TCONS_00001931 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001931
Unique NameTCONS_00001931
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001931 ID=TCONS_00001931|Name=TCONS_00001931|organism=Clytia hemisphaerica|type=transcript|length=589bp
ACAAAAAACCAAATACTTGCATATCAACTCAACAAACAACCAAAGCTTCA
AAACCATTGATGGATCAGAACTTGAAAAGGTCCAAGACTTCAAATACCTC
GGCTCGTACTCCGAAACAGGCTTGATACATGCTGGAAGTCGAAAATCTCT
GCTAAAACGAAACTAAAGATCTTTGATGCGACAATCATGTCGATCATTTT
ATATGCATGTGAATCCTGGTCCCTCAATAAATCTCTCGAGAGAAAAATTG
ACCGGACCTACACAAGGATGCTGAGAAGGGTGAAAAACATCAATCCCCAA
TCACATACCACCAACAGAGTTTTTTACGGAGGGCGACCTCCAATCAGCAA
AGTCATTCAAATCCACCGTCTCCGCCTAGCTGGCCATATCATACGTGGTA
ACGAACCTGCAACAAAACTTTTGTTCTGGGAACCTGAAAAGTCTAGACGA
AGAGGTCGACCAACCAAAACGATTAAATCACTGATACATGAAGACACTGG
GTTGGAAGAGAGGGAACTTATACGGCTGATGCACGACAGAGATAGATGGA
GGGAACACATCATGTCACCCCAAGTGGATGCCTaaagta
Run BLAST on NCBI

protein sequence of TCONS_00001931-protein

>TCONS_00001931-protein ID=TCONS_00001931-protein|Name=TCONS_00001931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MSIILYACESWSLNKSLERKIDRTYTRMLRRVKNINPQSHTTNRVFYGGR
PPISKVIQIHRLRLAGHIIRGNEPATKLLFWEPEKSRRRGRPTKTIKSLI
HEDTGLEERELIRLMHDRDRWREHIMSPQVDA
Run BLAST on NCBI

transcript from alignment at sc0000012:320504..321141-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001931 ID=TCONS_00001931|Name=TCONS_00001931|organism=Clytia hemisphaerica|type=transcript|length=638bp|location=Sequence derived from alignment at sc0000012:320504..321141- (Clytia hemisphaerica)
ACAAAAAACCAAATACTTGCATATCAACTCAACAAACAACCAAAGCTTCA
AAACCATTGATGGATCAGAACTTGAAAAGGTCCAAGACTTCAAATACCTC
GGCTCGTACTCCGAAACATCTACTGAAGTCAATACGAGAATGGCACAAGC
TTGGTCTGCTCTCAACAGGCTTGATACATGCTGGAAGTCGAAAATCTCTG
CTAAAACGAAACTAAAGATCTTTGATGCGACAATCATGTCGATCATTTTA
TATGCATGTGAATCCTGGTCCCTCAATAAATCTCTCGAGAGAAAAATTGA
CCGGACCTACACAAGGATGCTGAGAAGGGTGAAAAACATCAATCCCCAAT
CACATACCACCAACAGAGTTTTTTACGGAGGGCGACCTCCAATCAGCAAA
GTCATTCAAATCCACCGTCTCCGCCTAGCTGGCCATATCATACGTGGTAA
CGAACCTGCAACAAAACTTTTGTTCTGGGAACCTGAAAAGTCTAGACGAA
GAGGTCGACCAACCAAAACGATTAAATCACTGATACATGAAGACACTGGG
TTGGAAGAGAGGGAACTTATACGGCTGATGCACGACAGAGATAGATGGAG
GGAACACATCATGTCACCCCAAGTGGATGCCTAAAGTA

Coding sequence (CDS) from alignment at sc0000012:320504..321141-

>TCONS_00001931 ID=TCONS_00001931|Name=TCONS_00001931|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0000012:320504..321141- (Clytia hemisphaerica)
ATGTCGATCATTTTATATGCATGTGAATCCTGGTCCCTCAATAAATCTCT
CGAGAGAAAAATTGACCGGACCTACACAAGGATGCTGAGAAGGGTGAAAA
ACATCAATCCCCAATCACATACCACCAACAGAGTTTTTTACGGAGGGCGA
CCTCCAATCAGCAAAGTCATTCAAATCCACCGTCTCCGCCTAGCTGGCCA
TATCATACGTGGTAACGAACCTGCAACAAAACTTTTGTTCTGGGAACCTG
AAAAGTCTAGACGAAGAGGTCGACCAACCAAAACGATTAAATCACTGATA
CATGAAGACACTGGGTTGGAAGAGAGGGAACTTATACGGCTGATGCACGA
CAGAGATAGATGGAGGGAACACATCATGTCACCCCAAGTGGATGCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000997XLOC_000997Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001931-proteinTCONS_00001931-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001931-exon-sc0000012-1575043694:321025..321141TCONS_00001931-exon-sc0000012-1575043694:321025..321141Clytia hemisphaericaexon
TCONS_00001931-exon-sc0000012-1575043694:320504..320975TCONS_00001931-exon-sc0000012-1575043694:320504..320975Clytia hemisphaericaexon
TCONS_00001931-exon-sc0000012-1510915933:321025..321141TCONS_00001931-exon-sc0000012-1510915933:321025..321141Clytia hemisphaericaexon
TCONS_00001931-exon-sc0000012-1510915933:320504..320975TCONS_00001931-exon-sc0000012-1510915933:320504..320975Clytia hemisphaericaexon
TCONS_00001931-exon-sc0000012-1491911889:321025..321141TCONS_00001931-exon-sc0000012-1491911889:321025..321141Clytia hemisphaericaexon
TCONS_00001931-exon-sc0000012-1491911889:320504..320975TCONS_00001931-exon-sc0000012-1491911889:320504..320975Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:320504..321141 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.617577	1.07016	1.15318	1.13223	1.34218	1.15462	0.360097	1.88856	0.944097	1.07197	1.69533	1.08905	3.97918	3.08475	2.95971	1.69077	3.94775	2.79506	2.93173	2.80406	1.48472	1.5869	0.476878	1.22159	2.50087	2.61284	0.896129	0.956374	2.00085	1.67144
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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