TCONS_00001929 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001929
Unique NameTCONS_00001929
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001929 ID=TCONS_00001929|Name=TCONS_00001929|organism=Clytia hemisphaerica|type=transcript|length=1302bp
attgtTTCCGTTCGCTCTACTTTATTCCCAAGGGAGGAAACATTGAGAGA
CAATTCGTTTAATCCCTTTGAGACCAACTAAAATTAAGAAGCTCCAGGTt
gaaaaagagataaaaagCTCAGTTGAAATCAAGATAGTACGAACAATTGA
CGATTAAGCAGCACTGAGTCACAAACGTAGAGCAATTGGACCACAATGAG
CACGTGTGCAGACGAACAACAGCCCTCGACATCAACAAATGATCAACCAT
CTCCTTCAGCAATCTCATTCAAATCATGGGAAAAGGCTCAAACACTACCA
CGTATTATGGAAGAATTCGAACGGTGTAAAAGCTGGTATGAACGTATCAA
AAGTCAACATTCTAAAATTGGGAAAATATGTTACTTGtttgaaatgattt
tcttaCAATTGTTTACATCCTTGATGGCTGCATGCTCGACTGAAGTTGTA
TCGCCCTGGGCTTCGTGGACTATgagtaaagcCATGATTGTTGACGATTT
TCTTTGCCATCAGCTGCAATTTGTTGAAGAAAAACTGACAGATGTTGATA
CTGAATGGCTGTACCAATCAAATGGCTACATTGATCGTACGTATCTGTCC
ACATGTTTGTTTCTCCgcattttctttctctttccCCGCATATGGTACCG
CTTCCTAACCGTTTGCATCACAGCAACGAAAAATGAAATCTCAGAGGATT
GGGAACTATTAGTGAATATCGCTAACCCACCTAAACCACGCCGATCCCGA
CGCATCAGATCACGTAAATCTAAAGACACTTCACCTGGTAAGAAAAGAAA
ACACGAAGAAGTTGAACGTCATTTACCGGGATATTTCTACGTACATGAAT
GCTCACAAGAAAGTGATCCTGATTTTCAACCAAATTCAGCAGATGATGAT
ACTGAGGTGACATCAGCAAGCGAGAACAGCCACAGTGAAAGCGACGAAAG
TGGAGAAGAGCTAGAAATCTTGCACACTGAACAAGATGAAGACCTTTGTA
TCGTTGAAAGTCCTGATGAGGTTATTGTTACAAATGAAGTTGTAAAGAAA
GAACCGACCGTCGATGCTGATACTACACCCGAGGTTCTCGCAGCTTAGGA
CAAAATTCCTGTTCTACCCCTCTTTgtttatgttatttttttccaaatat
ttattTTGCTTGTGCCTgtatattttaagaaattttctaaaattgtaaaa
atttatttaatttaaataGCAAGAATGAATTTCCTTACAAAATAAAGATT
TCAACTCTTTCCAGACTGTCAATTCCAGGGTAATATAACAACATACTAGG
NT
Run BLAST on NCBI

protein sequence of TCONS_00001929-protein

>TCONS_00001929-protein ID=TCONS_00001929-protein|Name=TCONS_00001929-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MSTCADEQQPSTSTNDQPSPSAISFKSWEKAQTLPRIMEEFERCKSWYER
IKSQHSKIGKICYLFEMIFLQLFTSLMAACSTEVVSPWASWTMSKAMIVD
DFLCHQLQFVEEKLTDVDTEWLYQSNGYIDRTYLSTCLFLRIFFLFPRIW
YRFLTVCITATKNEISEDWELLVNIANPPKPRRSRRIRSRKSKDTSPGKK
RKHEEVERHLPGYFYVHECSQESDPDFQPNSADDDTEVTSASENSHSESD
ESGEELEILHTEQDEDLCIVESPDEVIVTNEVVKKEPTVDADTTPEVLAA
Run BLAST on NCBI

transcript from alignment at sc0000012:253110..256291-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001929 ID=TCONS_00001929|Name=TCONS_00001929|organism=Clytia hemisphaerica|type=transcript|length=3182bp|location=Sequence derived from alignment at sc0000012:253110..256291- (Clytia hemisphaerica)
ATTGTTTCCGTTCGCTCTACTTTATTCCCAAGGGAGGAAACATTGAGAGA
