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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001909 ID=TCONS_00001909|Name=TCONS_00001909|organism=Clytia hemisphaerica|type=transcript|length=3439bpRun BLAST on NCBI transcript from alignment at sc0000012:100209..115503- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001909 ID=TCONS_00001909|Name=TCONS_00001909|organism=Clytia hemisphaerica|type=transcript|length=15295bp|location=Sequence derived from alignment at sc0000012:100209..115503- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00001909 vs. Swiss-Prot (Human)
Match: PYR1 (CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3) HSP 1 Score: 1456.43 bits (3769), Expect = 0.000e+0 Identity = 743/1145 (64.89%), Postives = 897/1145 (78.34%), Query Frame = 3
Query: 9 MATLILDDGTKYHGQIFGDERSIAGEVVFQTGMVGYPESLTDPSYNSQILVLTYPLIGNYGIPNDSRDEHGMLKFFESEKIWNNGMIVGDLTEDYSHWLATKSLSEWLKEHKIPGITGIDTRALTKKLRENGTMLGKIVLDGEDEASVPFDDPNKRNLIAEVSCKEPKLYNPKGKIKMIAVDFGIKYNQIRCLIDCDCQVLVVPWDYDYSTLLKNKEYDGLFMSNGPGDPSLCQVSIDTLRKVITELPDVPVFGICMGHQILSLAAGCGSYKMKYGNRGHNQPATHLETQRCFITCQNHGFAIDTDSLPKEWSVLFTNENDGSNEGIVHNTKPIFSVQFHPEHQGGPRDLELLFGFFVDIVNKLKIDS--NLCLRTMLKETLTFHPAEETRSRAFKPKKVXXXXXXXXXXXQAGEFDYSGSQAIKALKEEKIHTVLINPNIATVQTSKGLADKTYFLPVNFEFTSKVIEVERPDGILLSFGGQTALNCGLLLKERGILEKYNVAVLGTPTKSIEWTEDRKMFSDKMGEIGEKVAPSSVAYTVDEAITAANRLGYPVXXXXXXXXXXXXXXXXXNDNELKKLAASAFAHSKQCLVDKSLKGWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGESIVVAPSQTLTNEEYNMLRRTAIKVIRKLGVVGECNIQYALHPDSKEFYIIEVNXXXXXXXXXXXXXTGYPLAYVAAKLALGIPLPKLRNSVTNSTTACFEPSLDYCVVKVPRWDLDKFQRVSTKIGSSMKSVGEVMAIGRSFEEAIQKSLRMVDDSNLGFDANNLELDEQVLVEPSDKRIFHVAAALRRGYSIDQLYELTRIDKWFLSKLAKIINYAKMLEEKYPKVGAGKDTIPCNILLKGKQLGFSDKQIANCVQSSELVIRKYRYECNILPCFKQIDTVAAEFPAEANYLYLTYNGDCDDVTYAESQNKVMVIGSGVYRIGSSVEFDACAVGCIRELKRLGKSTIMVNYNPETVSTDYDECDRLYFDEITFETIMDIYHKEDPEGIILSMGGQVANNIAMHLHRQEVRILGTSPEMIDNAENRFKFSRMLDNIGILQPTWKELTTMEEAYQFCTKVGYPVLVRPSYVLSGAAMNVVYAEDDLESYLGSAVSISKEHPVVISKFISNA 3437
MA L+L+DG+ GQ FG S AGEVVFQTGMVGYPE+LTDPSY +QILVLTYPLIGNYGIP D DE G+ K+FES I ++VG+ SHW AT++L EWL++H IPG+ G+DTR LTKKLRE G++LGK+V +G + +S+PF DPN R L+ EVS K P+++N G +++A+D G+KYNQIRCL +V VVPWD+ L ++EY+GLF+SNGPGDP+ + TL +V++E PVFGIC+GHQ+L+LA G +YKM+YGNRGHNQP + + RCF+T QNHGFA++TDSLP +W+ LFTN NDGSNEGIVHN+ P FSVQFHPEHQ GP D+ELLF F++ V + + +R L E L S P+KVLILGSGGLSIGQAGEFDYSGSQAIKALKEE I T+LINPNIATVQTS+GLADK YFLP+ + ++VI ERPDG+LL+FGGQTALNCG+ L + G+L +Y V VLGTP ++IE TEDR+ F+ +M EIGE VAPS A ++++A AA RLGYPVL+RAAFALGGLGSGFASN EL L A AFAH+ Q LVDKSLKGWKE+EYEVVRDAY NC+TVCNMEN DPLGIHTGESIVVAPSQTL + EY +LR+TAIKV + LG+VGECN+QYAL+P+S+++YIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLP+LRNSVT T A FEPS+DYCVVK+PRWDL KF RVSTKIGS MKSVGEVM IGRSFEEA QK+LRMVD++ +GFD + + L P+DKRIF VAAAL GYS+D+LYELTRID+WFL ++ +II +A++LE+ +P ++L + K LGFSDKQIA V S+EL +RK R E I P KQIDTVAAE+PA+ NYLYLTY G D+T+ V+V+GSGVYRIGSSVEFD CAVGCI++L+++G TIMVNYNPETVSTDYD CDRLYFDEI+FE +MDIY E+PEG+ILSMGGQ+ NN+AM LHRQ+ R+LGTSPE ID+AENRFKFSR+LD IGI QP W+EL+ +E A QFC VGYP +VRPSYVLSGAAMNV Y + DLE +L SA ++SKEHPVVISKFI A
