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TCONS_00001907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001907
Unique NameTCONS_00001907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1957

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001907 ID=TCONS_00001907|Name=TCONS_00001907|organism=Clytia hemisphaerica|type=transcript|length=1957bp
AGAGGGGAATTTTAGAGAAATACAATGTTGCTGTTCTTGGTACACCTACC
AAATCGATTGAATGGACAGAAGATAGGAAAATGTTTTCAGACAAGATGGG
AGAGATTGGTGAGAAAGTTGCACCAAGCTCAGTGGCTTATACTGTGGATG
AGGCTATCACAGCAGCTAACAGGCTAGGATATCCAGTGTTGTTACGTGCA
GCATTTGCACTAGGTGGACTTGGATCTGGTTTTGCTTCCAATGACAATGA
GCTCAAAAAGCTTGCAGCATCGGCTTTTGCACATTCCAAACAGTGTCTAG
TTGACAAGTCACTGAAAGGATGGAAAGAAGTTGAATATGAAGTTGTTAGA
GATGCTTATGACAACTGTATCACTGTTTGTAATATGGAAAACTTTGACCC
TTTGGGAATCCATACGGGTGAATCAATTGTTGTTGCACCAAGTCAAACAC
TAACAAATGAGGAATACAATATGCTTAGAAGAACAGCCATCAAAGTCATC
CGTAAACTTGGTGTTGTTGGTGAATGTAACATCCAGTATGCTTTACACCC
TGACTCAAAAGAGTTCTACATCATTGAGGTCAATGCTCGTCTCTCCAGAA
GTTCAGCTCTTGCTTCCAAAGCAACTGGATACCCATTGGCTTACGTTGCT
GCTAAACTTGCACTTGGTATTCCTCTACCAAAACTGAGAAATTCTGTCAC
CAATTCAACTACCGCTTGTTTTGAGCCCTCTTTGGATTATTGTGTTGTGA
AAGTTCCTCGATGGGATCTGGACAAATTTCAGAGGGTTTCAACAAAGATT
GGATCTTCGATGAAGAGTGTTGGTGAAGTAATGGCTATTGGAAGAAGTTT
TGAGGAAGCCATTCAAAAGAGTTTGAGAATGGTTGACGATTCAAACCTTG
GTTTTGATGCAAACAACCTCGAGTTGGATGAACAGGTCTTAGTTGAGCCC
TCTGACAAAAGAATCTTTCATGTTGCTGCTGCACTCCGTAGAGGATATTC
TATTGATCAGCTGTATGAGCTCACTCGTATTGATAAGTGGTTTTTGAGCA
AGCTAGCAAAAATAATCAACTATGCAAAAATGCTGGAAGAGAAATACCCA
AAGGTTGGAGCTGGAAAGGACACCATTCCATGCAATATCCTACTGAAGGG
GAAGCAGCTTGGATTTTCAGATAAGCAAATTGCTAACTGCGTTCAAAGTT
CTGAACTGGTTATCCGCAAGTACCGTTATGAATGCAACATTTTGCCCTGT
TTCAAGCAAATTGACACTGTTGCTGCAGAATTCCCAGCTGAAGCTAACTA
TCTGTATTTAACTTACAATGGAGattgtgatgacgtcacatacGCAGAAA
GCCAAAACAAAGTCATGGTTATTGGGTCAGGTGTCTACAGAATCGGAAGC
AGTGTTGAATTTGATGCATGTGCTGTTGGATGTATTCGAGAATTGAAGAG
GCTTGGTAAGAGCACAATTATGGTGAATTACAATCCTGAAACTGTCAGTA
CAGACTATGATGAATGTGATCGATTGTACTTCGATGAAATCACATTTGAG
ACAATCATGGATATCTACCATAAAGAAGACCCAGAAGGTATTATCTTATC
AATGGGAGGACAGGTTGCCAACAACATTGCTATGCATCTCCACAGACAGG
AAGTGAGGATCCTTGGCACATCGCCAGAAATGATTGACAACGCTGAAAAC
AGATTCAAATTCTCTCGTATGCTAGACAACATTGGAATCCTACAACCAAC
ATGGAAAGAGTTGACCACGATGGAGGAAGCCTATCAATTCTGCACCAAAG
TTGGTTACCCAGTGCTGGTACGACCTTCATACGTGTTGAGTGGAGCTGCC
ATGAATGTTGTTTATGCTGAAGATGATTTAGAATCATATCTTGGATCTGC
TGTCTCCATCTCTAAGGAGCATCCAGTTGTCATCTCCAAATTTATATCCA
ATGCTAA
Run BLAST on NCBI

