataaactttcgcgaatgaggcatctttttata
aaaaaattcaagttttCAGTGCGTGAAACCAGTGTTACGATTGTTCAAAT
GTACTCGTCAAACCACAATTGGTAGACTTTTGCATAATTTCTACACTAAA
TTTATCTTTTATCATCAAAgaggaaagattttttttcgcgagcataaact
tttgcaaattgctctttcaagaattttcaaagcattttccaattttgtga
catcttttaaaaagctttttaaattgaatttaatAGATTATATCTCAATT
TTCTTTGCCTCTCTTTGCCCAGGCTGGAAATGTGTTTATTTTTTGCCCAG
TTTCAGcctaattgttcttataaagtgagttctaataaaaatgaaaagtg
aagTGTGTCGAACAAGGATGTTATAACGTTCAAGGCTTTTCATGGCTTTC
GTGGCTGTCCTACACTTTTGGCTGACGACTTTTCTTAATTCATTTGGTTT
CTTTCTTAACTCAGTCATCTCTGTTGGGTGTTTTTGGTCCACTCTGGCAA
GTGCCTTGTTGAGCTGAGTTGGCAACAGCGCGTCGCAAGTGATTTGCTGA
CCCTTGTACAAACGATTCACTGCTGAGTAACGGCGTTTCGACAACTCTTG
CTCTGAGAAGGAATTTTGAAGTTCTTTTTTGATCATCTGTAGCTTGATTT
GCGTAAAATTGTTTCAGTGCATCTTTTTCTTTAGAGCGTCCCCAATTAAT
TGCTTCACTGGACGATAAGTTATCAGACGGGCGATTTATAATTTTATGAA
CGATATGTGTTGTTTTGGGTTTTACTGTGGGTTGTGACTTTACAATGGTG
TTAACCCTGGACGTCCA
Run BLAST on NCBI

protein sequence of TCONS_00001964-protein

>TCONS_00001964-protein ID=TCONS_00001964-protein|Name=TCONS_00001964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
WTSRVNTIVKSQPTVKPKTTHIVHKIINRPSDNLSSSEAINWGRSKEKDA
LKQFYANQATDDQKRTSKFLLRARVVETPLLSSESFVQGSANHLRRAVAN
SAQQGTCQSGPKTPNRDD
Run BLAST on NCBI

