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TCONS_00001906 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001906
Unique NameTCONS_00001906
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1956

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001906 ID=TCONS_00001906|Name=TCONS_00001906|organism=Clytia hemisphaerica|type=transcript|length=1956bp
GAGGGGAATTTTAGAGAAATACAATGTTGCTGTTCTTGGTACACCTACCA
AATCGATTGAATGGACAGAAGATAGGAAAATGTTTTCAGACAAGATGGGA
GAGATTGGTGAGAAAGTTGCACCAAGCTCAGTGGCTTATACTGTGGATGA
GGCTATCACAGCAGCTAACAGGCTAGGATATCCAGTGTTGTTACGTGCAG
CATTTGCACTAGGTGGACTTGGATCTGGTTTTGCTTCCAATGACAATGAG
CTCAAAAAGCTTGCAGCATCGGCTTTTGCACATTCCAAACAGTGTCTAGT
TGACAAGTCACTGAAAGGATGGAAAGAAGTTGAATATGAAGTTGTTAGAG
ATGCTTATGACAACTGTATCACTGTTTGTAATATGGAAAACTTTGACCCT
TTGGGAATCCATACGGGTGAATCAATTGTTGTTGCACCAAGTCAAACACT
AACAAATGAGGAATACAATATGCTTAGAAGAACAGCCATCAAAGTCATCC
GTAAACTTGGTGTTGTTGGTGAATGTAACATCCAGTATGCTTTACACCCT
GACTCAAAAGAGTTCTACATCATTGAGGTCAATGCTCGTCTCTCCAGAAG
TTCAGCTCTTGCTTCCAAAGCAACTGGATACCCATTGGCTTACGTTGCTG
CTAAACTTGCACTTGGTATTCCTCTACCAAAACTGAGAAATTCTGTCACC
AATTCAACTACCGCTTGTTTTGAGCCCTCTTTGGATTATTGTGTTGTGAA
AGTTCCTCGATGGGATCTGGACAAATTTCAGAGGGTTTCAACAAAGATTG
GATCTTCGATGAAGAGTGTTGGTGAAGTAATGGCTATTGGAAGAAGTTTT
GAGGAAGCCATTCAAAAGAGTTTGAGAATGGTTGACGATTCAAACCTTGG
TTTTGATGCAAACAACCTCGAGTTGGATGAACAGGTCTTAGTTGAGCCCT
CTGACAAAAGAATCTTTCATGTTGCTGCTGCACTCCGTAGAGGATATTCT
ATTGATCAGCTGTATGAGCTCACTCGTATTGATAAGTGGTTTTTGAGCAA
GCTAGCAAAAATAATCAACTATGCAAAAATGCTGGAAGAGAAATACCCAA
AGGTTGGAGCTGGAAAGGACACCATTCCATGCAATATCCTACTGAAGGGG
AAGCAGCTTGGATTTTCAGATAAGCAAATTGCTAACTGCGTTCAAAGTTC
TGAACTGGTTATCCGCAAGTACCGTTATGAATGCAACATTTTGCCCTGTT
TCAAGCAAATTGACACTGTTGCTGCAGAATTCCCAGCTGAAGCTAACTAT
CTGTATTTAACTTACAATGGAGattgtgatgacgtcacatacGCAGAAAG
CCAAAACAAAGTCATGGTTATTGGGTCAGGTGTCTACAGAATCGGAAGCA
GTGTTGAATTTGATGCATGTGCTGTTGGATGTATTCGAGAATTGAAGAGG
CTTGGTAAGAGCACAATTATGGTGAATTACAATCCTGAAACTGTCAGTAC
AGACTATGATGAATGTGATCGATTGTACTTCGATGAAATCACATTTGAGA
CAATCATGGATATCTACCATAAAGAAGACCCAGAAGGTATTATCTTATCA
ATGGGAGGACAGGTTGCCAACAACATTGCTATGCATCTCCACAGACAGGA
AGTGAGGATCCTTGGCACATCGCCAGAAATGATTGACAACGCTGAAAACA
GATTCAAATTCTCTCGTATGCTAGACAACATTGGAATCCTACAACCAACA
TGGAAAGAGTTGACCACGATGGAGGAAGCCTATCAATTCTGCACCAAAGT
TGGTTACCCAGTGCTGGTACGACCTTCATACGTGTTGAGTGGAGCTGCCA
TGAATGTTGTTTATGCTGAAGATGATTTAGAATCATATCTTGGATCTGCT
GTCTCCATCTCTAAGGAGCATCCAGTTGTCATCTCCAAATTTATATCCAA
TGCTAA
Run BLAST on NCBI