Sbjct: 1 MAALVLEDGSVLRGQPFGAAVSTAGEVVFQTGMVGYPEALTDPSYKAQILVLTYPLIGNYGIPPDEMDEFGLCKWFESSGIHVAALVVGECCPTPSHWSATRTLHEWLQQHGIPGLQGVDTRELTKKLREQGSLLGKLVQNGTEPSSLPFLDPNARPLVPEVSIKTPRVFNTGGAPRILALDCGLKYNQIRCLCQRGAEVTVVPWDHA----LDSQEYEGLFLSNGPGDPASYPSVVSTLSRVLSEPNPRPVFGICLGHQLLALAIGAKTYKMRYGNRGHNQPCLLVGSGRCFLTSQNHGFAVETDSLPADWAPLFTNANDGSNEGIVHNSLPFFSVQFHPEHQAGPSDMELLFDIFLETVKEATAGNPGGQTVRERLTERLCPPGIPTPGSGLPPPRKVLILGSGGLSIGQAGEFDYSGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLLTFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEAANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHTSQVLVDKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQTAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLPELRNSVTGGT-AAFEPSVDYCVVKIPRWDLSKFLRVSTKIGSCMKSVGEVMGIGRSFEEAFQKALRMVDENCVGFDHTVKPVSDMELETPTDKRIFVVAAALWAGYSVDRLYELTRIDRWFLHRMKRIIAHAQLLEQHR------GQPLPPDLLQQAKCLGFSDKQIALAVLSTELAVRKLRQELGICPAVKQIDTVAAEWPAQTNYLYLTYWGTTHDLTFRTPH--VLVLGSGVYRIGSSVEFDWCAVGCIQQLRKMGYKTIMVNYNPETVSTDYDMCDRLYFDEISFEVVMDIYELENPEGVILSMGGQLPNNMAMALHRQQCRVLGTSPEAIDSAENRFKFSRLLDTIGISQPQWRELSDLESARQFCQTVGYPCVVRPSYVLSGAAMNVAYTDGDLERFLSSAAAVSKEHPVVISKFIQEA 1132 HSP 2 Score: 113.62 bits (283), Expect = 4.348e-25 Identity = 104/374 (27.81%), Postives = 178/374 (47.59%), Query Frame = 3
Query: 1245 EFDYSGSQAIKALKEEKIHTVLINPNIATVQTSKGLADKTYFLPVNFEFTSKVIEVERPDGILLSFGGQTALNCGLLLKERGILEKYNVAVLGTPTKSIEWTEDRKMFSDKMGEIGEKVAPSSVAYTVDEAITAANRLGYPVXXXXXXXXXXXXXXXXXNDNELKKLAASAFAHSKQ--CLVDKSLKGWKEVEYEVVRDAYDNCITVCNM-ENFDPLGIHTGESIVVAPSQTLTNEEYNMLRRTAIKVIRKLGVVGECNIQYALHPDSKEFYIIEVNXXXXXXXXXXXXXTGYPLAYVAAKLALGIPLPKLRNSVTNSTTACFEPSLDYCVVKVPRWDLDKFQRVSTKIGSSMKSVGEVMAIGRSFEEAIQKSL 2357
EFD+ I+ L++ T+++N N TV T + D+ YF ++FE + E+E P+G++LS GGQ N + L + VLGT ++I+ E+R FS + IG ++ A +GYP ++R ++ L G A D +L++ +SA A SK+ ++ K ++ KE++ + V A D + + E+ + G+H+G++ +V P Q +T + ++ V ++L V G N+Q D + +IE N R+SRS SK G L +A ++ +G + + +T S VKVP++ + +G M S GEV G S EA K++
Sbjct: 950 EFDWCAVGCIQQLRKMGYKTIMVNYNPETVSTDYDMCDRLYFDEISFEVVMDIYELENPEGVILSMGGQLPNNMAM------ALHRQQCRVLGTSPEAIDSAENRFKFSRLLDTIGISQPQWRELSDLESARQFCQTVGYPCVVRPSYVLSGAAMNVAYTDGDLERFLSSAAAVSKEHPVVISKFIQEAKEIDVDAV--ASDGVVAAIAISEHVENAGVHSGDATLVTPPQDITAKTLERIKAIVHAVGQELQVTGPFNLQLIAKDD--QLKVIECNVRVSRSFPFVSKTLGVDLVALATRVIMGEEVEPV-GLMTGSGVVG---------VKVPQFSFSRLAGADVVLGVEMTSTGEVAGFGESRCEAYLKAM 1303 The following BLAST results are available for this feature:
BLAST of TCONS_00001909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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