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TCONS_00001928 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001928
Unique NameTCONS_00001928
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001928 ID=TCONS_00001928|Name=TCONS_00001928|organism=Clytia hemisphaerica|type=transcript|length=1431bp
CAGCACTGAGTCACAAACGTAGAGGTATGTATCCAAATTTTAGACGTTGT
TTTCTCGACATCTTATTACCTATTTTGTAACACTAAAAAGACTTGGTACT
GTGAGAAATTATAAATCTTACTTTTGGGCATGTAACTTAGAAAAACCTTA
GTGTAGCTTACACTAAATGAACATAGTTTAGTGGGAAGAGACTAAATTGA
GAGACCTTCTAAAATAACAACATAAGCCGCTGTAGTGAAGTAGATTTCGG
TCTATCCAGCATACTAAATCATATTTGagattgaaaattaattttcattt
ttgccatTTAGCAATTGGACCACAATGAGCACGTGTGCAGACGAACAACA
GCCCTCGACATCAACAAATGATCAACCATCTCCTTCAGCAATCTCATTCA
AATCATGGGAAAAGGCTCAAACACTACCACGTATTATGGAAGAATTCGAA
CGGTGTAAAAGCTGGTATGAACGTATCAAAAGTCAACATTCTAAAATTGG
GAAAATATGTTACTTGtttgaaatgattttcttaCAATTGTTTACATCCT
TGATGGCTGCATGCTCGACTGAAGTTGTATCGCCCTGGGCTTCGTGGACT
ATgagtaaagcCATGATTGTTGACGATTTTCTTTGCCATCAGCTGCAATT
TGTTGAAGAAAAACTGACAGATGTTGATACTGAATGGCTGTACCAATCAA
ATGGCTACATTGATCGTACGTATCTGTCCACATGTTTGTTTCTCCgcatt
ttctttctctttccCCGCATATGGTACCGCTTCCTAACCGTTTGCATCAC
AGCAACGAAAAATGAAATCTCAGAGGATTGGGAACTATTAGTGAATATCG
CTAACCCACCTAAACCACGCCGATCCCGACGCATCAGATCACGTAAATCT
AAAGACACTTCACCTGGTAAGAAAAGAAAACACGAAGAAGTTGAACGTCA
TTTACCGGGATATTTCTACGTACATGAATGCTCACAAGAAAGTGATCCTG
ATTTTCAACCAAATTCAGCAGATGATGATACTGAGGTGACATCAGCAAGC
GAGAACAGCCACAGTGAAAGCGACGAAAGTGGAGAAGAGCTAGAAATCTT
GCACACTGAACAAGATGAAGACCTTTGTATCGTTGAAAGTCCTGATGAGG
TTATTGTTACAAATGAAGTTGTAAAGAAAGAACCGACCGTCGATGCTGAT
ACTACACCCGAGGTTCTCGCAGCTTAGGACAAAATTCCTGTTCTACCCCT
CTTTgtttatgttatttttttccaaatatttattTTGCTTGTGCCTgtat
attttaagaaattttctaaaattgtaaaaatttatttaatttaaataGCA
AGAATGAATTTCCTTACAAAATAAAGATTTCAACTCTTTCCAGACTGTCA
ATTCCAGGGTAATATAACAACATACTAGGNT
Run BLAST on NCBI

transcript from alignment at sc0000012:253110..256133-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001928 ID=TCONS_00001928|Name=TCONS_00001928|organism=Clytia hemisphaerica|type=transcript|length=3024bp|location=Sequence derived from alignment at sc0000012:253110..256133- (Clytia hemisphaerica)
