TCONS_00001920 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001920
Unique NameTCONS_00001920
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length194

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001920 ID=TCONS_00001920|Name=TCONS_00001920|organism=Clytia hemisphaerica|type=transcript|length=194bp
CCAAGCTGTGACTGCATTTTCTGATATTCTGCTACTAGAAGATGATTTGT
AAATATTCTCTCCAATACTGCTGGAGAATCCATTCCTCCTGAACGAATCA
TGTTCAAACTTGTTGTTGGCACTCAGATATTCAGCAAAGGTTTGTGAACG
ATCGGCCAATTTTTGACTCCATACCATAAGAGGTGTCTTTTGGT
Run BLAST on NCBI

transcript from alignment at sc0000012:181998..182249-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001920 ID=TCONS_00001920|Name=TCONS_00001920|organism=Clytia hemisphaerica|type=transcript|length=252bp|location=Sequence derived from alignment at sc0000012:181998..182249- (Clytia hemisphaerica)
CCAAGCTGTGACTGCATTTTCTGATATTCTGCTACTAGAAGATGATTTGT
AAATATTCTCTCCAATACTGCTGGAGAATCCATTCCTCCTGAACGAATCA
TGTTCAAACTTGTTGTTGGCACTCAGATATTCAGCAAAGGTTTGTGAACG
ATCGGCCAATTTTTGACTCCATACCATAAGAGGTGNATTCAGCAAAGGTT
TGTGCACGATCAGCCAATTTTTGACTCCATACCATAGGAGGTGTCTTTTG
GT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000990XLOC_000990Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001920-exon-sc0000012-1575043694:182068..182249TCONS_00001920-exon-sc0000012-1575043694:182068..182249Clytia hemisphaericaexon
TCONS_00001920-exon-sc0000012-1575043694:181998..182009TCONS_00001920-exon-sc0000012-1575043694:181998..182009Clytia hemisphaericaexon
TCONS_00001920-exon-sc0000012-1510915933:182068..182249TCONS_00001920-exon-sc0000012-1510915933:182068..182249Clytia hemisphaericaexon
TCONS_00001920-exon-sc0000012-1510915933:181998..182009TCONS_00001920-exon-sc0000012-1510915933:181998..182009Clytia hemisphaericaexon
TCONS_00001920-exon-sc0000012-1491911889:182068..182249TCONS_00001920-exon-sc0000012-1491911889:182068..182249Clytia hemisphaericaexon
TCONS_00001920-exon-sc0000012-1491911889:181998..182009TCONS_00001920-exon-sc0000012-1491911889:181998..182009Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:181998..182249 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top