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TCONS_00001933 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001933
Unique NameTCONS_00001933
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1754

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001933 ID=TCONS_00001933|Name=TCONS_00001933|organism=Clytia hemisphaerica|type=transcript|length=1754bp
ACATGCCCTGCCCATGAGAGCTGCCTTTTCGTGATGTAACTATCAATAGA
CAACAAGCCAATACGATTCAACAACTCCTCATTTGAGATTCTATATCGCC
TGACATGTAACACATTAACACTACACATTGCTCTGACACAATTACGATGG
AACATACGTAAAAGATTGAATAACTTCTCTGTAAGACTCCATGATTCTGA
TCCGTAAAGAGCAATCGGAAGCACTAAGCTTTCGTAAACAGATGCCTTGA
CTTTATTGGAGACATTTGCATTGGAGAAAATCGATTTTCTTAGAGCATCA
AAAGCATTGCTAGCTCTTTTGATACGGTTAGTAATATCAAGATTGTCTGT
ACAATCGCGTGACATGATTCTACCAAGATAGCAAAAACGGTCGGTTACGG
GTATAAATTTCCCATCTCCCAAGTCGATTGATGTTAGATTCGTATTGTCA
AACGTATTAGAATCGTGATACGATTTGACTGGAGCAGAAACAAACAGTAT
TTCAGTTTTTGATGGTTTATTGGGTAAAGATATATCACCAACATGAACTT
CCATCCCGAAGCGATTGAAATGGTCAAGCAGTAGAGGAATGAAGATGACG
AGATCGATGCGGGATTCGAACAACACGGCTGTATCATCTGCGTACTCTGA
GTCAGGGAAGTCGAAATCGATTCCGGAGGCAGTAACTCGTCTCCCTGTCA
TACAGAAATCCTTCTTGGTTCTGAACATACAAAGAGGTCGATCGTGCAGT
TTACGCCAAGTGATCATTATAGCCGCTATGTAAACAACGAAGAGTACAGG
CCCAAGAATGTCCCCTTGTTTAACTCCGATGGTACAGTTGATTGAATGCT
TgcaattttctatttcaaaatcTACTTTGAAATTATCATGAAGTGATTTT
ATCAGTCGAATTAACTTGATGGGTGCGCCAAATTTTTCTAACACTTCCCA
CAACATATCTCTAGGGACTCGGTCAAAGGCCTTGACTAAGTCatagcgac
cgtagtacagtggtagagcatccggctacggttcgcaaggttgtgggttc
aacccccagccgggtcataccaaagattcccaaaatggtacttgatgcct
ctctgcttgatgctcagcaattaagagaaggatcaagggtaattggagaa
atccagggagaaagagtggcgccctcccctaccttcgggtagatagctat
cgaaagaggggccttcgggtcgcctccgactgcggtcgcagacttactta
cttaagtCAAGGAACAAAATCCATGTTTCTTTACTATGTTCTCTACGCTT
TTTCATAGCCATATTCACAGCAAAAATAGCGTCTAAACAACCCCTTCCTG
AGCGGAAGCCACATTGTGCTTCATGGTCTAGAGATTCGACAAGTGGCTGT
AAACGATCATGGATAAGTATGGCAAGGATTTTGTAAGCAACTTCCAAAAG
CATGATNACAACCCCTTCCTGAGCGGAAGCCACATTGTGCTTCATGGTCT
AGAGATTCGACAAGTGGCTGTAAACGATCATGGATAAGTATGGCAAGGAT
TTTGTAAGCAACTACCAAAAGCATGATGCCACGATAGTTGCCGGGTAGAC
TAAGGTCtcctttttttggcaaaactttcAGCAGACCGGTATCCCAGGAT
TCGGGTGGAGATTCATTGTCCCAAACCTCGAGAATGATGTCGCGAAGTAA
AACGAAACATTGCTGGTTGTGGATACAAGATTTCAGCATGAGTGGTGTGA
TTCC
Run BLAST on NCBI

transcript from alignment at sc0000012:338409..340288-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001933 ID=TCONS_00001933|Name=TCONS_00001933|organism=Clytia hemisphaerica|type=transcript|length=1880bp|location=Sequence derived from alignment at sc0000012:338409..340288- (Clytia hemisphaerica)