CAGCACTGAGTCACAAACGTAGAGGTATGTATCCAAATTTTAGACGTTGT TTTCTCGACATCTTATTACCTATTTTGTAACACTAAAAAGACTTGGTACT GTGAGAAATTATAAATCTTACTTTTGGGCATGTAACTTAGAAAAACCTTA GTGTAGCTTACACTAAATGAACATAGTTTAGTGGGAAGAGACTAAATTGA GAGACCTTCTAAAATAACAACATAAGCCGCTGTAGTGAAGTAGATTTCGG TCTATCCAGCATACTAAATCATATTTGAGATTGAAAATTAATTTTCATTT TTGCCATTTAGCAATTGGACCACAATGAGCACGTGTGCAGACGAACAACA GCCCTCGACATCAACAAATGATCAACCATCTCCTTCAGCAATCTCATTCA AATCATGGGAAAAGGCTCAAACACTACCACGTATTATGGAAGAATTCGAA CGGTGTAAAAGCTGGTATGAACGTATCAAAAGTCAACATTCTAAAATTGG GAAAATATGTTACTTGTTTGAAATGATTTTCTTACAATTGTTTACATCCT TGATGGCTGCATGCTCGACTGAAGTTGTATCGCCCTGGGCTTCGTGGACT ATGAGTAAAGGTTGGTTTTTATAAATCCTAGATTCATAAGTTCTCGTCTT TAAAGTTTGGAAATTTGGAAAAATAGTCTCTCCAAGGGTAGATTCGAACT CTGGGTCGGATATAGCCGTCACCTTGCAAACCTGATAACCCCTCCTCCCC GAGTAGGGACCAGAAAAATACTGTGAAGCTTCGATCGTTTAAAGATTATA ACATAGTGTCCTCCAGGGTTTGTTCCCCCCACCAAATTCTTGATTTTTTT AAATCTCCCCCTCTTTTTTTTTCCCCTTTGACTTTTCAGTTTTTTAGTTT CCCCCCTCTTTTTTGCTTTCCCTCAAAAAATTCTGAAAATATCAGTTCCC CCCATGTACCCATATAAGTTTCTCAAGTTTCAACCTGACATTTTGCTGCA AAAGAGATACTAGACAAAATAGAGCGAAAATGGATTAATGTATACAAACA CGCTTTGAAAAGCAGACTTAAAACAACAATGAAATGAAAAATTGACTGAT CTTGGTTACTGAGATAAAGTTGAAGTGATTTCACACTTCCCCCACACCAA ATCTGCCAACGATCGATGTTTCCCACCTCTTTTTTCCTCTCTTTTTTCCC CCTCTTTACTATTCAAATTTTCATTCCCCCCTCACCCATCCAAAATTGGA ATATTGGTCCCCCCCCCTTATAAAGTAGGGAGGAGGACAGACACTATGTA TAAGGCACTCTTACTCGAGTCAAAGAGGACTTTTAGTTTTCTTAGTTTAT CTCTTGAAATGTGAGGCTGCTGATTTTCTTAATTTGTTACTTTGACTTGA TTTTGGTTACGTTATAAGTTGAGTCTACATTTCTTGTAAAATTATCTTTG TAAAAGGCGTCCATCTTTGGCTTGGATTGCCAGTATTACCTAAACACCTT AAATGGTATAACGCTACTTAATGCTTTATGTTTTCTATTTTAGCCATGAT TGTTGACGATTTTCTTTGCCATCAGCTGCAATTTGTTGAAGAAAAACTGA CAGATGTAAGTCCTGTAAAAAAAGGTCTTATTGGAATGGAAAATAATTTA GAATATATAGTGGCTGATTTATTTTGTTGGCTTGTCAAATTGAGTGACAC TCTCAAAACACGGTGCCCGGCTTTCCGACGGGAGAAATCCCAGGCTATTA TGTTTGGTTCTATGGCAGGATTTTAGTGTTGTTACAATAGATGCAAGATA GAAAATTTTGGTCTCTTTCTCTCAACCTCTGATTTTTATTACATTGTTCA AATAGGTTGATACTGAATGGCTGTACCAATCAAATGGCTACATTGATCGT ACGTATCTGTCCACATGTTTGTTTCTCCGCATTTTCTTTCTCTTTCCCCG CATATGGTACCGCTTCCTAACCGTTTGCATCACAGCAACGAAAAATGAAA TCTCAGAGGATTGGGAACTATTAGTGAATATCGCTAACCCACCTAAACCA CGCCGATCCCGACGCATCAGATCACGTAAATCTAAAGACACTTCACCTGG TAAGAAAAGAAAACACGAAGAAGTTGAACGTCATTTACCGGGATATTTCT ACGTACATGAATGCTCACAAGAAAGTGATCCTGATTTTCAACCAAATTCA GCAGATGATGATACTGAGGTATGATGTAGTAGGATTTTATTTATTTCCTA CAAAACAGGGTTTTGATAATATTCGGGCAATTGAACAAATCAAACTTCTC GTGTTTTATTGCCACCAAATGTTTATTTTCCCAAGAATTGAGCAACGCCA ATTTAAGCCAAAGTGACCCAGTAATCTTATTTTCTCCAAGCAGACAGAGG ATATAATACAAATACCAACGGTGGAGAAACAAAATCTTATGACATATTAA ACTTAAAAATACTCGTGGTATTCTCAGTTGTGTTTTAGGAGTTTACCCTT CCTATTGGTGGGTTAAGGTGCTTTTTTGTTAGGGAATATTAAATCGGAAC TTATTTTAATAACAAATAATTGAAATAGAAACGAGGTTCGAAAGTCATAA TGACCCTTGTGTGATTCCCTTTCTTCAGGTGACATCAGCAAGCGAGAACA