transcript from alignment at sc0000012:100209..108097-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001906 ID=TCONS_00001906|Name=TCONS_00001906|organism=Clytia hemisphaerica|type=transcript|length=7889bp|location=Sequence derived from alignment at sc0000012:100209..108097- (Clytia hemisphaerica)
GAGGGGAATTTTAGAGAAATACAATGTTGCTGTTCTTGGTACACCTACCA AATCGATTGAATGGACAGAAGATAGGAAAATGTTTTCAGACAAGATGGGA GAGATTGGTGAGAAAGTTGCACCAAGCTCAGTGGCTTATACTGTGGATGA GGTGAGTAATTTCTTTTGAAAAAAATAGAAAAAATAGTTATTCATAATTT CTTATGTTTGCTTTATAAAAAAATTCAAAGGTTGCATTTTTTGGTTCTCA GAAAGTCTCCTTCTTATAAAAATATAGTTGATTCAATGATCCTCACTCTC TGATCCACAGCCAAGCCACCAGTTGAGCATGCTCAATTCAGTTGCTTACT ATAGAAATATGCTCTTGGTTTTCATATGCTTTTCATTATATTTTTAGGCT ATCACAGCAGCTAACAGGCTAGGATATCCAGTGTTGTTACGTGCAGCATT TGCACTAGGTGGACTTGGATCTGGTTTTGCTTCCAATGACAATGAGCTCA AAAAGCTTGCAGCATCGGCTTTTGCACATTCCAAACAGTGTCTAGTTGAC AAGTCACTGAAAGGATGGAAAGAAGTTGAATATGAAGTTGTTAGAGATGC TTATGACAACTGTATCACTGTAAGTTATTCTTTTGAAGGAGTTTCAATTA GTTATTCTATTCTATTCTTTGTCTGTAAACAGCGTTTGTCTTTTGGAAAT TAATGCATTCTTTTAGGAAGTATATTCGTAATAATTTCAATAGTGGGCTT CCCCATTTTTGATTTTCTGCTTTTTGAAAAAAGGTTCGGGTTGGAGGTGG TGATGTCCCAATTTAAATATTCTGCCCAAACAAAATAAGTTTACAATACG AATTTGAAGATGATGCCCATAATTTGTGAAATATCTTAGGAAGGGTATAT TCTCTGTTACTTAAAAGCCCTCAGCTTTAAACTTGTGTTTGATTACAAAT AAGCTATATGTTTTCCAGGTTTGTAATATGGAAAACTTTGACCCTTTGGG AATCCATACGGGTGAATCAATTGTTGTTGCACCAAGTCAAACACTAACAA ATGAGGAATACAATATGCTTAGAAGAACAGCCATCAAAGTCATCCGTAAA CTTGGTGTTGTTGGTGAATGTAACATCCAGTATGCTTTACACCCTGACTC AAAAGAGGTACAAGTACTTGACCACTTGAGCAGACTGGAACACTTTTACC CCTTTACCCCAATGAAACCTTCTTTTATACATTTGCTTGTTACAGCATCT CAAAAAGACTTGTTTTGTGGTGACTCAATTTTCCTTTCTTTGTCTTTATT TTGTTCAATTTCTTCAATCCCAGAAGAGAAACACTTGCTGATTATCAATT TATCTTTATTTGTTTTTGTCAATCAGACTTTGATTAGACACTTAGACACA AAAACCTTTTGCATCATTGGTAAATGAATTTCTAATTTTTGGTTTTGAAA CAAAGAATTAAAGCATAATATTTCTGAATCTTAATATTGCATCAACCTTT TTTATAGTTCTACATCATTGAGGTCAATGCTCGTCTCTCCAGAAGTTCAG CTCTTGCTTCCAAAGCAACTGGATACCCATTGGCTTACGTTGCTGCTAAA CTTGCACTTGGTATTCCTCTACCAAAACTGAGAAATTCTGTCACCAATTC AACTACCGCTTGTTTTGAGCCCTCTTTGGATTATTGTGTTGTGAAAGTTC CTCGATGGGATCTGGACAAATTTCAGAGGGTTTCAACAAAGGTGATTTGA TTGTTTTGATATCGTGTACCAAAATCCATATTATATGAAAGGAGATTTGT TTTTGACTGAACCAGTAGTTGATTAACATCCAATGCATATGGAAAAGTTT GACAGTTGATATAGATCTATTCTGGTTAAACCAAAGCCAAAATTGTAGCA GCCTTTCGATTTATAAATTTATCTTGGAATCAGGTGTGAAGTTTTGTACC TTTTTCTTTTCTAATGCCATTTGTGTTTTTTAGATTGGATCTTCGATGAA GAGTGTTGGTGAAGTAATGGCTATTGGAAGAAGTTTTGAGGAAGCCATTC AAAAGAGTTTGAGAATGGTTGACGATTCAAACCTTGGTTTTGATGCAAAC AACCTCGAGTTGGATGAACAGGTATCTCCTGAAGTTTATCAGTCAATTTC