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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001933 ID=TCONS_00001933|Name=TCONS_00001933|organism=Clytia hemisphaerica|type=transcript|length=1754bp
ACATGCCCTGCCCATGAGAGCTGCCTTTTCGTGATGTAACTATCAATAGA
CAACAAGCCAATACGATTCAACAACTCCTCATTTGAGATTCTATATCGCC
TGACATGTAACACATTAACACTACACATTGCTCTGACACAATTACGATGG
AACATACGTAAAAGATTGAATAACTTCTCTGTAAGACTCCATGATTCTGA
TCCGTAAAGAGCAATCGGAAGCACTAAGCTTTCGTAAACAGATGCCTTGA
CTTTATTGGAGACATTTGCATTGGAGAAAATCGATTTTCTTAGAGCATCA
AAAGCATTGCTAGCTCTTTTGATACGGTTAGTAATATCAAGATTGTCTGT
ACAATCGCGTGACATGATTCTACCAAGATAGCAAAAACGGTCGGTTACGG
GTATAAATTTCCCATCTCCCAAGTCGATTGATGTTAGATTCGTATTGTCA
AACGTATTAGAATCGTGATACGATTTGACTGGAGCAGAAACAAACAGTAT
TTCAGTTTTTGATGGTTTATTGGGTAAAGATATATCACCAACATGAACTT
CCATCCCGAAGCGATTGAAATGGTCAAGCAGTAGAGGAATGAAGATGACG
AGATCGATGCGGGATTCGAACAACACGGCTGTATCATCTGCGTACTCTGA
GTCAGGGAAGTCGAAATCGATTCCGGAGGCAGTAACTCGTCTCCCTGTCA
TACAGAAATCCTTCTTGGTTCTGAACATACAAAGAGGTCGATCGTGCAGT
TTACGCCAAGTGATCATTATAGCCGCTATGTAAACAACGAAGAGTACAGG
CCCAAGAATGTCCCCTTGTTTAACTCCGATGGTACAGTTGATTGAATGCT
TgcaattttctatttcaaaatcTACTTTGAAATTATCATGAAGTGATTTT
ATCAGTCGAATTAACTTGATGGGTGCGCCAAATTTTTCTAACACTTCCCA
CAACATATCTCTAGGGACTCGGTCAAAGGCCTTGACTAAGTCatagcgac
cgtagtacagtggtagagcatccggctacggttcgcaaggttgtgggttc
aacccccagccgggtcataccaaagattcccaaaatggtacttgatgcct
ctctgcttgatgctcagcaattaagagaaggatcaagggtaattggagaa
atccagggagaaagagtggcgccctcccctaccttcgggtagatagctat
cgaaagaggggccttcgggtcgcctccgactgcggtcgcagacttactta
cttaagtCAAGGAACAAAATCCATGTTTCTTTACTATGTTCTCTACGCTT
TTTCATAGCCATATTCACAGCAAAAATAGCGTCTAAACAACCCCTTCCTG
AGCGGAAGCCACATTGTGCTTCATGGTCTAGAGATTCGACAAGTGGCTGT
AAACGATCATGGATAAGTATGGCAAGGATTTTGTAAGCAACTTCCAAAAG
CATGATNACAACCCCTTCCTGAGCGGAAGCCACATTGTGCTTCATGGTCT
AGAGATTCGACAAGTGGCTGTAAACGATCATGGATAAGTATGGCAAGGAT
TTTGTAAGCAACTACCAAAAGCATGATGCCACGATAGTTGCCGGGTAGAC
TAAGGTCtcctttttttggcaaaactttcAGCAGACCGGTATCCCAGGAT
TCGGGTGGAGATTCATTGTCCCAAACCTCGAGAATGATGTCGCGAAGTAA
AACGAAACATTGCTGGTTGTGGATACAAGATTTCAGCATGAGTGGTGTGA
TTCC Run BLAST on NCBI transcript from alignment at sc0000012:338409..340288- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001933 ID=TCONS_00001933|Name=TCONS_00001933|organism=Clytia hemisphaerica|type=transcript|length=1880bp|location=Sequence derived from alignment at sc0000012:338409..340288- (Clytia hemisphaerica)
ACATGCCCTGCCCATGAGAGCTGCCTTTTCGTGATGTAACTATCAATAGA
CAACAAGCCAATACGATTCAACAACTCCTCATTTGAGATTCTATATCGCC
TGACATGTAACACATTAACACTACACATTGCTCTGACACAATTACGATGG
AACATACGTAAAAGATTGAATAACTTCTCTGTAAGACTCCATGATTCTGA
TCCGTAAAGAGCAATCGGAAGCACTAAGCTTTCGTAAACAGATGCCTTGA
CTTTATTGGAGACATTTGCATTGGAGAAAATCGATTTTCTTAGAGCATCA
AAAGCATTGCTAGCTCTTTTGATACGGTTAGTAATATCAAGATTGTCTGT
