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TCONS_00001952 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001952
Unique NameTCONS_00001952
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001952 ID=TCONS_00001952|Name=TCONS_00001952|organism=Clytia hemisphaerica|type=transcript|length=545bp
gtttttagataatATATACTCTCTCTATCATACATATTCACAAAAAAAAT
GATATTCGGAAAACCCGATTGATGGGGTCAAGCCAGCTTAACTAGGattt
atgtttttaataatCTTCTATAAAAGTTTGTCATTTTATATACATTGATG
TCATTGTAGTTTTCTTTTGTGACTGCAAAACAAAATAACTGGTCTCAAAC
CAGCGCATCATCagcaaattgaaaattaaaatctttgtaTTATTTTTCTG
GTGGTGATAGCGATCACTCCAAGTAGGTGGCATGTAAAAACCAACCAAGT
AAACACATATAGACATTCGAAGTCATTTTTCAAGGAGCATCACTTAAGTA
TCTCCTCTATtgtttgatagaaattttaatAAAGTACTTAAAATTCCATC
TTATCACTCATCGGTCGAGAGGCGAGCGAGAGAGTCGGTTCCAGTTCTCC
GGAAACTAGATGACGGCgcatcatttcaaaaaatcttgttgcttttgaaa
attgttaacACTTTTCCGCCTCCTTTAAGCTCTTGAATTCCTCCG
Run BLAST on NCBI

transcript from alignment at sc0000012:760465..761009-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001952 ID=TCONS_00001952|Name=TCONS_00001952|organism=Clytia hemisphaerica|type=transcript|length=545bp|location=Sequence derived from alignment at sc0000012:760465..761009- (Clytia hemisphaerica)
GTTTTTAGATAATATATACTCTCTCTATCATACATATTCACAAAAAAAAT GATATTCGGAAAACCCGATTGATGGGGTCAAGCCAGCTTAACTAGGATTT ATGTTTTTAATAATCTTCTATAAAAGTTTGTCATTTTATATACATTGATG TCATTGTAGTTTTCTTTTGTGACTGCAAAACAAAATAACTGGTCTCAAAC CAGCGCATCATCAGCAAATTGAAAATTAAAATCTTTGTATTATTTTTCTG GTGGTGATAGCGATCACTCCAAGTAGGTGGCATGTAAAAACCAACCAAGT AAACACATATAGACATTCGAAGTCATTTTTCAAGGAGCATCACTTAAGTA TCTCCTCTATTGTTTGATAGAAATTTTAATAAAGTACTTAAAATTCCATC TTATCACTCATCGGTCGAGAGGCGAGCGAGAGAGTCGGTTCCAGTTCTCC GGAAACTAGATGACGGCGCATCATTTCAAAAAATCTTGTTGCTTTTGAAA ATTGTTAACACTTTTCCGCCTCCTTTAAGCTCTTGAATTCCTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001008XLOC_001008Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001952-exon-sc0000012-1575043694:760465..761009TCONS_00001952-exon-sc0000012-1575043694:760465..761009Clytia hemisphaericaexon
TCONS_00001952-exon-sc0000012-1510915933:760465..761009TCONS_00001952-exon-sc0000012-1510915933:760465..761009Clytia hemisphaericaexon
TCONS_00001952-exon-sc0000012-1491911889:760465..761009TCONS_00001952-exon-sc0000012-1491911889:760465..761009Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:760465..761009 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.184753 0.725608 0.3351 0.772599 0.331436 0.487632 0.226598 2.14001 0.300938 0 0.53558 0.644533 5.45264 4.80004 4.79454 7.72851 8.12244 15.3197 28.2532 17.3353 3.29378 8.43126 4.35547 6.61609 3.20644 4.95294 43.4328 43.2191 3.55565 1.86618
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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