CAATTCGTTTAATCCCTTTGAGACCAACTAAAATTAAGAAGCTCCAGGTT
GAAAAAGAGATAAAAAGCTCAGTTGAAATCAAGATAGTACGAACAATTGA
CGATTAAGCAGCACTGAGTCACAAACGTAGAGGTATGTATCCAAATTTTA
GACGTTGTTTTCTCGACATCTTATTACCTATTTTGTAACACTAAAAAGAC
TTGGTACTGTGAGAAATTATAAATCTTACTTTTGGGCATGTAACTTAGAA
AAACCTTAGTGTAGCTTACACTAAATGAACATAGTTTAGTGGGAAGAGAC
TAAATTGAGAGACCTTCTAAAATAACAACATAAGCCGCTGTAGTGAAGTA
GATTTCGGTCTATCCAGCATACTAAATCATATTTGAGATTGAAAATTAAT
TTTCATTTTTGCCATTTAGCAATTGGACCACAATGAGCACGTGTGCAGAC
GAACAACAGCCCTCGACATCAACAAATGATCAACCATCTCCTTCAGCAAT
CTCATTCAAATCATGGGAAAAGGCTCAAACACTACCACGTATTATGGAAG
AATTCGAACGGTGTAAAAGCTGGTATGAACGTATCAAAAGTCAACATTCT
AAAATTGGGAAAATATGTTACTTGTTTGAAATGATTTTCTTACAATTGTT
TACATCCTTGATGGCTGCATGCTCGACTGAAGTTGTATCGCCCTGGGCTT
CGTGGACTATGAGTAAAGGTTGGTTTTTATAAATCCTAGATTCATAAGTT
CTCGTCTTTAAAGTTTGGAAATTTGGAAAAATAGTCTCTCCAAGGGTAGA
TTCGAACTCTGGGTCGGATATAGCCGTCACCTTGCAAACCTGATAACCCC
TCCTCCCCGAGTAGGGACCAGAAAAATACTGTGAAGCTTCGATCGTTTAA
AGATTATAACATAGTGTCCTCCAGGGTTTGTTCCCCCCACCAAATTCTTG
ATTTTTTTAAATCTCCCCCTCTTTTTTTTTCCCCTTTGACTTTTCAGTTT
TTTAGTTTCCCCCCTCTTTTTTGCTTTCCCTCAAAAAATTCTGAAAATAT
CAGTTCCCCCCATGTACCCATATAAGTTTCTCAAGTTTCAACCTGACATT
TTGCTGCAAAAGAGATACTAGACAAAATAGAGCGAAAATGGATTAATGTA
TACAAACACGCTTTGAAAAGCAGACTTAAAACAACAATGAAATGAAAAAT
TGACTGATCTTGGTTACTGAGATAAAGTTGAAGTGATTTCACACTTCCCC
CACACCAAATCTGCCAACGATCGATGTTTCCCACCTCTTTTTTCCTCTCT
TTTTTCCCCCTCTTTACTATTCAAATTTTCATTCCCCCCTCACCCATCCA
AAATTGGAATATTGGTCCCCCCCCCTTATAAAGTAGGGAGGAGGACAGAC
ACTATGTATAAGGCACTCTTACTCGAGTCAAAGAGGACTTTTAGTTTTCT
TAGTTTATCTCTTGAAATGTGAGGCTGCTGATTTTCTTAATTTGTTACTT
TGACTTGATTTTGGTTACGTTATAAGTTGAGTCTACATTTCTTGTAAAAT
TATCTTTGTAAAAGGCGTCCATCTTTGGCTTGGATTGCCAGTATTACCTA
AACACCTTAAATGGTATAACGCTACTTAATGCTTTATGTTTTCTATTTTA
GCCATGATTGTTGACGATTTTCTTTGCCATCAGCTGCAATTTGTTGAAGA
AAAACTGACAGATGTAAGTCCTGTAAAAAAAGGTCTTATTGGAATGGAAA
ATAATTTAGAATATATAGTGGCTGATTTATTTTGTTGGCTTGTCAAATTG
AGTGACACTCTCAAAACACGGTGCCCGGCTTTCCGACGGGAGAAATCCCA
GGCTATTATGTTTGGTTCTATGGCAGGATTTTAGTGTTGTTACAATAGAT
GCAAGATAGAAAATTTTGGTCTCTTTCTCTCAACCTCTGATTTTTATTAC
ATTGTTCAAATAGGTTGATACTGAATGGCTGTACCAATCAAATGGCTACA
TTGATCGTACGTATCTGTCCACATGTTTGTTTCTCCGCATTTTCTTTCTC
TTTCCCCGCATATGGTACCGCTTCCTAACCGTTTGCATCACAGCAACGAA
AAATGAAATCTCAGAGGATTGGGAACTATTAGTGAATATCGCTAACCCAC
CTAAACCACGCCGATCCCGACGCATCAGATCACGTAAATCTAAAGACACT
TCACCTGGTAAGAAAAGAAAACACGAAGAAGTTGAACGTCATTTACCGGG
ATATTTCTACGTACATGAATGCTCACAAGAAAGTGATCCTGATTTTCAAC
CAAATTCAGCAGATGATGATACTGAGGTATGATGTAGTAGGATTTTATTT
ATTTCCTACAAAACAGGGTTTTGATAATATTCGGGCAATTGAACAAATCA
