TCONS_00001927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001927
Unique NameTCONS_00001927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length730

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001927 ID=TCONS_00001927|Name=TCONS_00001927|organism=Clytia hemisphaerica|type=transcript|length=730bp
TTCACTTTCTACTTGTTTTCCTTTCGTTTAGAAGAtgttcaaagttttaa
aaaacatAATATACCGTAGCTATATaaactgataaaaaataaaaaatgta
aaaatcatGCTATCCATGGCGAAATCTTACGAAAACACCCGAAACAAACT
GTCTTTGACACGCTAGTATACGGTCACTGCGTTCGCTAGGAAAACTGATC
TCGCGGCTTTTAATCCTTATAGTTtcaaacttcaaacaaaaatggtTCAT
TTAAGAAATagtactaaagtctgtctcaattaTAATCTacagtggagaca
aaaaaggctgtaactttagATGgcattttaaaattcaaattctatTGTCT
CTgttgcagattatattgagacagactttagataataaattaacaaaaga
aatcGGCGTACATTTaagtcaaaaagtttttaagaaaGTCCCAATAAATC
AAGAACTCGGTTTTTCCTCTTTAACTTCTAACAACAGTTTCAATAATGTA
TCTTTCTCTCGTAGAGTCACCGGTAATGTTTTCTTGGCATAGAAATCGTC
TCCAAAACGTTCAATATTATCGATGACGTCCGACACGAGGTGAGCTTTAC
CGACATATATTCCACCGACGTCGTTCTTTAAGTGGACGAAATGGACGTGC
AGATGATAGTATGAGGGGAAATAATGAAAGTAGGCACGAATTTGATTAGA
AGGGACATTGTAGGTTTTCTTGATCACCTC
Run BLAST on NCBI

transcript from alignment at sc0000012:245781..247274-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001927 ID=TCONS_00001927|Name=TCONS_00001927|organism=Clytia hemisphaerica|type=transcript|length=1494bp|location=Sequence derived from alignment at sc0000012:245781..247274- (Clytia hemisphaerica)
TTCACTTTCTACTTGTTTTCCTTTCGTTTAGAAGATGTTCAAAGTTTTAA
AAAACATAATATACCGTAGCTATATAAACTGATAAAAAATAAAAAATGTA
AAAATCATGCTATCCATGGCGAAATCTTACGAAAACACCCGAAACAAACT
GTCTTTGACACGCTAGTATACGGTCACTGCGTTCGCTAGGAAAACTGATC
TCGCGGCTTTTAATCCTTATAGTTTCAAACTTCAAACAAAAATGGTTCAT
TTAAGAAATAGTACTAAAGTCTGTCTCAATTATAATCTACAGTGGAGACA
AAAAAGGCTGTAACTTTAGATGGCATTTTAAAATTCAAATTCTATTGTCT
CTGTTGCAGATTATATTGAGACAGACTTTAGATAATAAATTAACAAAAGA
AATCGGCGTACATTTAAGTCAAAAAGTTTTTAAGAAAGTCCCAATAAATC
AAGAACTCGGTTTTTCCTCTTTAACTTCTAACAACAGTTTCAATAATGTA
TCTTTCTCTCGTAGAGTCACCGGTAATGTTTTCTTGGCATAGAAATCGTC
TCCAAAACGTTCAATATTATCGATGACGTCCGACACGAGGTGAGCTTTAC
CGACATATATTCCACCGACGTCGTTCTTTAAGTGGACGAAATGGACGTGC
AGATGATAGTATGAGGGGAAATAATGAAAGTAGGCACGAATTTGATTAGA
AGGGACATTGTAGGTTTTCTTGACCACCTCCTATAATTAGAAGAAAGTAA
AATCTTTAAAAGGATGGGGAGCGTTTTTCTTAGATTTTCAAATCAGAAGC
AGATCACCCATTTCGTTTGCACGATGTACGATGCTTTTAAGACTGGTTTC
TGGCAAATGAGAAAATGATTTTGCTTAGATAATTTTGAACAAATTAGATG
TTATATAATTGAGGATTAATTTTAACAAATAATAGAAAGCAATAAGTATA
TTTCTATAAGTATCATTTTCAATCGTCAATTAATCCTCAGAGTTTTTTGC
GTCCAGAAAAAATAAACCAGGCCATCTAATGTTTAAAAGCGTTGCCTATT
TTTGTCGACTATTGTGCATAGATCCCGGGGGGGGCACTGGGTTTGCGGAC
TGACGGTATGTGCGGGCCAAAAATTGGCTTTTAAAATTGCACCCTTACAG
TGCAGCAAAAATCAGTGAAAATCANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAAATCGTCTCCAAAACGTTCAATATTATCGATGACGTCCGACAC
GAGGTGAGCTTTACCGACATATATTCCACCGACGTCGTTCTTTAAGTGGA
CGAAATGGACGTGCAGATGATAGTATGAGGGGAAATAATGAAAGTAGGCA
CGAATTTGATTAGAAGGGACATTGTAGGTTTTCTTGATCACCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000994XLOC_000994Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001927-exon-sc0000012-1575043694:246562..247274TCONS_00001927-exon-sc0000012-1575043694:246562..247274Clytia hemisphaericaexon
TCONS_00001927-exon-sc0000012-1575043694:245781..245797TCONS_00001927-exon-sc0000012-1575043694:245781..245797Clytia hemisphaericaexon
TCONS_00001927-exon-sc0000012-1510915933:246562..247274TCONS_00001927-exon-sc0000012-1510915933:246562..247274Clytia hemisphaericaexon
TCONS_00001927-exon-sc0000012-1510915933:245781..245797TCONS_00001927-exon-sc0000012-1510915933:245781..245797Clytia hemisphaericaexon
TCONS_00001927-exon-sc0000012-1491911889:246562..247274TCONS_00001927-exon-sc0000012-1491911889:246562..247274Clytia hemisphaericaexon
TCONS_00001927-exon-sc0000012-1491911889:245781..245797TCONS_00001927-exon-sc0000012-1491911889:245781..245797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:245781..247274 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.1785	0.440374	0	0	0.24112	0	0.097397	0	2.65007e-05	0	0	0	0.16733	0	0	0	0	0	0.292192	0.296278	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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