transcript from alignment at sc0000012:100209..108098-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001907 ID=TCONS_00001907|Name=TCONS_00001907|organism=Clytia hemisphaerica|type=transcript|length=7890bp|location=Sequence derived from alignment at sc0000012:100209..108098- (Clytia hemisphaerica)
AGAGGGGAATTTTAGAGAAATACAATGTTGCTGTTCTTGGTACACCTACC AAATCGATTGAATGGACAGAAGATAGGAAAATGTTTTCAGACAAGATGGG AGAGATTGGTGAGAAAGTTGCACCAAGCTCAGTGGCTTATACTGTGGATG AGGTGAGTAATTTCTTTTGAAAAAAATAGAAAAAATAGTTATTCATAATT TCTTATGTTTGCTTTATAAAAAAATTCAAAGGTTGCATTTTTTGGTTCTC AGAAAGTCTCCTTCTTATAAAAATATAGTTGATTCAATGATCCTCACTCT CTGATCCACAGCCAAGCCACCAGTTGAGCATGCTCAATTCAGTTGCTTAC TATAGAAATATGCTCTTGGTTTTCATATGCTTTTCATTATATTTTTAGGC TATCACAGCAGCTAACAGGCTAGGATATCCAGTGTTGTTACGTGCAGCAT TTGCACTAGGTGGACTTGGATCTGGTTTTGCTTCCAATGACAATGAGCTC AAAAAGCTTGCAGCATCGGCTTTTGCACATTCCAAACAGTGTCTAGTTGA CAAGTCACTGAAAGGATGGAAAGAAGTTGAATATGAAGTTGTTAGAGATG CTTATGACAACTGTATCACTGTAAGTTATTCTTTTGAAGGAGTTTCAATT AGTTATTCTATTCTATTCTTTGTCTGTAAACAGCGTTTGTCTTTTGGAAA TTAATGCATTCTTTTAGGAAGTATATTCGTAATAATTTCAATAGTGGGCT TCCCCATTTTTGATTTTCTGCTTTTTGAAAAAAGGTTCGGGTTGGAGGTG GTGATGTCCCAATTTAAATATTCTGCCCAAACAAAATAAGTTTACAATAC GAATTTGAAGATGATGCCCATAATTTGTGAAATATCTTAGGAAGGGTATA TTCTCTGTTACTTAAAAGCCCTCAGCTTTAAACTTGTGTTTGATTACAAA TAAGCTATATGTTTTCCAGGTTTGTAATATGGAAAACTTTGACCCTTTGG GAATCCATACGGGTGAATCAATTGTTGTTGCACCAAGTCAAACACTAACA AATGAGGAATACAATATGCTTAGAAGAACAGCCATCAAAGTCATCCGTAA ACTTGGTGTTGTTGGTGAATGTAACATCCAGTATGCTTTACACCCTGACT CAAAAGAGGTACAAGTACTTGACCACTTGAGCAGACTGGAACACTTTTAC CCCTTTACCCCAATGAAACCTTCTTTTATACATTTGCTTGTTACAGCATC TCAAAAAGACTTGTTTTGTGGTGACTCAATTTTCCTTTCTTTGTCTTTAT TTTGTTCAATTTCTTCAATCCCAGAAGAGAAACACTTGCTGATTATCAAT TTATCTTTATTTGTTTTTGTCAATCAGACTTTGATTAGACACTTAGACAC AAAAACCTTTTGCATCATTGGTAAATGAATTTCTAATTTTTGGTTTTGAA ACAAAGAATTAAAGCATAATATTTCTGAATCTTAATATTGCATCAACCTT TTTTATAGTTCTACATCATTGAGGTCAATGCTCGTCTCTCCAGAAGTTCA GCTCTTGCTTCCAAAGCAACTGGATACCCATTGGCTTACGTTGCTGCTAA ACTTGCACTTGGTATTCCTCTACCAAAACTGAGAAATTCTGTCACCAATT CAACTACCGCTTGTTTTGAGCCCTCTTTGGATTATTGTGTTGTGAAAGTT CCTCGATGGGATCTGGACAAATTTCAGAGGGTTTCAACAAAGGTGATTTG ATTGTTTTGATATCGTGTACCAAAATCCATATTATATGAAAGGAGATTTG TTTTTGACTGAACCAGTAGTTGATTAACATCCAATGCATATGGAAAAGTT TGACAGTTGATATAGATCTATTCTGGTTAAACCAAAGCCAAAATTGTAGC AGCCTTTCGATTTATAAATTTATCTTGGAATCAGGTGTGAAGTTTTGTAC CTTTTTCTTTTCTAATGCCATTTGTGTTTTTTAGATTGGATCTTCGATGA AGAGTGTTGGTGAAGTAATGGCTATTGGAAGAAGTTTTGAGGAAGCCATT CAAAAGAGTTTGAGAATGGTTGACGATTCAAACCTTGGTTTTGATGCAAA CAACCTCGAGTTGGATGAACAGGTATCTCCTGAAGTTTATCAGTCAATTT