TTTTTTAGTCTATTATATTACAGCTTAAAAACAGGCTTAATCTTTTTCTC ACAAGATTCGAACAAAATGTAAGAGTTGGTCCAATAAGGTTCTCCAGTGT CTGGTGCTTGTTACCTAATCTAGGAAGATACCTTTTTCTTCGACTAATAG AAAAATCTTTACTGTAATTGTCACTACAATTTATCTTTTGAAAAAAAAAT CACATAATGTATCCTTTAAAGCAGTTCTAGTTATTATACTTACCTTGCTT CAATTTTCGGTCATTTGTTTCTCAATCAAAATTTGGTTAAATGCCTAGGT ATCTAAAAATTATCTGCAATGGTTTACAATGTGACGTTTCCAATGGAATA TATATGATTGGAAGATTTATGATTAACTTGACTTTCTGCCAATTCTCTTA GGTCTTAGTTGAGCCCTCTGACAAAAGAATCTTTCATGTTGCTGCTGCAC TCCGTAGAGGATATTCTATTGATCAGCTGTATGAGCTCACTCGTATTGAT AAGTGGTTTTTGAGCAAGCTAGCAAAAATAATCAACTATGCAAAAATGCT GGAAGAGAAATACCCAAAGGTAAAAGTTTTTATGAAATTTGACTTTTTTG TCCTAGGTTCTCTGTAACTCTTCTTTTTTGGCAGGGTTTGGAAGCTTAGT TGAGTTTGTCTGCGGTCATTCATTATCATGATTTTAACAGAAAAAAACAG TATTTCGGAATAAAAGCAGGTAAACCAATTGCTTAATTTGGTTACTAACA TAAGCTGAAAATGATTTTCTTCTTCAGAAAATCACGATAAATATTCTTTA TTGTTTTTAGGTTGGAGCTGGAAAGGACACCATTCCATGCAATATCCTAC TGAAGGGGAAGCAGCTTGGATTTTCAGATAAGCAAATTGCTAACTGCGTT CAAAGGTTGTGACTTTATCTTTTAGATTTTACTACTTGACCATTTTATGT ACTTAAACTTAGATTGAGTCAGATTAATTAAATTTTCTAGACTTTACAAA TAAAACTTCTTTAAAGAGTTCTTCAACGTCTTAGCCTAGTGAATCGGCGA TGCCAGGATCAAACCGCTACTTCATCTTCTTGCTCTACTCTGATAACCGA ACTTAATACTCTGCAAAAGAGTAGTCCAAAGTGAGTGGATTATGAGTTCA ACATTATGGAATGCAGACTAAGATTTATCAACTTGAACTTGAATGTTTTT CTCTTCAGTTCTGAACTGGTTATTCGCAAGTACCGTTATGAATGCAACAT TTTGCCCTGTTTCAAGCAAATTGACACTGTTGCTGCAGAATTCCCAGCTG AAGCTAACTATCTGTATTTAACTTACAATGGAGATTGTGATGACGTCACA TACGCAGAAAGCCAAAACAAAGTCATGGTTATTGGGTCAGGTGTCTACAG AATCGGAAGCAGTGTTGAATTTGATGCATGTGCTGTTGGATGTATTCGAG AATTGAAGAGGGTAAGTATAGAAATGATTCTTAAGTCAAATCAACTCAAC GACTTAAGCTACCAAAATTACTTTGAAAAGTTCCTAAAGTTTGACCGAAG ATATTCCTCCAATGTTACTTGCTCTTGAGTAATTGACCGTGCATTCCCCT GTAATGTACATTGGGCTCCAGTCTTCCCCATCATATTTCTTGCAGTTACA TTATTAGCTATTCAACTTTCCACCCTACATATTCTCTATTTCAGCTTGGT AAGAGCACAATTATGGTGAATTACAATCCTGAAACTGTCAGTACAGACTA TGATGAATGTGATCGATTGTACTTCGATGAAATCACATTTGAGGTAATTC TTTATCAACCGATAATTCAAATTGTCATTTTNTTCTGCGGTCATTCATTA TCATGATTTTAACAGAAAAAAACAGTATTTCGGAATAAAAGCAGGTAAAC CAATAGCTTAATTTGGTTACTAACATAAGCTGAAAATGATTTTCTTCTTC AGAAAATCACGATAAATATTCTTTATTGTTTTTAGGTTGGAGCTGGAAAG GACACCATTCCATGCAATATCCTACTGAAGGGGAAGCAGCTTGGATTTTC AGATAAGCAAATTGCTAACTGCGTTCAAAGGTTGTGACTTTATCTTTAGA CTTAGACTTAAACTTAGATTGAGTCAGATTAATTAAATTTTCTAGACTTT ACAAATAAAATTTCTTTAAAGAGTTCTTCAACGTCTTAGCCTAGTGAATC GGCGATGCCAGGATCAAACCGCTACTTCATCTTCTTGCTCTACTCTGATA ACCGAACTTAATACGCTGCAAAAGAGTAGTCCAAAGTAAGTGGATTATGA GTTCAACATTATGGAATGCAGACTAAGATTTATCAACTTGAACTTGAATG TTTTTCTCTTCAGTTCTGAACTGGTTATCCGCAAGTACCGTTATGAATGC