transcript from alignment at sc0000012:972043..975659-

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001964 ID=TCONS_00001964|Name=TCONS_00001964|organism=Clytia hemisphaerica|type=transcript|length=3617bp|location=Sequence derived from alignment at sc0000012:972043..975659- (Clytia hemisphaerica)
CCTCGATCAAGGCTTTGATGAAAGGAGCTATGACATCCTTATGTAATCCT TCTATGGTAACTAATTGGTCGATTTTTGCTTGCTTTCTTGTGTCTAGAGT ATTTTTATGTCCATGGACTGAATGCTTGGTAGTTGAATCCAAATGAGCAA CTTTTTTCCTTAGAAATAAAAACACACTTTGAAACAACTATATTATACAA ATTTCAAGATCTTAAATTCAGAAAGTATCAACTTTTGCAAAAAAGTGGAA TTTGCTCAATTTGATCAAAATCTACAGTCTGACTATAAATGATTGGCTCA GATGATATCACGCCCTAATGTTCATGAAAAATAATCATTATACCGAACAT CATTTGACCGAACAAATATAAGACATGACTACTGTTAGCTACAAATCATA CGTTTACATTACAATTTCTTGAGCTGACCGCATTGTGGGCAAACCAATCA CAATGCGGGCTGCTTCCTTTCTAGTCCCAATCCACCTGTCCATGATTCGT TCTCTTTGTGAATTCAAACTACGGGGTCTGCTACTAGTACCCATATTTAA GTTTGCGCGCCCACCGATGGGCGGATGACGGGCGTTTCAACACCCGTGAC ACATGGTTTCATTGTCATTCCAGTGTGCCAACATCATGTTGCACATCAAA ACTAAAAAAACCATCTTACAATGTGTCTTTTAAGGGTAAATGGTATCTGT GCAAATCTGGAACAACCAAACATCCAGTACTTGGTCCTCCAACTTCCAAT TCATACCAATGCAACGGTTGTTCAACTTTATCAAAGCAAATTAATTTTTC TTTTGGAGGAGAGTACAGATCTAAAGTTTCCAAATTAACTTGGAAGCATA CAGTCCAGTTTGTCCGACTTTTTTATTTTTTTATTTTGAAAGCAAAATTT GATGACTTCGGAACTTTTTGGAAGCTGTCTGCAAAGTTTCCAATATGAAT ACGCTGAAAATTACGATTTTCTTACCAGGTTTTAACGAAATCCAACCTTC GAATCTTTGATAAATTTATTTCCTAAGGCGGTATTAGACGATTTCGAACC TGAAAAATTTCCAATATTGAATTCACAGGTGTTTCATGCCTTATAGAGCA ACCGTATTTTTCGGATTTAAGGAGTATTAAAATTTAGCATTTTTTAAAGT ATTTTGATTAATAAGTTATGATACTTAGACATGATTCTCAGGCTAGAAAA TCACTAAACAGTGAACCACTCGGCAGGTGCACAAAGAATGTACAATCATA CAGGACCATCCTACCACTGATTAATAAGTTATGATACTTAGACATGATTC TCAGGCTAGAAAATCACTAAACAGTGAACCACTCGGCAGGTGCACAAGGA ATGTACAATCATACAGGACCATCCTACCACTGATTAATAAGTTATGATAC TTAGACATGATTCTCAGGCTAGAAAGTCACTAAACAGTGAACCACTCGGC AGGTGCACAAAGAATGTACAATCATACAGGACCATCCTACCACTGATTAA TAAGTTATGATACTTAGACATGATTCTCAGGCTAGAAAGTCAATAATCAG TGAACCACTCGGGGCTAGAAAAAAAACAACAATATTCATTATTCCTCAGA CTTACACTTTTGTAATAAAGTTTTCTTCTCCACTTTTTGTCTTCTTCTTT CTTCCAATACAAAAATAGATAAGCACATATGGTAGTCAGCTTAAATTTTC TTCTCGACGAATATCAGCAAGTGGCGTACAAATCAAGGTACAATCAAACA GGACCATCTTACTACTTTTTAAGTTATAATATTACTCTCTGAATCGCTGT CTGAAACATTTTCCGAATTATTTGAATCATTGTCCAACCCGATGATGAAT CTCTCCTCGTTATCGAGTCCACTGAAGTCAATTCTCCATAATTTCTTTTT AACTTTTATTGAGCTTTTTTCGATTTTTGCCCATTTCGTAGGCGTGGCAT TATCTAATGCCTTATTCACGAGGTCCTGAACATCTTTAATTTTATAGGTG GCGTTTTTTTCTAGCAACATACTTCTGATTTAACTTGAGTTCTGACAATT TCGGTAGGATTCAACTCCGAGAATGTGAATGTTTTCAATACAAAACCTTT CAGTGATTTTCTCCAAATTGAATTCTTTGGGAATGAAAATTGATTTGCTT TTTACGAGTAAAATTGGTCTTCAAAAGGGATTTTTCCCCTCGACCAGCCT TGAGTCTCAGCTTTCTTCCATGATGTTTTTTGGGTTTTGGACATTTTCCG TTTCCCGAGAACGGTAGCGAGCGTCCTTTATGTCATTGAAATGAATGTCG ATTCGAAATGATTGATTATAGTCGTTACATGTTTGATAGGGGAAATGTTA GTGAATAAAAATTTTTCACATTGGATTCGGACATTAAAAGTAAAAGTATT TTTGTCTCCGCTGCAAATTATATGGAGACAGGCATTTGTATTTGGCGCGG AGTCCCTTTCCTTTGATTCACGTCTTACCCTTTTTGGAATTGTGCCAATT ACTCATATTCCATCTTGGTCGTGCGCATTCTCTGTGTGAGCTCCTCCTTT GTTTCATTCTGCTCTAATGCTTGCTCCAACAAAACTTTGTTTATTTGGTT GAAAAAATCAGTTAATCGGGGTGGTGTGCATAACATTAAAGCCTTTGGTC TTTCGTTTGTATTTACCGCTTTCTTTAATTTCTGGCGCTAGTACTTTAGG TGTACAAACCTTCGCGAGCAGAAACTTTCGTGAGGACGAAAAATCGGGAA AAAGATTTTTTCGCGAGCATAAACTTTCGCGAATGAGGCATCTTTTTATA AAAAAATTCAAGTTTTCAGTGCGTGAAACCAGTGTTACGATTGTTCAAAT GTACTCGTCAAACCACAATTGGTAGACTTTTGCATAATTTCTACACTAAA TTTATCTTTTATCATCAAAGAGGAAAGATTTTTTTTCGCGAGCATAAACT TTTGCAAATTGCTCTTTCAAGAATTTTCAAAGCATTTTCCAATTTTGTGA CATCTTTTAAAAAGCTTTTTAAATTGAATTTAATAGATTATATCTCAATT TTCTTTGCCTCTCTTTGCCCAGGCTGGAAATGTGTTTATTTTTTGCCCAG TTTCAGCCTAATTGTTCTTATAAAGTGAGTTCTAATAAAAATGAAAAGTG AAGTGTGTCGAACAAGGATGTTATAACGTTCAAGGCTTTTCATGGCTTTC GTGGCTGTCCTACACTTTTGGCTGACGACTTTTCTTAATTCATTTGGTTT CTTTCTTAACTCAGTCATCTCTGTTGGGTGTTTTTGGTCCACTCTGGCAA GTGCCTTGTTGAGCTGAGTTGGCAACAGCGCGTCGCAAGTGATTTGCTGA CCCTTGTACAAACGATTCACTGCTGAGTAACGGCGTTTCGACAACTCTTG CTCTGAGAAGGAATTTTGAAGTTCTTTTTTGATCATCTGTAGCTTGATTT GCGTAAAATTGTTTCAGTGCATCTTTTTCTTTAGAGCGTCCCCAATTAAT TGCTTCACTGGACGATAAGTTATCAGACGGGCGATTTATAATTTTATGAA CGATATGTGTTGTTTTGGGTTTTACTGTGGGTTGTGACTTTACAATGGTG TTAACCCTGGACGTCCA