AACTTCTCGTGTTTTATTGCCACCAAATGTTTATTTTCCCAAGAATTGAG
CAACGCCAATTTAAGCCAAAGTGACCCAGTAATCTTATTTTCTCCAAGCA
GACAGAGGATATAATACAAATACCAACGGTGGAGAAACAAAATCTTATGA
CATATTAAACTTAAAAATACTCGTGGTATTCTCAGTTGTGTTTTAGGAGT
TTACCCTTCCTATTGGTGGGTTAAGGTGCTTTTTTGTTAGGGAATATTAA
ATCGGAACTTATTTTAATAACAAATAATTGAAATAGAAACGAGGTTCGAA
AGTCATAATGACCCTTGTGTGATTCCCTTTCTTCAGGTGACATCAGCAAG
CGAGAACAGCCACAGTGAAAGCGACGAAAGTGGAGAAGAGCTAGAAATCT
TGCACACTGAACAAGATGAAGACCTTTGTATCGTTGAAAGTCCTGATGAG
GTTATTGTTACAAATGAAGTTGTAAAGAAAGAACCGACCGTCGATGCTGA
TACTACACCCGAGGTTCTCGCAGCTTAGGACAAAATTCCTGTTCTACCCC
TCTTTGTTTATGTTATTTTTTTCCAAATATTTATTTTGCTTGTGCCTGTA
TATTTTAAGAAATTTTCTAAAATTGTAAAAATTTATTTAATTTAAATAGC
AAGAATGAATTTCCTTACAAAATAAAGATTTCAACTCTTTCCAGACTGTC
AATTCCAGGGTAATATAACAACATACTAGGNT

Coding sequence (CDS) from alignment at sc0000012:253110..256291-

>TCONS_00001929 ID=TCONS_00001929|Name=TCONS_00001929|organism=Clytia hemisphaerica|type=CDS|length=3612bp|location=Sequence derived from alignment at sc0000012:253110..256291- (Clytia hemisphaerica)
GTGACATCAGCAAGCGAGAACAGCCACAGTGAAAGCGACGAAAGTGGAGA
AGAGCTAGAAATCTTGCACACTGAACAAGATGAAGACCTTTGTATCGTTG
AAAGTCCTGATGAGGTTATTGTTACAAATGAAGTTGTAAAGAAAGAACCG
ACCGTCGATGCTGATACTACACCCGAGGTTCTCGCAGCTTAGGTTGATAC
TGAATGGCTGTACCAATCAAATGGCTACATTGATCGTACGTATCTGTCCA
CATGTTTGTTTCTCCGCATTTTCTTTCTCTTTCCCCGCATATGGTACCGC
TTCCTAACCGTTTGCATCACAGCAACGAAAAATGAAATCTCAGAGGATTG
GGAACTATTAGTGAATATCGCTAACCCACCTAAACCACGCCGATCCCGAC
GCATCAGATCACGTAAATCTAAAGACACTTCACCTGGTAAGAAAAGAAAA
CACGAAGAAGTTGAACGTCATTTACCGGGATATTTCTACGTACATGAATG
CTCACAAGAAAGTGATCCTGATTTTCAACCAAATTCAGCAGATGATGATA
CTGAGCCATGATTGTTGACGATTTTCTTTGCCATCAGCTGCAATTTGTTG
AAGAAAAACTGACAGATATGAGCACGTGTGCAGACGAACAACAGCCCTCG
ACATCAACAAATGATCAACCATCTCCTTCAGCAATCTCATTCAAATCATG
GGAAAAGGCTCAAACACTACCACGTATTATGGAAGAATTCGAACGGTGTA
AAAGCTGGTATGAACGTATCAAAAGTCAACATTCTAAAATTGGGAAAATA
TGTTACTTGTTTGAAATGATTTTCTTACAATTGTTTACATCCTTGATGGC
TGCATGCTCGACTGAAGTTGTATCGCCCTGGGCTTCGTGGACTATGAGTA
AAGGTGACATCAGCAAGCGAGAACAGCCACAGTGAAAGCGACGAAAGTGG
AGAAGAGCTAGAAATCTTGCACACTGAACAAGATGAAGACCTTTGTATCG
TTGAAAGTCCTGATGAGGTTATTGTTACAAATGAAGTTGTAAAGAAAGAA
CCGACCGTCGATGCTGATACTACACCCGAGGTTCTCGCAGCTTAGGTTGA
TACTGAATGGCTGTACCAATCAAATGGCTACATTGATCGTACGTATCTGT
CCACATGTTTGTTTCTCCGCATTTTCTTTCTCTTTCCCCGCATATGGTAC
CGCTTCCTAACCGTTTGCATCACAGCAACGAAAAATGAAATCTCAGAGGA
TTGGGAACTATTAGTGAATATCGCTAACCCACCTAAACCACGCCGATCCC
GACGCATCAGATCACGTAAATCTAAAGACACTTCACCTGGTAAGAAAAGA
AAACACGAAGAAGTTGAACGTCATTTACCGGGATATTTCTACGTACATGA