AACATTTTGCCCTGTTTCAAGCAAATTGACACTGTTGCTGCAGAATTCCC AGCTGAAGCTAACTATCTGTATTTAACTTACAATGGAGATTGTGATGACG TCACATACGCAGAAAGCCAAAACAAAGTCATGGTTATTGGGTCAGGTGTC TACAGAATCGGAAGCAGTGTTGAATTTGATGCATGTGCTGTTGGATGTAT TCGAGAATTGAAGAGGGTAAGTATAGAAATGATTCTTAAGTCAAATCAAC TCAACGACTTAAGCTACCAAAATTACTTTGAAAAGTTCCTAAAGTTTGAC CGAAGATATTCCTCCAATGTTACTTGCTCTTGAGTAATTGACCGTGCATT CCCCTGTAATGTACATTGGGCTCCAGTCTTCCCCATCATATTTCTTGCAG TTACATTATTAGCTATTCAACTTTCCACCCTACATATTCTCTATTTCAGC TTGGTAAGAGCACAATTATGGTGAATTACAATCCTGAAACTGTCAGTACA GACTATGATGAATGTGATCGATTGTACTTCGATGAAATCACATTTGAGGT AATTCTTTATCAACCGATAATTCAAATTGTCATTTTTCTGTTAACCCTGA AAGCTGACAAGGTATTTGCTAATTTTAGTCCTAACTATTTCAAAGAGTCC CTGTGACTAATTCAACCTGCCTTCAAACCAAACAGATGACCTAAACAGAT TGAACAGAACTTTAGAAATCATCAAAACACGACTTGTCTTTTTTCCAGAC AATCATGGATATCTACCATAAAGAAGACCCAGAAGGTATTATCTTATCAA TGGGAGGACAGGTTGCCAACAACATTGCTATGCATCTCCACAGACAGGAA GTAAGGCTTTAACATCTGAAAACATTTACCAGAGTTCAGAAATTATCCAA ATAATATTCACATTCCTCATGTTTACTTTAATCTTCTTGCTACCCCCAAT GTTTGTTTATAATTTGGAAAGTTCCCCTGGATGTTTGTCTATTTTTAAGA GTTTCCTTACAATCTTCATGTAATTGTAATGGAAATGGTAATGTCTTGGA AAAATATTATGACCAAAAACGTCATGTCATTTTTACTAAGATATTTGTTT TTCCATTAGGTGAGGATCCTTGGCACATCGCCAGAAATGATTGACAACGC TGAAAACAGATTCAAATTCTCTCGTATGCTAGACAACATTGGAATCCTAC AACCAACATGGAAAGAGTTGACCACGATGGAGGTGAGCTCATCAGTTATT CATAATGCACCTATCAAACCTTGAACTTTGGTCTTACTTACTTAAAATGG ATGTCTGTGTTTATTGCTTTTTATTGCTGATATGCCATCAAATACAGAAT ATCTAACCCTGANAATATTATGGTCTTGGAAAAATATTATGACCAAAAAC GTCACGTCATTTTTACTAAGATATTTGTTTTTCCATTAGGTGAGGATCCT TGGCACATCGCCAGAAATGATTGACAACGCTGAAAACAGATTCAAATTCT CTCGTATGCTAGACAACATTGGAATCCTACAACCAACATGGAAAGAGTTG ACCACGATGGAGGTGAGCTCATCAGTTATTCATAATGCACCTATCAAACC TTGAACTTTGGTCTTACTTACTTAAAATGGATGTCTGTGTTTATTGCTTT TNTGATCGATTGTACTTCGATGAGATCACATTTGAGGTAATTCTTTATCA ACCGATAATTCAAATTGTCATTTTTCTGTTAACCCTGAAAGCTGACATGG TATTTGCTAATTTTAGTCCTAACTATTTCAAAGAGTCCCTGTGACTAATT CAACCTGCCTTCAAACCAAACAGATGACCTAAACAGATTGAACAGAACTT TAGAAATCATCAAAACACGACTTGTCTTTTTTCCAGACAATCATGGATAT CTACCATAAAGAAGACCCAGAAGGTATTATCTTATCAATGGGAGGACAGG TTGCCAACAACATTGCTATGCATCTCCACAGACAGGAAGTAAGGCTTTAA CATCTGAAAACATTTACCAGAGTTCAGAAATTATCCAAATAATATTCACA TTCCTCATGTTTACTTTAATCTTCTTGCTACCCCCAATGTTTGTTTATAA TTTGGAAAGTTCCCCTGGATGTTTGTCTATTTTTAAGAGTTTCCTTACAA TCTTCATGTAATTGTAATGGAAATGGTAAAATATTATGGTCTTGGAAAAA TATTATGACCAAAAACGTCACGTCATTTTTACTAAGATATTTGTTTTTCC ATTAGGTGAGGATCCTTGGCACATCGCCAGAAATGATTGACAACGCTGAA AACAGATTCAAATTCTCTCGTATGCTAGACAACATTGGAATCCTACAACC AACATGGAAAGAGTTGACCACGATGGAGGTGAGCTCATCAGTTATTCATA