TCONS_00001913 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001913
Unique NameTCONS_00001913
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001913 ID=TCONS_00001913|Name=TCONS_00001913|organism=Clytia hemisphaerica|type=transcript|length=576bp
TGGATTCGTTATTGAAACTATCAGCGGAATCGTTTCTCGAAGGTGATGGC
GTCGAAGTGGATATGAAGAAACGAGAGGTTCGCATCAGCCCAATCTTAAA
ATGGTACAAGGAGGACTTTGGAAGTAATAAACAAGAAtACGTTCAATATG
TACGCGACAACATGGGTGATTGTGAAAAGAAACGACAAATTGACGAACTG
TTGCAGTCAGGAAATTTTAAGCTTGGATATTTGAAATACGACTGGAGTGT
TAATTCTAAATAACCAAGTATCATATTTTTATCGACAATTTTTCAACGCT
GGAGAGATTTAAATATGATTGACAATTTCAACTCTAACACACTAAATCTT
CAAAATGATATCTGATGAAAGATGAAATTCCACAGATAAGTCAAATACGT
GATAAAATGATTTGTGGTTATCGTTCAAGCGTTCAAGTTTATGGTCAGAA
ATtaatttctctctttttaaTTGCTGCCAAGGACTTTTAAAGACAAGACT
TTGAAGAGCAGAGCTTTGAAGGGTTTTTTAAGACGCTTTATATTATTCCC
GATATATACAAAAGAATCCTCAGATA
Run BLAST on NCBI

transcript from alignment at sc0000012:123489..124970-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001913 ID=TCONS_00001913|Name=TCONS_00001913|organism=Clytia hemisphaerica|type=transcript|length=1482bp|location=Sequence derived from alignment at sc0000012:123489..124970- (Clytia hemisphaerica)
TGGATTCGTTATTGAAACTATCAGCGGAATCGTTTCTCGAAGGTGATGGC
GTCGAAGTGGATATGAAGAAACGAGAGGTATATAATTTTGAAAACTACCT
TAAAAACTATCCTTTTTATTAGAACGATAACATTATCTTCATTGCACTTT
TTTTTTATAAGAACAATTGACTCAAAAATGCCTACAAATATGAACAACTT
AACAACTTCTTAGTCCGAATTGCTGAATGTGTTTGGTTAAAGTATAACAA
ATGGCAATGAAGCAAAAAAAAACCTGCGTACAGAAGAATATAATAAGAAC
GATTCGAAAGTCAAAGCCCATTCTGAAAAAATATATCAATAGAACAATAA
TAGAATAATAGATCTTCGAAAAAGTAAAACTTAAAATACGAAATTTAATT
CTCCTTCTTTCAGACAATACTAGGAGTCATTATTCGTGTTTTTTTTGACC
TAATATCGAACCTAAACGTCATAAATAGTCTTGAGGTGTTTAAGGCGTAG
AAGATGTTGACTTCTTCAAGGCGATCTAAAAATTCTCTCTCTTAAAAATG
CATTTTCTTTTGTTACAATTTTTCTATTATTCGATGTTTACAGGTTCGCA
TCAGCCCAATCTTAAAATGGTACAAGGAGGACTTTGGAAGTAATAAACAA
GAAGTAAGTTTGTTGATATTTACGACATTAAAGACAATAATTCAAAAGTT
TCTAAGGATATAGGTGTGTATGTGTCTTCTGCTAAATAACCACTTGGGGA
ATTTCCCAAGTGTCAAATAGCTTTTCTTGGCACAATTGAGGAATTTTTGA
AAAGTCTACAGTCCATTGTATGAAGCTGCATTCCGTCTTAAAACATTCCC
CGGGAGGCACTTTAGGCAAAATCGGGTACGTGAAACGTGCCGCTGATTAG
GGTCCCTTCCGTAGGTTCTAAAGATATCCGAAAATTATTCTTTCGGAAAG
GTTCCTAATTTACTAGTTTATTTGATTTTTAGTGATTGGGTTTTGATTGA
TTTGAATTCTACATTTCCCATCATTTTCATTCTTTTTTTACAGTACGTTC
AATATGTACGCGACAACATGGGTGATTGTGAAAAGAAACGACAAATTGAC
GAACTGTTGCAGTCAGGAAATTTTAAGCTTGGATATTTGAAATACGACTG
GAGTGTTAATTCTAAATAACCAAGTATCATATTTTTATCGACAATTTTTC
AACGCTGGAGAGATTTAAATATGATTGACAATTTCAACTCTAACACACTA
AATCTTCAAAATGATATCTGATGAAAGATGAAATTCCACAGATAAGTCAA
ATACGTGATAAAATGATTTGTGGTTATCGTTCAAGCGTTCAAGTTTATGG
TCAGAAATTAATTTCTCTCTTTTTAATTGCTGCCAAGGACTTTTAAAGAC
AAGACTTTGAAGAGCAGAGCTTTGAAGGGTTTTTTAAGACGCTTTATATT
ATTCCCGATATATACAAAAGAATCCTCAGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000987XLOC_000987Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001913-exon-sc0000012-1575043694:124894..124970TCONS_00001913-exon-sc0000012-1575043694:124894..124970Clytia hemisphaericaexon
TCONS_00001913-exon-sc0000012-1575043694:124318..124377TCONS_00001913-exon-sc0000012-1575043694:124318..124377Clytia hemisphaericaexon
TCONS_00001913-exon-sc0000012-1575043694:123489..123927TCONS_00001913-exon-sc0000012-1575043694:123489..123927Clytia hemisphaericaexon
TCONS_00001913-exon-sc0000012-1510915933:124894..124970TCONS_00001913-exon-sc0000012-1510915933:124894..124970Clytia hemisphaericaexon
TCONS_00001913-exon-sc0000012-1510915933:124318..124377TCONS_00001913-exon-sc0000012-1510915933:124318..124377Clytia hemisphaericaexon
TCONS_00001913-exon-sc0000012-1510915933:123489..123927TCONS_00001913-exon-sc0000012-1510915933:123489..123927Clytia hemisphaericaexon
TCONS_00001913-exon-sc0000012-1491911889:124894..124970TCONS_00001913-exon-sc0000012-1491911889:124894..124970Clytia hemisphaericaexon
TCONS_00001913-exon-sc0000012-1491911889:124318..124377TCONS_00001913-exon-sc0000012-1491911889:124318..124377Clytia hemisphaericaexon
TCONS_00001913-exon-sc0000012-1491911889:123489..123927TCONS_00001913-exon-sc0000012-1491911889:123489..123927Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:123489..124970 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.92691	9.23827	3.50254	1.17792	21.7708	13.5981	17.2755	15.7077	11.7305	13.8238	11.4589	7.46824	11.9583	9.08042	7.35555	8.24708	6.24098	6.99185	6.98781	8.28004	6.35566	6.56485	7.98044	10.2785	8.61456	15.6545	6.36255	6.22443	9.44202	10.2758
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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