Coding sequence (CDS) from alignment at sc0000012:972043..975659-

>TCONS_00001964 ID=TCONS_00001964|Name=TCONS_00001964|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0000012:972043..975659- (Clytia hemisphaerica)
TCAGTCATCTCTGTTGGGTGTTTTTGGTCCACTCTGGCAAGTGCCTTGTT
GAGCTGAGTTGGCAACAGCGCGTCGCAAGTGATTTGCTGACCCTTGTACA
AACGATTCACTGCTGAGTAACGGCGTTTCGACAACTCTTGCTCTGAGAAG
GAATTTTGAAGTTCTTTTTTGATCATCTGTAGCTTGATTTGCGTAAAATT
GTTTCAGTGCATCTTTTTCTTTAGAGCGTCCCCAATTAATTGCTTCACTG
GACGATAAGTTATCAGACGGGCGATTTATAATTTTATGAACGATATGTGT
TGTTTTGGGTTTTACTGTGGGTTGTGACTTTACAATGGTGTTAACCCTGG
ACGTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001013XLOC_001013Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001964-exon-sc0000012-1575043694:972043..975659TCONS_00001964-exon-sc0000012-1575043694:972043..975659Clytia hemisphaericaexon
TCONS_00001964-exon-sc0000012-1510915933:972043..975659TCONS_00001964-exon-sc0000012-1510915933:972043..975659Clytia hemisphaericaexon
TCONS_00001964-exon-sc0000012-1491911889:972043..975659TCONS_00001964-exon-sc0000012-1491911889:972043..975659Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001964-proteinTCONS_00001964-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:972043..975659 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0624608 0.0694707 0.0806621 0.0789153 0.912681 0.53142 0.183182 0.257239 0.0900494 0.111541 0.116015 0.228792 0.138469 0.0492044 0.0591122 0.114186 0.02674 0.0548152 0.0663972 0.2316 0.172198 0.302372 0.0408414 0.0371308 0.382439 0.477844 0.157018 0.0609359 0.0462178 0.117721
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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