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TCONS_00001924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001924
Unique NameTCONS_00001924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2957

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001924 ID=TCONS_00001924|Name=TCONS_00001924|organism=Clytia hemisphaerica|type=transcript|length=2957bp
aaaacattgctgTAGTCTTTAAACAACTTTGCCAACCTATAATGAAGCTC
AGATCGGCATTGCCGATCTAAAAACAAGTCTAGGTTGGCAGAATTTTCAC
GATTTGCTTCTACTTGAAATTCAAGGGCTgagttttagcctcaaaacaAT
TGACACAAGTTAACTAATGATGAGGCAGTGCAGAGAGGTGGTTCTCTTgt
aaattagactttaactctaatgTAGGTACTGAAAGAAAATGCAAGGTTTG
AACACAAATATCCAGGCATTCAAAGACAGCCcattattttcaacattttt
accCAAGTCTACCAAAGATCAGAGTCAAAATTATGGTCAAGATAAGAAGA
CAGAACATTATAATGCATCATCTTGTTTGCCACTCGATGCTTCAtttgaa
tttgatcaatttttcaatacCCACGTGTTCACTTCTGGACTGACGGACAA
TGGTAAAACTTTGGCCATCTTTGAACAAGATGATAAAGGAAATTTAAACA
TGCATAAATATTGCTATCATAAAGGCCAGATTGNTTAACATTTCTGAAGG
TTTTTTGGATTAGTTTTCAGCCCTCGAATTTCAGGTCAGCATTATGCAGT
GCAGACCTAAAAGCCAACCAAAGAATGTGTATGATTGGCAGTTCATTGCC
GACCATAATCATCAATTCTTTTGGCAGCAGACCATAAgtgataattgaaa
aaaaaacattgctgTAGTCTTTAAACAACTTTGCCAACCTATAATGAAGC
TCAGATCGGCATTGCCGATCTAAAAACAAGTCTAGGTTGGCAGAATTTTC
ACGATTTGCTTCTACTTGAAATTCAAGGGCTgagttttagcctcaaaaca
ATTGACACAAGTTAACTAATGATGAGGCAGTGCAGAGAGGTGGTTCTCTT
gtaaattagactttaactctaatgTAGGTACTGAAAGAAAATGCAAGGTT
TGAACACAAATATCCAGGCATTCAAAGACAGCCcattattttcaacattt
ttaccCAAGTCTACCAAAGATCAGAGTCAAAATTATGGTCAAGATAAGAA
GACAGAACATTATAATGCATCATCTTGTTTGCCACTCGATGCTTCAtttg
aatttgatcaatttttcaatacCCACGTGTTCACTTCTGGACTGATGGAC
AATGGTAAAACTTTGGCCATCTTTGAACAAGATGATAAAGGAAATTTAAA
CATGCATAAATATTGCTATCATAAAGGCCAGATTCAAAGTCTTCATTCCA
GACACTTTAACACATGGTTGATTCGAGATTATGATTATCTTGTCAGTTAT
GATGGCTTATTTGTTGTAATGTTTAATTCTGAAGAACTTGCACATGAAAG
AGACCATCGAAGGAGACGAAAACGTGGCTATGGCCTGGGAGAGAAAGTTT
ACATTTCTTTGCTAGTTTATGACCATGATTTTGAAAATGGTCGAAGTGCA
ATGGGGAAATTTTTCCCGAATTCCTTTGTACTTACCATGTCTGACAAGGA
TGATTCATTGTTTTGGAAATATAAACATGGATATGCTATTGGGGTTGATG
GCACCATAATTGTCTCCTCATGGGGCGTGACTAGAGACACTTTAGATGAA
CAAGATACGGGTGGGACTGCTTTATATTTGAATTATTTCAAAGTTCAACA
AACAAGCTCTAAAATTGCTGTCAAACATTGTGGTTTTACAGATTTGAGTG
GTGCGTTGACTGGCAAACCGTTACCAACAGCTTTCAACGATCCTGAACAN
GAAAGAGACCATCGAAGGAGACGAAAACGTGGCTATGGCCTGGGAGAGAA
AGTTTACATTTCTTTGCTAGTTTATGACCATGATTTTGAAAATGGTCGAA
GTGCAATGGGGAAATTTTTCCCTAATTCCTTTGTACTTACCATGTCTGAC
AAGGATGATTCATTGTTTTGGAAATATAAACATGGATATGCTATTGGCGT
TGATGGCACCATAATTGTCTCCTCGTGGGGCGTGACTAGAGACACTTTAG
ATGAACAAGATACGGGTGGGACTGCTTTATATTTGAATTATTTCAAAGTT
CAACAAACAAGCTCTAAAATTGCTGTCAAACATTGTGGTTGTACAGATTT
GAGTGGTGCGTTGACTGGCAAACCGTTACCAACAGCTTTCAACGATCCTG