GCCACAGTGAAAGCGACGAAAGTGGAGAAGAGCTAGAAATCTTGCACACT GAACAAGATGAAGACCTTTGTATCGTTGAAAGTCCTGATGAGGTTATTGT TACAAATGAAGTTGTAAAGAAAGAACCGACCGTCGATGCTGATACTACAC CCGAGGTTCTCGCAGCTTAGGACAAAATTCCTGTTCTACCCCTCTTTGTT TATGTTATTTTTTTCCAAATATTTATTTTGCTTGTGCCTGTATATTTTAA GAAATTTTCTAAAATTGTAAAAATTTATTTAATTTAAATAGCAAGAATGA ATTTCCTTACAAAATAAAGATTTCAACTCTTTCCAGACTGTCAATTCCAG GGTAATATAACAACATACTAGGNT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000995XLOC_000995Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001928-exon-sc0000012-1575043694:255524..256133TCONS_00001928-exon-sc0000012-1575043694:255524..256133Clytia hemisphaericaexon
TCONS_00001928-exon-sc0000012-1575043694:254529..254590TCONS_00001928-exon-sc0000012-1575043694:254529..254590Clytia hemisphaericaexon
TCONS_00001928-exon-sc0000012-1575043694:253916..254278TCONS_00001928-exon-sc0000012-1575043694:253916..254278Clytia hemisphaericaexon
TCONS_00001928-exon-sc0000012-1575043694:253110..253505TCONS_00001928-exon-sc0000012-1575043694:253110..253505Clytia hemisphaericaexon
TCONS_00001928-exon-sc0000012-1510915933:255524..256133TCONS_00001928-exon-sc0000012-1510915933:255524..256133Clytia hemisphaericaexon
TCONS_00001928-exon-sc0000012-1510915933:254529..254590TCONS_00001928-exon-sc0000012-1510915933:254529..254590Clytia hemisphaericaexon
TCONS_00001928-exon-sc0000012-1510915933:253916..254278TCONS_00001928-exon-sc0000012-1510915933:253916..254278Clytia hemisphaericaexon
TCONS_00001928-exon-sc0000012-1510915933:253110..253505TCONS_00001928-exon-sc0000012-1510915933:253110..253505Clytia hemisphaericaexon
TCONS_00001928-exon-sc0000012-1491911889:255524..256133TCONS_00001928-exon-sc0000012-1491911889:255524..256133Clytia hemisphaericaexon
TCONS_00001928-exon-sc0000012-1491911889:254529..254590TCONS_00001928-exon-sc0000012-1491911889:254529..254590Clytia hemisphaericaexon
TCONS_00001928-exon-sc0000012-1491911889:253916..254278TCONS_00001928-exon-sc0000012-1491911889:253916..254278Clytia hemisphaericaexon
TCONS_00001928-exon-sc0000012-1491911889:253110..253505TCONS_00001928-exon-sc0000012-1491911889:253110..253505Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:253110..256133 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.30324 0.541794 0.633831 0.416895 0 0 0 0 0.144707 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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