ATGCACCTATCAAACCTTGAACTTTGGTCTTACTTACTTAAAATGGATGT CTGTGTTTATTGTATGGATATGCCATCAAATATAGAATATCTAACCCTGA TAAATTCAAACCCAAATCTCTTTGATGGAGTTTGTTACTGTCAACCTTGG TTTGTGTTAGTTAAGTTTCTAATCCCAGATTTTCATTGCATCCTTATTTA AGTTCTTCACGATTTGCTCTTAGCTATTTTGGATATTCAAACTCTGAATT TACAGATTTTGCCCGGGGGGACGGTATGTGAGGCAAAAAAAATGGCTTTT AGAATCGCACCCTTACAGTGCAGAAAAAATCGGTGAAATTCATACCCTTA CAGTGCATTTTTTCACATTTTAAACTCGTTTAGAGCATGAAAAGATTTTC GAGAAAAAATTAGCAATTTTTCCTAGATTTGCTGAAATTTTCACCCATAC AGTGCATTTATCAAAAGTCCACCCTTACAGTGCATTTCTGATATTTTGAA AAACATACCCTTAACCACCGCACATACCCGTCGGNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCACGAGA TTTTGCAGACAAAATAATTTACTATTCAGTCATTACCATTTCTGCATTTT GTTTAAGGAAGCCTATCAATTCTGCACCAAAGTTGGTTACCCAGTGCTGG TACGACCTTCATACGTGTTGAGTGGAGCTGCCATGAATGTTGTTTATGCT GAAGATGATTTAGAATCATATCTTGGATCTGCTGTCTCCATCTCTAAGGA GCATCCAGTTGTCATCTCCAAATTTATATCCAATGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000986XLOC_000986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001906-exon-sc0000012-1575043694:107947..108097TCONS_00001906-exon-sc0000012-1575043694:107947..108097Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1575043694:107479..107700TCONS_00001906-exon-sc0000012-1575043694:107479..107700Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1575043694:106941..107129TCONS_00001906-exon-sc0000012-1575043694:106941..107129Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1575043694:106357..106590TCONS_00001906-exon-sc0000012-1575043694:106357..106590Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1575043694:105977..106114TCONS_00001906-exon-sc0000012-1575043694:105977..106114Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1575043694:105379..105546TCONS_00001906-exon-sc0000012-1575043694:105379..105546Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1575043694:103868..103962TCONS_00001906-exon-sc0000012-1575043694:103868..103962Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1575043694:103332..103584TCONS_00001906-exon-sc0000012-1575043694:103332..103584Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1575043694:103000..103098TCONS_00001906-exon-sc0000012-1575043694:103000..103098Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1575043694:102698..102799TCONS_00001906-exon-sc0000012-1575043694:102698..102799Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1575043694:102011..102108TCONS_00001906-exon-sc0000012-1575043694:102011..102108Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