CTATTGTATGCAACCAAAACATTACTAAAGTCTTCTTTTTGAGTCATAAT
ATGGTTTACAACGTGATGACGCACTCAATGAGTACATTATCCGAACAAGC
TTTCCAACATAATGTATGGGTTATTCATAGACGGTACGGTGAAATACTGA
TAACCATAGACAGGCCAACTTTCTCGCTACTCAATGTCAAAATATTCAAA
GAGAACGACAAAGGCGAGTATGATCtagtaaacaaattcaaaacaagTCG
AATTATAAGAccaaatgataattttatggaagAGCCTACAATGCATTGTC
ATGGTATAAACAATGGAGAGACTCGACTATTTGTAGAACCAACTCAATCA
TCACGCACGATCTTTGCTGTCAATCCGTTCACTTTAAACATTGATTTCAT
TTTGGGCATTCCTGCAAAGCTTGAGGAACCATTTGTGCGTAAAGTCCTTC
AGAGTGGTGATGAAATTACAGTCCTTGTTACCAGTAATTCTGCTGAGTAT
CTGGTCTCTTATAACATTAACAAATGCACTGAACTGAAAAGTCTCAAGGA
GCTTTCAGCTTTGGTGGTACTTAGAAACTTTTCAATGGATGACATATTGC
AGTATAATATtccaaaattattgaaaacCTATTTAGAGAATAATATTTTT
TACCTCTgattatgaaatgttttatTAACGTTTGTTTGTCTGTTTCATTC
TACTGTTCTGTGtgttttaatgtttatttttcatgttgttttttattttt
ccattatCTGTGCGTTGTAtctgttcttctttttcaacTAGTGTGTACCG
AATTAGA
Run BLAST on NCBI

transcript from alignment at sc0000012:204669..207625-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001924 ID=TCONS_00001924|Name=TCONS_00001924|organism=Clytia hemisphaerica|type=transcript|length=2957bp|location=Sequence derived from alignment at sc0000012:204669..207625- (Clytia hemisphaerica)
AAAACATTGCTGTAGTCTTTAAACAACTTTGCCAACCTATAATGAAGCTC AGATCGGCATTGCCGATCTAAAAACAAGTCTAGGTTGGCAGAATTTTCAC GATTTGCTTCTACTTGAAATTCAAGGGCTGAGTTTTAGCCTCAAAACAAT TGACACAAGTTAACTAATGATGAGGCAGTGCAGAGAGGTGGTTCTCTTGT AAATTAGACTTTAACTCTAATGTAGGTACTGAAAGAAAATGCAAGGTTTG AACACAAATATCCAGGCATTCAAAGACAGCCCATTATTTTCAACATTTTT ACCCAAGTCTACCAAAGATCAGAGTCAAAATTATGGTCAAGATAAGAAGA CAGAACATTATAATGCATCATCTTGTTTGCCACTCGATGCTTCATTTGAA TTTGATCAATTTTTCAATACCCACGTGTTCACTTCTGGACTGACGGACAA TGGTAAAACTTTGGCCATCTTTGAACAAGATGATAAAGGAAATTTAAACA TGCATAAATATTGCTATCATAAAGGCCAGATTGNTTAACATTTCTGAAGG TTTTTTGGATTAGTTTTCAGCCCTCGAATTTCAGGTCAGCATTATGCAGT GCAGACCTAAAAGCCAACCAAAGAATGTGTATGATTGGCAGTTCATTGCC GACCATAATCATCAATTCTTTTGGCAGCAGACCATAAGTGATAATTGAAA AAAAAACATTGCTGTAGTCTTTAAACAACTTTGCCAACCTATAATGAAGC TCAGATCGGCATTGCCGATCTAAAAACAAGTCTAGGTTGGCAGAATTTTC ACGATTTGCTTCTACTTGAAATTCAAGGGCTGAGTTTTAGCCTCAAAACA ATTGACACAAGTTAACTAATGATGAGGCAGTGCAGAGAGGTGGTTCTCTT GTAAATTAGACTTTAACTCTAATGTAGGTACTGAAAGAAAATGCAAGGTT TGAACACAAATATCCAGGCATTCAAAGACAGCCCATTATTTTCAACATTT TTACCCAAGTCTACCAAAGATCAGAGTCAAAATTATGGTCAAGATAAGAA GACAGAACATTATAATGCATCATCTTGTTTGCCACTCGATGCTTCATTTG AATTTGATCAATTTTTCAATACCCACGTGTTCACTTCTGGACTGATGGAC AATGGTAAAACTTTGGCCATCTTTGAACAAGATGATAAAGGAAATTTAAA CATGCATAAATATTGCTATCATAAAGGCCAGATTCAAAGTCTTCATTCCA GACACTTTAACACATGGTTGATTCGAGATTATGATTATCTTGTCAGTTAT GATGGCTTATTTGTTGTAATGTTTAATTCTGAAGAACTTGCACATGAAAG AGACCATCGAAGGAGACGAAAACGTGGCTATGGCCTGGGAGAGAAAGTTT