CTTTTTTAGTCTATTATATTACAGCTTAAAAACAGGCTTAATCTTTTTCT CACAAGATTCGAACAAAATGTAAGAGTTGGTCCAATAAGGTTCTCCAGTG TCTGGTGCTTGTTACCTAATCTAGGAAGATACCTTTTTCTTCGACTAATA GAAAAATCTTTACTGTAATTGTCACTACAATTTATCTTTTGAAAAAAAAA TCACATAATGTATCCTTTAAAGCAGTTCTAGTTATTATACTTACCTTGCT TCAATTTTCGGTCATTTGTTTCTCAATCAAAATTTGGTTAAATGCCTAGG TATCTAAAAATTATCTGCAATGGTTTACAATGTGACGTTTCCAATGGAAT ATATATGATTGGAAGATTTATGATTAACTTGACTTTCTGCCAATTCTCTT AGGTCTTAGTTGAGCCCTCTGACAAAAGAATCTTTCATGTTGCTGCTGCA CTCCGTAGAGGATATTCTATTGATCAGCTGTATGAGCTCACTCGTATTGA TAAGTGGTTTTTGAGCAAGCTAGCAAAAATAATCAACTATGCAAAAATGC TGGAAGAGAAATACCCAAAGGTAAAAGTTTTTATGAAATTTGACTTTTTT GTCCTAGGTTCTCTGTAACTCTTCTTTTTTGGCAGGGTTTGGAAGCTTAG TTGAGTTTGTCTGCGGTCATTCATTATCATGATTTTAACAGAAAAAAACA GTATTTCGGAATAAAAGCAGGTAAACCAATTGCTTAATTTGGTTACTAAC ATAAGCTGAAAATGATTTTCTTCTTCAGAAAATCACGATAAATATTCTTT ATTGTTTTTAGGTTGGAGCTGGAAAGGACACCATTCCATGCAATATCCTA CTGAAGGGGAAGCAGCTTGGATTTTCAGATAAGCAAATTGCTAACTGCGT TCAAAGGTTGTGACTTTATCTTTTAGATTTTACTACTTGACCATTTTATG TACTTAAACTTAGATTGAGTCAGATTAATTAAATTTTCTAGACTTTACAA ATAAAACTTCTTTAAAGAGTTCTTCAACGTCTTAGCCTAGTGAATCGGCG ATGCCAGGATCAAACCGCTACTTCATCTTCTTGCTCTACTCTGATAACCG AACTTAATACTCTGCAAAAGAGTAGTCCAAAGTGAGTGGATTATGAGTTC AACATTATGGAATGCAGACTAAGATTTATCAACTTGAACTTGAATGTTTT TCTCTTCAGTTCTGAACTGGTTATTCGCAAGTACCGTTATGAATGCAACA TTTTGCCCTGTTTCAAGCAAATTGACACTGTTGCTGCAGAATTCCCAGCT GAAGCTAACTATCTGTATTTAACTTACAATGGAGATTGTGATGACGTCAC ATACGCAGAAAGCCAAAACAAAGTCATGGTTATTGGGTCAGGTGTCTACA GAATCGGAAGCAGTGTTGAATTTGATGCATGTGCTGTTGGATGTATTCGA GAATTGAAGAGGGTAAGTATAGAAATGATTCTTAAGTCAAATCAACTCAA CGACTTAAGCTACCAAAATTACTTTGAAAAGTTCCTAAAGTTTGACCGAA GATATTCCTCCAATGTTACTTGCTCTTGAGTAATTGACCGTGCATTCCCC TGTAATGTACATTGGGCTCCAGTCTTCCCCATCATATTTCTTGCAGTTAC ATTATTAGCTATTCAACTTTCCACCCTACATATTCTCTATTTCAGCTTGG TAAGAGCACAATTATGGTGAATTACAATCCTGAAACTGTCAGTACAGACT ATGATGAATGTGATCGATTGTACTTCGATGAAATCACATTTGAGGTAATT CTTTATCAACCGATAATTCAAATTGTCATTTTNTTCTGCGGTCATTCATT ATCATGATTTTAACAGAAAAAAACAGTATTTCGGAATAAAAGCAGGTAAA CCAATAGCTTAATTTGGTTACTAACATAAGCTGAAAATGATTTTCTTCTT CAGAAAATCACGATAAATATTCTTTATTGTTTTTAGGTTGGAGCTGGAAA GGACACCATTCCATGCAATATCCTACTGAAGGGGAAGCAGCTTGGATTTT CAGATAAGCAAATTGCTAACTGCGTTCAAAGGTTGTGACTTTATCTTTAG ACTTAGACTTAAACTTAGATTGAGTCAGATTAATTAAATTTTCTAGACTT TACAAATAAAATTTCTTTAAAGAGTTCTTCAACGTCTTAGCCTAGTGAAT CGGCGATGCCAGGATCAAACCGCTACTTCATCTTCTTGCTCTACTCTGAT AACCGAACTTAATACGCTGCAAAAGAGTAGTCCAAAGTAAGTGGATTATG AGTTCAACATTATGGAATGCAGACTAAGATTTATCAACTTGAACTTGAAT GTTTTTCTCTTCAGTTCTGAACTGGTTATCCGCAAGTACCGTTATGAATG