ATGCTCACAAGAAAGTGATCCTGATTTTCAACCAAATTCAGCAGATGATG
ATACTGAGCCATGATTGTTGACGATTTTCTTTGCCATCAGCTGCAATTTG
TTGAAGAAAAACTGACAGATATGAGCACGTGTGCAGACGAACAACAGCCC
TCGACATCAACAAATGATCAACCATCTCCTTCAGCAATCTCATTCAAATC
ATGGGAAAAGGCTCAAACACTACCACGTATTATGGAAGAATTCGAACGGT
GTAAAAGCTGGTATGAACGTATCAAAAGTCAACATTCTAAAATTGGGAAA
ATATGTTACTTGTTTGAAATGATTTTCTTACAATTGTTTACATCCTTGAT
GGCTGCATGCTCGACTGAAGTTGTATCGCCCTGGGCTTCGTGGACTATGA
GTAAAGGTGACATCAGCAAGCGAGAACAGCCACAGTGAAAGCGACGAAAG
TGGAGAAGAGCTAGAAATCTTGCACACTGAACAAGATGAAGACCTTTGTA
TCGTTGAAAGTCCTGATGAGGTTATTGTTACAAATGAAGTTGTAAAGAAA
GAACCGACCGTCGATGCTGATACTACACCCGAGGTTCTCGCAGCTTAGGT
TGATACTGAATGGCTGTACCAATCAAATGGCTACATTGATCGTACGTATC
TGTCCACATGTTTGTTTCTCCGCATTTTCTTTCTCTTTCCCCGCATATGG
TACCGCTTCCTAACCGTTTGCATCACAGCAACGAAAAATGAAATCTCAGA
GGATTGGGAACTATTAGTGAATATCGCTAACCCACCTAAACCACGCCGAT
CCCGACGCATCAGATCACGTAAATCTAAAGACACTTCACCTGGTAAGAAA
AGAAAACACGAAGAAGTTGAACGTCATTTACCGGGATATTTCTACGTACA
TGAATGCTCACAAGAAAGTGATCCTGATTTTCAACCAAATTCAGCAGATG
ATGATACTGAGCCATGATTGTTGACGATTTTCTTTGCCATCAGCTGCAAT
TTGTTGAAGAAAAACTGACAGATATGAGCACGTGTGCAGACGAACAACAG
CCCTCGACATCAACAAATGATCAACCATCTCCTTCAGCAATCTCATTCAA
ATCATGGGAAAAGGCTCAAACACTACCACGTATTATGGAAGAATTCGAAC
GGTGTAAAAGCTGGTATGAACGTATCAAAAGTCAACATTCTAAAATTGGG
AAAATATGTTACTTGTTTGAAATGATTTTCTTACAATTGTTTACATCCTT
GATGGCTGCATGCTCGACTGAAGTTGTATCGCCCTGGGCTTCGTGGACTA
TGAGTAAAGGTGACATCAGCAAGCGAGAACAGCCACAGTGAAAGCGACGA
AAGTGGAGAAGAGCTAGAAATCTTGCACACTGAACAAGATGAAGACCTTT
GTATCGTTGAAAGTCCTGATGAGGTTATTGTTACAAATGAAGTTGTAAAG
AAAGAACCGACCGTCGATGCTGATACTACACCCGAGGTTCTCGCAGCTTA
GGTTGATACTGAATGGCTGTACCAATCAAATGGCTACATTGATCGTACGT
ATCTGTCCACATGTTTGTTTCTCCGCATTTTCTTTCTCTTTCCCCGCATA
TGGTACCGCTTCCTAACCGTTTGCATCACAGCAACGAAAAATGAAATCTC
AGAGGATTGGGAACTATTAGTGAATATCGCTAACCCACCTAAACCACGCC
GATCCCGACGCATCAGATCACGTAAATCTAAAGACACTTCACCTGGTAAG
AAAAGAAAACACGAAGAAGTTGAACGTCATTTACCGGGATATTTCTACGT
ACATGAATGCTCACAAGAAAGTGATCCTGATTTTCAACCAAATTCAGCAG
ATGATGATACTGAGCCATGATTGTTGACGATTTTCTTTGCCATCAGCTGC
AATTTGTTGAAGAAAAACTGACAGATATGAGCACGTGTGCAGACGAACAA
CAGCCCTCGACATCAACAAATGATCAACCATCTCCTTCAGCAATCTCATT
CAAATCATGGGAAAAGGCTCAAACACTACCACGTATTATGGAAGAATTCG
AACGGTGTAAAAGCTGGTATGAACGTATCAAAAGTCAACATTCTAAAATT
GGGAAAATATGTTACTTGTTTGAAATGATTTTCTTACAATTGTTTACATC
CTTGATGGCTGCATGCTCGACTGAAGTTGTATCGCCCTGGGCTTCGTGGA
CTATGAGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000995XLOC_000995Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001929-exon-sc0000012-1575043694:256110..256291TCONS_00001929-exon-sc0000012-1575043694:256110..256291Clytia hemisphaericaexon