1575043694:101170..101194TCONS_00001906-exon-sc0000012-1575043694:101170..101194Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1575043694:100209..100390TCONS_00001906-exon-sc0000012-1575043694:100209..100390Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1510915933:107947..108097TCONS_00001906-exon-sc0000012-1510915933:107947..108097Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1510915933:107479..107700TCONS_00001906-exon-sc0000012-1510915933:107479..107700Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1510915933:106941..107129TCONS_00001906-exon-sc0000012-1510915933:106941..107129Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1510915933:106357..106590TCONS_00001906-exon-sc0000012-1510915933:106357..106590Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1510915933:105977..106114TCONS_00001906-exon-sc0000012-1510915933:105977..106114Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1510915933:105379..105546TCONS_00001906-exon-sc0000012-1510915933:105379..105546Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1510915933:103868..103962TCONS_00001906-exon-sc0000012-1510915933:103868..103962Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1510915933:103332..103584TCONS_00001906-exon-sc0000012-1510915933:103332..103584Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1510915933:103000..103098TCONS_00001906-exon-sc0000012-1510915933:103000..103098Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1510915933:102698..102799TCONS_00001906-exon-sc0000012-1510915933:102698..102799Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1510915933:102011..102108TCONS_00001906-exon-sc0000012-1510915933:102011..102108Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1510915933:101170..101194TCONS_00001906-exon-sc0000012-1510915933:101170..101194Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1510915933:100209..100390TCONS_00001906-exon-sc0000012-1510915933:100209..100390Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1491911889:107947..108097TCONS_00001906-exon-sc0000012-1491911889:107947..108097Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1491911889:107479..107700TCONS_00001906-exon-sc0000012-1491911889:107479..107700Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1491911889:106941..107129TCONS_00001906-exon-sc0000012-1491911889:106941..107129Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1491911889:106357..106590TCONS_00001906-exon-sc0000012-1491911889:106357..106590Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1491911889:105977..106114TCONS_00001906-exon-sc0000012-1491911889:105977..106114Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1491911889:105379..105546TCONS_00001906-exon-sc0000012-1491911889:105379..105546Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1491911889:103868..103962TCONS_00001906-exon-sc0000012-1491911889:103868..103962Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1491911889:103332..103584TCONS_00001906-exon-sc0000012-1491911889:103332..103584Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1491911889:103000..103098TCONS_00001906-exon-sc0000012-1491911889:103000..103098Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1491911889:102698..102799TCONS_00001906-exon-sc0000012-1491911889:102698..102799Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1491911889:102011..102108TCONS_00001906-exon-sc0000012-1491911889:102011..102108Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1491911889:101170..101194TCONS_00001906-exon-sc0000012-1491911889:101170..101194Clytia hemisphaericaexon
TCONS_00001906-exon-sc0000012-1491911889:100209..100390TCONS_00001906-exon-sc0000012-1491911889:100209..100390Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:100209..108097 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00728264 0 0 0 0 0 0 0 0 1.4571e-05 0 1.4365e-06 0 1.22826 5.61114e-08 0 0.000964749 0 0.00621809 0 0.00175939 0.00117895 1.7105e-09 0 0 0 0 0.000619648 1.60457e-08 0
Blast
BLAST of TCONS_00001906 vs. Swiss-Prot (Human)
Match: PYR1 (CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3)

HSP 1 Score: 870.922 bits (2249), Expect = 0.000e+0
Identity = 448/650 (68.92%), Postives = 529/650 (81.38%), Query Frame = 2
Query:    5 GILEKYNVAVLGTPTKSIEWTEDRKMFSDKMGEIGEKVAPSSVAYTVDEAITAANRLGYPVXXXXXXXXXXXXXXXXXNDNELKKLAASAFAHSKQCLVDKSLKGWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGESIVVAPSQTLTNEEYNMLRRTAIKVIRKLGVVGECNIQYALHPDSKEFYIIEVNXXXXXXXXXXXXXTGYPLAYVAAKLALGIPLPKLRNSVTNSTTACFEPSLDYCVVKVPRWDLDKFQRVSTKIGSSMKSVGEVMAIGRSFEEAIQKSLRMVDDSNLGFDANNLELDEQVLVEPSDKRIFHVAAALRRGYSIDQLYELTRIDKWFLSKLAKIINYAKMLEEKYPKVGAGKDTIPCNILLKGKQLGFSDKQIANCVQSSELVIRKYRYECNILPCFKQIDTVAAEFPAEANYLYLTYNGDCDDVTYAESQNKVMVIGSGVYRIGSSVEFDACAVGCIRELKRLGKSTIMVNYNPETVSTDYDECDRLYFDEITFETIMDIYHKEDPEGIILSMGGQVANNIAMHLHRQEVRILGTSPEMIDNAENRFKFSRMLDNIGILQPTWKELTTMEEAYQFCTKVGYPVLVRPSYVLSGAAMNVVYAEDDLESYLGSAVSISKEHPVVISKFISNA 1954