CAACATTTTGCCCTGTTTCAAGCAAATTGACACTGTTGCTGCAGAATTCC CAGCTGAAGCTAACTATCTGTATTTAACTTACAATGGAGATTGTGATGAC GTCACATACGCAGAAAGCCAAAACAAAGTCATGGTTATTGGGTCAGGTGT CTACAGAATCGGAAGCAGTGTTGAATTTGATGCATGTGCTGTTGGATGTA TTCGAGAATTGAAGAGGGTAAGTATAGAAATGATTCTTAAGTCAAATCAA CTCAACGACTTAAGCTACCAAAATTACTTTGAAAAGTTCCTAAAGTTTGA CCGAAGATATTCCTCCAATGTTACTTGCTCTTGAGTAATTGACCGTGCAT TCCCCTGTAATGTACATTGGGCTCCAGTCTTCCCCATCATATTTCTTGCA GTTACATTATTAGCTATTCAACTTTCCACCCTACATATTCTCTATTTCAG CTTGGTAAGAGCACAATTATGGTGAATTACAATCCTGAAACTGTCAGTAC AGACTATGATGAATGTGATCGATTGTACTTCGATGAAATCACATTTGAGG TAATTCTTTATCAACCGATAATTCAAATTGTCATTTTTCTGTTAACCCTG AAAGCTGACAAGGTATTTGCTAATTTTAGTCCTAACTATTTCAAAGAGTC CCTGTGACTAATTCAACCTGCCTTCAAACCAAACAGATGACCTAAACAGA TTGAACAGAACTTTAGAAATCATCAAAACACGACTTGTCTTTTTTCCAGA CAATCATGGATATCTACCATAAAGAAGACCCAGAAGGTATTATCTTATCA ATGGGAGGACAGGTTGCCAACAACATTGCTATGCATCTCCACAGACAGGA AGTAAGGCTTTAACATCTGAAAACATTTACCAGAGTTCAGAAATTATCCA AATAATATTCACATTCCTCATGTTTACTTTAATCTTCTTGCTACCCCCAA TGTTTGTTTATAATTTGGAAAGTTCCCCTGGATGTTTGTCTATTTTTAAG AGTTTCCTTACAATCTTCATGTAATTGTAATGGAAATGGTAATGTCTTGG AAAAATATTATGACCAAAAACGTCATGTCATTTTTACTAAGATATTTGTT TTTCCATTAGGTGAGGATCCTTGGCACATCGCCAGAAATGATTGACAACG CTGAAAACAGATTCAAATTCTCTCGTATGCTAGACAACATTGGAATCCTA CAACCAACATGGAAAGAGTTGACCACGATGGAGGTGAGCTCATCAGTTAT TCATAATGCACCTATCAAACCTTGAACTTTGGTCTTACTTACTTAAAATG GATGTCTGTGTTTATTGCTTTTTATTGCTGATATGCCATCAAATACAGAA TATCTAACCCTGANAATATTATGGTCTTGGAAAAATATTATGACCAAAAA CGTCACGTCATTTTTACTAAGATATTTGTTTTTCCATTAGGTGAGGATCC TTGGCACATCGCCAGAAATGATTGACAACGCTGAAAACAGATTCAAATTC TCTCGTATGCTAGACAACATTGGAATCCTACAACCAACATGGAAAGAGTT GACCACGATGGAGGTGAGCTCATCAGTTATTCATAATGCACCTATCAAAC CTTGAACTTTGGTCTTACTTACTTAAAATGGATGTCTGTGTTTATTGCTT TTNTGATCGATTGTACTTCGATGAGATCACATTTGAGGTAATTCTTTATC AACCGATAATTCAAATTGTCATTTTTCTGTTAACCCTGAAAGCTGACATG GTATTTGCTAATTTTAGTCCTAACTATTTCAAAGAGTCCCTGTGACTAAT TCAACCTGCCTTCAAACCAAACAGATGACCTAAACAGATTGAACAGAACT TTAGAAATCATCAAAACACGACTTGTCTTTTTTCCAGACAATCATGGATA TCTACCATAAAGAAGACCCAGAAGGTATTATCTTATCAATGGGAGGACAG GTTGCCAACAACATTGCTATGCATCTCCACAGACAGGAAGTAAGGCTTTA ACATCTGAAAACATTTACCAGAGTTCAGAAATTATCCAAATAATATTCAC ATTCCTCATGTTTACTTTAATCTTCTTGCTACCCCCAATGTTTGTTTATA ATTTGGAAAGTTCCCCTGGATGTTTGTCTATTTTTAAGAGTTTCCTTACA ATCTTCATGTAATTGTAATGGAAATGGTAAAATATTATGGTCTTGGAAAA ATATTATGACCAAAAACGTCACGTCATTTTTACTAAGATATTTGTTTTTC CATTAGGTGAGGATCCTTGGCACATCGCCAGAAATGATTGACAACGCTGA AAACAGATTCAAATTCTCTCGTATGCTAGACAACATTGGAATCCTACAAC CAACATGGAAAGAGTTGACCACGATGGAGGTGAGCTCATCAGTTATTCAT