TCONS_00001929-exon-sc0000012-1575043694:255524..255822TCONS_00001929-exon-sc0000012-1575043694:255524..255822Clytia hemisphaericaexon
TCONS_00001929-exon-sc0000012-1575043694:254529..254590TCONS_00001929-exon-sc0000012-1575043694:254529..254590Clytia hemisphaericaexon
TCONS_00001929-exon-sc0000012-1575043694:253916..254278TCONS_00001929-exon-sc0000012-1575043694:253916..254278Clytia hemisphaericaexon
TCONS_00001929-exon-sc0000012-1575043694:253110..253505TCONS_00001929-exon-sc0000012-1575043694:253110..253505Clytia hemisphaericaexon
TCONS_00001929-exon-sc0000012-1510915933:256110..256291TCONS_00001929-exon-sc0000012-1510915933:256110..256291Clytia hemisphaericaexon
TCONS_00001929-exon-sc0000012-1510915933:255524..255822TCONS_00001929-exon-sc0000012-1510915933:255524..255822Clytia hemisphaericaexon
TCONS_00001929-exon-sc0000012-1510915933:254529..254590TCONS_00001929-exon-sc0000012-1510915933:254529..254590Clytia hemisphaericaexon
TCONS_00001929-exon-sc0000012-1510915933:253916..254278TCONS_00001929-exon-sc0000012-1510915933:253916..254278Clytia hemisphaericaexon
TCONS_00001929-exon-sc0000012-1510915933:253110..253505TCONS_00001929-exon-sc0000012-1510915933:253110..253505Clytia hemisphaericaexon
TCONS_00001929-exon-sc0000012-1491911889:256110..256291TCONS_00001929-exon-sc0000012-1491911889:256110..256291Clytia hemisphaericaexon
TCONS_00001929-exon-sc0000012-1491911889:255524..255822TCONS_00001929-exon-sc0000012-1491911889:255524..255822Clytia hemisphaericaexon
TCONS_00001929-exon-sc0000012-1491911889:254529..254590TCONS_00001929-exon-sc0000012-1491911889:254529..254590Clytia hemisphaericaexon
TCONS_00001929-exon-sc0000012-1491911889:253916..254278TCONS_00001929-exon-sc0000012-1491911889:253916..254278Clytia hemisphaericaexon
TCONS_00001929-exon-sc0000012-1491911889:253110..253505TCONS_00001929-exon-sc0000012-1491911889:253110..253505Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001929-proteinTCONS_00001929-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:253110..256291 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2654.54	2660.85	3244.29	3254.98	9.45493	8.8896	2.12829	2.30503	0.385266	5.92911	0.0328854	0.129705	0	0	0.0184313	0	0	0	0	0	3.86014	2.61761	582.184	453.126	0	0.0311027	21.8088	29.7825	260.8	293.5
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001929 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top