            G+L +Y V VLGTP ++IE TEDR+ F+ +M EIGE VAPS  A ++++A  AA RLGYPVL+RAAFALGGLGSGFASN  EL  L A AFAH+ Q LVDKSLKGWKE+EYEVVRDAY NC+TVCNMEN DPLGIHTGESIVVAPSQTL + EY +LR+TAIKV + LG+VGECN+QYAL+P+S+++YIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLP+LRNSVT  T A FEPS+DYCVVK+PRWDL KF RVSTKIGS MKSVGEVM IGRSFEEA QK+LRMVD++ +GFD     + +  L  P+DKRIF VAAAL  GYS+D+LYELTRID+WFL ++ +II +A++LE+           +P ++L + K LGFSDKQIA  V S+EL +RK R E  I P  KQIDTVAAE+PA+ NYLYLTY G   D+T+      V+V+GSGVYRIGSSVEFD CAVGCI++L+++G  TIMVNYNPETVSTDYD CDRLYFDEI+FE +MDIY  E+PEG+ILSMGGQ+ NN+AM LHRQ+ R+LGTSPE ID+AENRFKFSR+LD IGI QP W+EL+ +E A QFC  VGYP +VRPSYVLSGAAMNV Y + DLE +L SA ++SKEHPVVISKFI  A
Sbjct:  492 GVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEAANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHTSQVLVDKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQTAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLPELRNSVTGGT-AAFEPSVDYCVVKIPRWDLSKFLRVSTKIGSCMKSVGEVMGIGRSFEEAFQKALRMVDENCVGFDHTVKPVSDMELETPTDKRIFVVAAALWAGYSVDRLYELTRIDRWFLHRMKRIIAHAQLLEQHR------GQPLPPDLLQQAKCLGFSDKQIALAVLSTELAVRKLRQELGICPAVKQIDTVAAEWPAQTNYLYLTYWGTTHDLTFRTPH--VLVLGSGVYRIGSSVEFDWCAVGCIQQLRKMGYKTIMVNYNPETVSTDYDMCDRLYFDEISFEVVMDIYELENPEGVILSMGGQLPNNMAMALHRQQCRVLGTSPEAIDSAENRFKFSRLLDTIGISQPQWRELSDLESARQFCQTVGYPCVVRPSYVLSGAAMNVAYTDGDLERFLSSAAAVSKEHPVVISKFIQEA 1132          

HSP 2 Score: 103.219 bits (256), Expect = 1.807e-22
Identity = 60/194 (30.93%), Postives = 97/194 (50.00%), Query Frame = 2
Query: 1355 NKVMVIGSGVYRIGSSVEFDACAVGCIRELKRLGKSTIMVNYNPETVSTDYDECDRLYFDEITFETIMDIYHKEDPEGIILSMGGQVANNIAMH------LHRQEVRILGTSPEMIDNAENRFKFSRMLDNIGILQPTWKELTTMEEAYQFCTKVGYPVLVRPSYVLSGAAMNVVYAEDDLESYLGSAVSISKE 1918
             KV+++GSG   IG + EFD      I+ LK     T+++N N  TV T     D++YF  IT   +  +   E P+G++L+ GGQ A N  +       L R  VR+LGT  E I+  E+R  F+  +  IG      +   ++E+A     ++GYPVLVR ++ L G         ++L + +  A + + +
Sbjct:  394 RKVLILGSGGLSIGQAGEFDYSGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLLTFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEAANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHTSQ 587          
The following BLAST results are available for this feature:
BLAST of TCONS_00001906 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PYR11.807e-2268.92CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3[more]
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