AATGCACCTATCAAACCTTGAACTTTGGTCTTACTTACTTAAAATGGATG TCTGTGTTTATTGTATGGATATGCCATCAAATATAGAATATCTAACCCTG ATAAATTCAAACCCAAATCTCTTTGATGGAGTTTGTTACTGTCAACCTTG GTTTGTGTTAGTTAAGTTTCTAATCCCAGATTTTCATTGCATCCTTATTT AAGTTCTTCACGATTTGCTCTTAGCTATTTTGGATATTCAAACTCTGAAT TTACAGATTTTGCCCGGGGGGACGGTATGTGAGGCAAAAAAAATGGCTTT TAGAATCGCACCCTTACAGTGCAGAAAAAATCGGTGAAATTCATACCCTT ACAGTGCATTTTTTCACATTTTAAACTCGTTTAGAGCATGAAAAGATTTT CGAGAAAAAATTAGCAATTTTTCCTAGATTTGCTGAAATTTTCACCCATA CAGTGCATTTATCAAAAGTCCACCCTTACAGTGCATTTCTGATATTTTGA AAAACATACCCTTAACCACCGCACATACCCGTCGGNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCACGAG ATTTTGCAGACAAAATAATTTACTATTCAGTCATTACCATTTCTGCATTT TGTTTAAGGAAGCCTATCAATTCTGCACCAAAGTTGGTTACCCAGTGCTG GTACGACCTTCATACGTGTTGAGTGGAGCTGCCATGAATGTTGTTTATGC TGAAGATGATTTAGAATCATATCTTGGATCTGCTGTCTCCATCTCTAAGG AGCATCCAGTTGTCATCTCCAAATTTATATCCAATGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000986XLOC_000986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001907-exon-sc0000012-1575043694:107947..108098TCONS_00001907-exon-sc0000012-1575043694:107947..108098Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1575043694:107479..107700TCONS_00001907-exon-sc0000012-1575043694:107479..107700Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1575043694:106941..107129TCONS_00001907-exon-sc0000012-1575043694:106941..107129Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1575043694:106357..106590TCONS_00001907-exon-sc0000012-1575043694:106357..106590Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1575043694:105977..106114TCONS_00001907-exon-sc0000012-1575043694:105977..106114Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1575043694:105379..105546TCONS_00001907-exon-sc0000012-1575043694:105379..105546Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1575043694:105043..105137TCONS_00001907-exon-sc0000012-1575043694:105043..105137Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1575043694:103332..103584TCONS_00001907-exon-sc0000012-1575043694:103332..103584Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1575043694:103000..103098TCONS_00001907-exon-sc0000012-1575043694:103000..103098Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1575043694:102698..102799TCONS_00001907-exon-sc0000012-1575043694:102698..102799Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1575043694:102361..102438TCONS_00001907-exon-sc0000012-1575043694:102361..102438Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