ACATTTCTTTGCTAGTTTATGACCATGATTTTGAAAATGGTCGAAGTGCA ATGGGGAAATTTTTCCCGAATTCCTTTGTACTTACCATGTCTGACAAGGA TGATTCATTGTTTTGGAAATATAAACATGGATATGCTATTGGGGTTGATG GCACCATAATTGTCTCCTCATGGGGCGTGACTAGAGACACTTTAGATGAA CAAGATACGGGTGGGACTGCTTTATATTTGAATTATTTCAAAGTTCAACA AACAAGCTCTAAAATTGCTGTCAAACATTGTGGTTTTACAGATTTGAGTG GTGCGTTGACTGGCAAACCGTTACCAACAGCTTTCAACGATCCTGAACAN GAAAGAGACCATCGAAGGAGACGAAAACGTGGCTATGGCCTGGGAGAGAA AGTTTACATTTCTTTGCTAGTTTATGACCATGATTTTGAAAATGGTCGAA GTGCAATGGGGAAATTTTTCCCTAATTCCTTTGTACTTACCATGTCTGAC AAGGATGATTCATTGTTTTGGAAATATAAACATGGATATGCTATTGGCGT TGATGGCACCATAATTGTCTCCTCGTGGGGCGTGACTAGAGACACTTTAG ATGAACAAGATACGGGTGGGACTGCTTTATATTTGAATTATTTCAAAGTT CAACAAACAAGCTCTAAAATTGCTGTCAAACATTGTGGTTGTACAGATTT GAGTGGTGCGTTGACTGGCAAACCGTTACCAACAGCTTTCAACGATCCTG CTATTGTATGCAACCAAAACATTACTAAAGTCTTCTTTTTGAGTCATAAT ATGGTTTACAACGTGATGACGCACTCAATGAGTACATTATCCGAACAAGC TTTCCAACATAATGTATGGGTTATTCATAGACGGTACGGTGAAATACTGA TAACCATAGACAGGCCAACTTTCTCGCTACTCAATGTCAAAATATTCAAA GAGAACGACAAAGGCGAGTATGATCTAGTAAACAAATTCAAAACAAGTCG AATTATAAGACCAAATGATAATTTTATGGAAGAGCCTACAATGCATTGTC ATGGTATAAACAATGGAGAGACTCGACTATTTGTAGAACCAACTCAATCA TCACGCACGATCTTTGCTGTCAATCCGTTCACTTTAAACATTGATTTCAT TTTGGGCATTCCTGCAAAGCTTGAGGAACCATTTGTGCGTAAAGTCCTTC AGAGTGGTGATGAAATTACAGTCCTTGTTACCAGTAATTCTGCTGAGTAT CTGGTCTCTTATAACATTAACAAATGCACTGAACTGAAAAGTCTCAAGGA GCTTTCAGCTTTGGTGGTACTTAGAAACTTTTCAATGGATGACATATTGC AGTATAATATTCCAAAATTATTGAAAACCTATTTAGAGAATAATATTTTT TACCTCTGATTATGAAATGTTTTATTAACGTTTGTTTGTCTGTTTCATTC TACTGTTCTGTGTGTTTTAATGTTTATTTTTCATGTTGTTTTTTATTTTT CCATTATCTGTGCGTTGTATCTGTTCTTCTTTTTCAACTAGTGTGTACCG AATTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000993XLOC_000993Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001924-exon-sc0000012-1575043694:204669..207625TCONS_00001924-exon-sc0000012-1575043694:204669..207625Clytia hemisphaericaexon
TCONS_00001924-exon-sc0000012-1510915933:204669..207625TCONS_00001924-exon-sc0000012-1510915933:204669..207625Clytia hemisphaericaexon
TCONS_00001924-exon-sc0000012-1491911889:204669..207625TCONS_00001924-exon-sc0000012-1491911889:204669..207625Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:204669..207625 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.8356 17.3724 6.72369 6.15641 2.11235 1.00016 1.47168 0.68634 0.839511 0.664259 0.996924 0.734242 0.911593 1.99816 2.72352 2.78358 2.80047 3.38741 0.242792 0.762192 1.54579 1.50797 9.95129 11.428 1.01781 1.14307 1.25271 1.33693 4.47856 6.54309
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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