ACATGCCCTGCCCATGAGAGCTGCCTTTTCGTGATGTAACTATCAATAGA CAACAAGCCAATACGATTCAACAACTCCTCATTTGAGATTCTATATCGCC TGACATGTAACACATTAACACTACACATTGCTCTGACACAATTACGATGG AACATACGTAAAAGATTGAATAACTTCTCTGTAAGACTCCATGATTCTGA TCCGTAAAGAGCAATCGGAAGCACTAAGCTTTCGTAAACAGATGCCTTGA CTTTATTGGAGACATTTGCATTGGAGAAAATCGATTTTCTTAGAGCATCA AAAGCATTGCTAGCTCTTTTGATACGGTTAGTAATATCAAGATTGTCTGT ACAATCGCGTGACATGATTCTACCAAGATAGCAAAAACGGTCGGTTACGG GTATAAATTTCCCATCTCCCAAGTCGATTGATGTTAGATTCGTATTGTCA AACGTATTAGAATCGTGATACGATTTGACTGGAGCAGAAACAAACAGTAT TTCAGTTTTTGATGGTTTATTGGGTAAAGATATATCACCAACATGAACTT CCATCCCGAAGCGATTGAAATGGTCAAGCAGTAGAGGAATGAAGATGACG AGATCGATGCGGGATTCGAACAACACGGCTGTATCATCTGCGTACTCTGA GTCAGGGAAGTCGAAATCGATTCCGGAGGCAGTAACTCGTCTNAAATGGT CAAGCAGCAGAGGAATGAAGATGACAAGATCGATGCGGGATTCGAACAAC ACGGCTATATCATCTGCGTACTCTAAGTCAGGGGAGTCGAAATCGATTCA GGAGGCAGTAACTCGTCTCCCTGTCATACAGAAATCCTTCTTGGTTCTGA ACATACAAAGAGGTCGATCGTGCAGTTTACGCCAAGTGATCATTATAGCC GCTATGTAAACAACGAAGAGTACAGGCCCAAGAATGTCCCCTTGTTTAAC TCCGATGGTACAGTTGATTGAATGCTTGCAATTTTCTATTTCAAAATCTA CTTTGAAATTATCATGAAGTGATTTTATCAGTCGAATTAACTTGATGGGT GCGCCAAATTTTTCTAACACTTCCCACAACATATCTCTAGGGACTCGGTC AAAGGCCTTGACTAAGTCATAGCGACCGTAGTACAGTGGTAGAGCATCCG GCTACGGTTCGCAAGGTTGTGGGTTCAACCCCCAGCCGGGTCATACCAAA GATTCCCAAAATGGTACTTGATGCCTCTCTGCTTGATGCTCAGCAATTAA GAGAAGGATCAAGGGTAATTGGAGAAATCCAGGGAGAAAGAGTGGCGCCC TCCCCTACCTTCGGGTAGATAGCTATCGAAAGAGGGGCCTTCGGGTCGCC TCCGACTGCGGTCGCAGACTTACTTACTTAAGTCAAGGAACAAAATCCAT GTTTCTTTACTATGTTCTCTACGCTTTTTCATAGCCATATTCACAGCAAA AATAGCGTCTAAACAACCCCTTCCTGAGCGGAAGCCACATTGTGCTTCAT GGTCTAGAGATTCGACAAGTGGCTGTAAACGATCATGGATAAGTATGGCA AGGATTTTGTAAGCAACTTCCAAAAGCATGATNACAACCCCTTCCTGAGC GGAAGCCACATTGTGCTTCATGGTCTAGAGATTCGACAAGTGGCTGTAAA CGATCATGGATAAGTATGGCAAGGATTTTGTAAGCAACTACCAAAAGCAT GATGCCACGATAGTTGCCGGGTAGACTAAGGTCTCCTTTTTTTGGCAAAA CTTTCAGCAGACCGGTATCCCAGGATTCGGGTGGAGATTCATTGTCCCAA ACCTCGAGAATGATGTCGCGAAGTAAAACGAAACATTGCTGGTTGTGGAT ACAAGATTTCAGCATGAGTGGTGTGATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000999XLOC_000999Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001933-exon-sc0000012-1575043694:339611..340288TCONS_00001933-exon-sc0000012-1575043694:339611..340288Clytia hemisphaericaexon
TCONS_00001933-exon-sc0000012-1575043694:338409..339484TCONS_00001933-exon-sc0000012-1575043694:338409..339484Clytia hemisphaericaexon
TCONS_00001933-exon-sc0000012-1510915933:339611..340288TCONS_00001933-exon-sc0000012-1510915933:339611..340288Clytia hemisphaericaexon
TCONS_00001933-exon-sc0000012-1510915933:338409..339484TCONS_00001933-exon-sc0000012-1510915933:338409..339484Clytia hemisphaericaexon
TCONS_00001933-exon-sc0000012-1491911889:339611..340288TCONS_00001933-exon-sc0000012-1491911889:339611..340288Clytia hemisphaericaexon
TCONS_00001933-exon-sc0000012-1491911889:338409..339484TCONS_00001933-exon-sc0000012-1491911889:338409..339484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:338409..340288 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.98767 1.61643 4.93198 4.82182 9.56522 6.31434 4.55119 4.84217 3.6073 4.67438 3.02415 3.12198 4.80416 5.10954 2.9897 2.61699 4.14299 3.94741 5.76835 7.30479 2.99527 3.37426 1.66005 2.16289 9.17211 9.20527 3.84543 2.64182 0.499213 0.711627
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001933 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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