1575043694:101170..101214TCONS_00001907-exon-sc0000012-1575043694:101170..101214Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1575043694:100209..100390TCONS_00001907-exon-sc0000012-1575043694:100209..100390Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1510915933:107947..108098TCONS_00001907-exon-sc0000012-1510915933:107947..108098Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1510915933:107479..107700TCONS_00001907-exon-sc0000012-1510915933:107479..107700Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1510915933:106941..107129TCONS_00001907-exon-sc0000012-1510915933:106941..107129Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1510915933:106357..106590TCONS_00001907-exon-sc0000012-1510915933:106357..106590Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1510915933:105977..106114TCONS_00001907-exon-sc0000012-1510915933:105977..106114Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1510915933:105379..105546TCONS_00001907-exon-sc0000012-1510915933:105379..105546Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1510915933:105043..105137TCONS_00001907-exon-sc0000012-1510915933:105043..105137Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1510915933:103332..103584TCONS_00001907-exon-sc0000012-1510915933:103332..103584Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1510915933:103000..103098TCONS_00001907-exon-sc0000012-1510915933:103000..103098Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1510915933:102698..102799TCONS_00001907-exon-sc0000012-1510915933:102698..102799Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1510915933:102361..102438TCONS_00001907-exon-sc0000012-1510915933:102361..102438Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1510915933:101170..101214TCONS_00001907-exon-sc0000012-1510915933:101170..101214Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1510915933:100209..100390TCONS_00001907-exon-sc0000012-1510915933:100209..100390Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1491911889:107947..108098TCONS_00001907-exon-sc0000012-1491911889:107947..108098Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1491911889:107479..107700TCONS_00001907-exon-sc0000012-1491911889:107479..107700Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1491911889:106941..107129TCONS_00001907-exon-sc0000012-1491911889:106941..107129Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1491911889:106357..106590TCONS_00001907-exon-sc0000012-1491911889:106357..106590Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1491911889:105977..106114TCONS_00001907-exon-sc0000012-1491911889:105977..106114Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1491911889:105379..105546TCONS_00001907-exon-sc0000012-1491911889:105379..105546Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1491911889:105043..105137TCONS_00001907-exon-sc0000012-1491911889:105043..105137Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1491911889:103332..103584TCONS_00001907-exon-sc0000012-1491911889:103332..103584Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1491911889:103000..103098TCONS_00001907-exon-sc0000012-1491911889:103000..103098Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1491911889:102698..102799TCONS_00001907-exon-sc0000012-1491911889:102698..102799Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1491911889:102361..102438TCONS_00001907-exon-sc0000012-1491911889:102361..102438Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1491911889:101170..101214TCONS_00001907-exon-sc0000012-1491911889:101170..101214Clytia hemisphaericaexon
TCONS_00001907-exon-sc0000012-1491911889:100209..100390TCONS_00001907-exon-sc0000012-1491911889:100209..100390Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:100209..108098 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00494148 0 0 0 0 0 0 0 0 1.45674e-05 0 1.00801e-06 0 0.492773 8.74929e-08 0 0.00100558 0 0.00307239 0 0.00172099 0.00056869 7.9679e-10 0 0 0 0 0.000296176 7.53028e-09 0
Blast
BLAST of TCONS_00001907 vs. Swiss-Prot (Human)
Match: PYR1 (CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3)

HSP 1 Score: 870.922 bits (2249), Expect = 0.000e+0
Identity = 448/650 (68.92%), Postives = 529/650 (81.38%), Query Frame = 3
Query:    6 GILEKYNVAVLGTPTKSIEWTEDRKMFSDKMGEIGEKVAPSSVAYTVDEAITAANRLGYPVXXXXXXXXXXXXXXXXXNDNELKKLAASAFAHSKQCLVDKSLKGWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGESIVVAPSQTLTNEEYNMLRRTAIKVIRKLGVVGECNIQYALHPDSKEFYIIEVNXXXXXXXXXXXXXTGYPLAYVAAKLALGIPLPKLRNSVTNSTTACFEPSLDYCVVKVPRWDLDKFQRVSTKIGSSMKSVGEVMAIGRSFEEAIQKSLRMVDDSNLGFDANNLELDEQVLVEPSDKRIFHVAAALRRGYSIDQLYELTRIDKWFLSKLAKIINYAKMLEEKYPKVGAGKDTIPCNILLKGKQLGFSDKQIANCVQSSELVIRKYRYECNILPCFKQIDTVAAEFPAEANYLYLTYNGDCDDVTYAESQNKVMVIGSGVYRIGSSVEFDACAVGCIRELKRLGKSTIMVNYNPETVSTDYDECDRLYFDEITFETIMDIYHKEDPEGIILSMGGQVANNIAMHLHRQEVRILGTSPEMIDNAENRFKFSRMLDNIGILQPTWKELTTMEEAYQFCTKVGYPVLVRPSYVLSGAAMNVVYAEDDLESYLGSAVSISKEHPVVISKFISNA 1955
