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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001946 ID=TCONS_00001946|Name=TCONS_00001946|organism=Clytia hemisphaerica|type=transcript|length=3224bpRun BLAST on NCBI transcript from alignment at sc0000012:600217..614342- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001946 ID=TCONS_00001946|Name=TCONS_00001946|organism=Clytia hemisphaerica|type=transcript|length=14126bp|location=Sequence derived from alignment at sc0000012:600217..614342- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00001946 vs. Swiss-Prot (Human)
Match: MPDZ (Multiple PDZ domain protein OS=Homo sapiens GN=MPDZ PE=1 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 2.751e-22 Identity = 95/293 (32.42%), Postives = 142/293 (48.46%), Query Frame = 1
Query: 262 GIFISHLLEDSVAEHDGRLQIGDEILFINGQSL-LTLGHKEAVQLLHSASNPVQLVISR----KLVSEKRQSSRKPSKSDVSPELFENNNNIFIGDVESPRLYTPTSEHHTKEIILINGRDGKKLGFSMAGGAEYGSPLVVKNILAGGIASLDGRLRIGDHLLKVNDIPLDNFKYNEAVSLFKS--------LKQGQIKLLVKTIXXXXXXXXXXXXXXXXLIDGA--------NIDV-VIKKVPGKGLG----VGFGQSSRSGIFIKYLAKGSLAARKSLLQLKDQVVALNG 1062
GIF+ + E SVA DGRL+ D+IL INGQ+L T+ H++A+ +L A + VQLVI+R +LVS SR PS + + ++N P H + I L+N DG LGF + GG G ++VK IL GG+A GRL GDH+LK+ D L + + + + +G I+ + +SS STP +D + DV + K V G G+ +G + SGIF+K + K S +Q+ DQ++A++G
Sbjct: 164 GIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSLPQLVSPI--VSRSPSAAST---ISAHSN--------------PVHWQHMETIELVN--DGSGLGFGIIGGKATG--VIVKTILPGGVADQHGRLCSGDHILKIGDTDLAGMSSEQVAQVLRQCGNRVKLMIARGAIEERTAPTALGITLSSSPTSTPELRVDASTQKGEESETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDG 433 HSP 2 Score: 88.1965 bits (217), Expect = 1.825e-17 Identity = 69/196 (35.20%), Postives = 104/196 (53.06%), Query Frame = 1
Query: 265 IFISHLLEDSVAEHDGRLQIGDEILFINGQSLLTLGHKEAVQLLHSASNPVQL-VISRKLVSEKRQSSRKPSKSDVSPELFE--NNNNIFIGDVESPRLYTPTSEHHTKEIILINGRDGKKLGFSMAGGAEYGSP-----LVVKNILAGGIASLDGRLRIGDHLLKVNDIPLDNFKYNEAVSLFKSLKQGQIKLLV 828
IFI+ + VA +L++GD I+ I G S + H +AV LL +AS +++ V++ VS ++P+ S +S F +++IF D+ P+ K I L G DG LGFS+ GG YGSP + VK + A G AS DGRL+ GD ++ VN L+ + EAV++ K K G + L+V
Sbjct: 1890 IFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSVVTGHQQEPASSSLS---FTGLTSSSIFQDDLGPPQ---------CKSITLERGPDG--LGFSIVGG--YGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK-GTVTLMV 2068 HSP 3 Score: 85.8853 bits (211), Expect = 9.507e-17 Identity = 87/320 (27.19%), Postives = 149/320 (46.56%), Query Frame = 1
Query: 262 GIFISHLLEDSVAEHDGRLQIGDEILFINGQSLLTLGHKEAVQLLHSASNPVQLVI------SRKLVS-------EKRQSSRK---PSKSDVSPELFENNNN-----IFIGDVESPRLYTPTSEHHTKEIILINGRDGKKLGFSMAGGAE--YGSPLVVKNILAGGIASLDGRLRIGDHLLKVNDIPLDNFKYNEAVSLFKSLKQGQIKLLVKTIXXXXXXXXXXXXXXXXLIDGANIDVVIKKVPGKGLGVGF-GQSSRSGIFIKYLAKGSLAARKSLLQLKDQVVALNGIGTRDTSLDDFHKIIHNIQPGDVRLSVIR 1149
G+ I L E VA DGRL++GD+IL ++ + ++ ++ + LL +A V+L I S+ + S EK+ SS+ P PE N + IF D + P I + GR G LG S+ GG++ G+ +++ + G A DGRL GD +L+VN I L ++EA+++ + Q +++L + ++ D I+ ++K PGKGLG+ G+ + +G+F+ + KG +A L DQ++ +NG R+ + + ++ G V L V R
Sbjct: 1505 GVIIKSLTEHGVAATDGRLKVGDQILAVDDEIVVGYPIEKFISLLKTAKMTVKLTIHAENPDSQAVPSAAGAASGEKKNSSQSLMVPQSGSPEPESIRNTSRSSTPAIFASDPAT----CPIIPGCETTIEISKGRTG--LGLSIVGGSDTLLGA-IIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQ-RVRLTL--------YRDEAPYKEEEVCDTLTIE--LQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALL-KCSLGTVTLEVGR 1805 The following BLAST results are available for this feature:
BLAST of TCONS_00001946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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