ACAATCGCGTGACATGATTCTACCAAGATAGCAAAAACGGTCGGTTACGG
GTATAAATTTCCCATCTCCCAAGTCGATTGATGTTAGATTCGTATTGTCA
AACGTATTAGAATCGTGATACGATTTGACTGGAGCAGAAACAAACAGTAT
TTCAGTTTTTGATGGTTTATTGGGTAAAGATATATCACCAACATGAACTT
CCATCCCGAAGCGATTGAAATGGTCAAGCAGTAGAGGAATGAAGATGACG
AGATCGATGCGGGATTCGAACAACACGGCTGTATCATCTGCGTACTCTGA
GTCAGGGAAGTCGAAATCGATTCCGGAGGCAGTAACTCGTCTNAAATGGT
CAAGCAGCAGAGGAATGAAGATGACAAGATCGATGCGGGATTCGAACAAC
ACGGCTATATCATCTGCGTACTCTAAGTCAGGGGAGTCGAAATCGATTCA
GGAGGCAGTAACTCGTCTCCCTGTCATACAGAAATCCTTCTTGGTTCTGA
ACATACAAAGAGGTCGATCGTGCAGTTTACGCCAAGTGATCATTATAGCC
GCTATGTAAACAACGAAGAGTACAGGCCCAAGAATGTCCCCTTGTTTAAC
TCCGATGGTACAGTTGATTGAATGCTTGCAATTTTCTATTTCAAAATCTA
CTTTGAAATTATCATGAAGTGATTTTATCAGTCGAATTAACTTGATGGGT
GCGCCAAATTTTTCTAACACTTCCCACAACATATCTCTAGGGACTCGGTC
AAAGGCCTTGACTAAGTCATAGCGACCGTAGTACAGTGGTAGAGCATCCG
GCTACGGTTCGCAAGGTTGTGGGTTCAACCCCCAGCCGGGTCATACCAAA
GATTCCCAAAATGGTACTTGATGCCTCTCTGCTTGATGCTCAGCAATTAA
GAGAAGGATCAAGGGTAATTGGAGAAATCCAGGGAGAAAGAGTGGCGCCC
TCCCCTACCTTCGGGTAGATAGCTATCGAAAGAGGGGCCTTCGGGTCGCC
TCCGACTGCGGTCGCAGACTTACTTACTTAAGTCAAGGAACAAAATCCAT
GTTTCTTTACTATGTTCTCTACGCTTTTTCATAGCCATATTCACAGCAAA
AATAGCGTCTAAACAACCCCTTCCTGAGCGGAAGCCACATTGTGCTTCAT
GGTCTAGAGATTCGACAAGTGGCTGTAAACGATCATGGATAAGTATGGCA
AGGATTTTGTAAGCAACTTCCAAAAGCATGATNACAACCCCTTCCTGAGC
GGAAGCCACATTGTGCTTCATGGTCTAGAGATTCGACAAGTGGCTGTAAA
CGATCATGGATAAGTATGGCAAGGATTTTGTAAGCAACTACCAAAAGCAT
GATGCCACGATAGTTGCCGGGTAGACTAAGGTCTCCTTTTTTTGGCAAAA
CTTTCAGCAGACCGGTATCCCAGGATTCGGGTGGAGATTCATTGTCCCAA
ACCTCGAGAATGATGTCGCGAAGTAAAACGAAACATTGCTGGTTGTGGAT
ACAAGATTTCAGCATGAGTGGTGTGATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001933-exon-sc0000012-1575043694:339611..340288 | TCONS_00001933-exon-sc0000012-1575043694:339611..340288 | Clytia hemisphaerica | exon |
| TCONS_00001933-exon-sc0000012-1575043694:338409..339484 | TCONS_00001933-exon-sc0000012-1575043694:338409..339484 | Clytia hemisphaerica | exon |
| TCONS_00001933-exon-sc0000012-1510915933:339611..340288 | TCONS_00001933-exon-sc0000012-1510915933:339611..340288 | Clytia hemisphaerica | exon |
| TCONS_00001933-exon-sc0000012-1510915933:338409..339484 | TCONS_00001933-exon-sc0000012-1510915933:338409..339484 | Clytia hemisphaerica | exon |
| TCONS_00001933-exon-sc0000012-1491911889:339611..340288 | TCONS_00001933-exon-sc0000012-1491911889:339611..340288 | Clytia hemisphaerica | exon |
| TCONS_00001933-exon-sc0000012-1491911889:338409..339484 | TCONS_00001933-exon-sc0000012-1491911889:338409..339484 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:338409..340288 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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