            G+L +Y V VLGTP ++IE TEDR+ F+ +M EIGE VAPS  A ++++A  AA RLGYPVL+RAAFALGGLGSGFASN  EL  L A AFAH+ Q LVDKSLKGWKE+EYEVVRDAY NC+TVCNMEN DPLGIHTGESIVVAPSQTL + EY +LR+TAIKV + LG+VGECN+QYAL+P+S+++YIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLP+LRNSVT  T A FEPS+DYCVVK+PRWDL KF RVSTKIGS MKSVGEVM IGRSFEEA QK+LRMVD++ +GFD     + +  L  P+DKRIF VAAAL  GYS+D+LYELTRID+WFL ++ +II +A++LE+           +P ++L + K LGFSDKQIA  V S+EL +RK R E  I P  KQIDTVAAE+PA+ NYLYLTY G   D+T+      V+V+GSGVYRIGSSVEFD CAVGCI++L+++G  TIMVNYNPETVSTDYD CDRLYFDEI+FE +MDIY  E+PEG+ILSMGGQ+ NN+AM LHRQ+ R+LGTSPE ID+AENRFKFSR+LD IGI QP W+EL+ +E A QFC  VGYP +VRPSYVLSGAAMNV Y + DLE +L SA ++SKEHPVVISKFI  A
Sbjct:  492 GVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEAANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHTSQVLVDKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQTAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLPELRNSVTGGT-AAFEPSVDYCVVKIPRWDLSKFLRVSTKIGSCMKSVGEVMGIGRSFEEAFQKALRMVDENCVGFDHTVKPVSDMELETPTDKRIFVVAAALWAGYSVDRLYELTRIDRWFLHRMKRIIAHAQLLEQHR------GQPLPPDLLQQAKCLGFSDKQIALAVLSTELAVRKLRQELGICPAVKQIDTVAAEWPAQTNYLYLTYWGTTHDLTFRTPH--VLVLGSGVYRIGSSVEFDWCAVGCIQQLRKMGYKTIMVNYNPETVSTDYDMCDRLYFDEISFEVVMDIYELENPEGVILSMGGQLPNNMAMALHRQQCRVLGTSPEAIDSAENRFKFSRLLDTIGISQPQWRELSDLESARQFCQTVGYPCVVRPSYVLSGAAMNVAYTDGDLERFLSSAAAVSKEHPVVISKFIQEA 1132          

HSP 2 Score: 103.219 bits (256), Expect = 1.807e-22
Identity = 60/194 (30.93%), Postives = 97/194 (50.00%), Query Frame = 3
Query: 1356 NKVMVIGSGVYRIGSSVEFDACAVGCIRELKRLGKSTIMVNYNPETVSTDYDECDRLYFDEITFETIMDIYHKEDPEGIILSMGGQVANNIAMH------LHRQEVRILGTSPEMIDNAENRFKFSRMLDNIGILQPTWKELTTMEEAYQFCTKVGYPVLVRPSYVLSGAAMNVVYAEDDLESYLGSAVSISKE 1919
             KV+++GSG   IG + EFD      I+ LK     T+++N N  TV T     D++YF  IT   +  +   E P+G++L+ GGQ A N  +       L R  VR+LGT  E I+  E+R  F+  +  IG      +   ++E+A     ++GYPVLVR ++ L G         ++L + +  A + + +
Sbjct:  394 RKVLILGSGGLSIGQAGEFDYSGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLLTFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEAANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHTSQ 587          
The following BLAST results are available for this feature:
BLAST of TCONS_00001907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PYR11.807e-2268.92CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3[more]
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