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TCONS_00001905 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001905
Unique NameTCONS_00001905
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1943

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001905 ID=TCONS_00001905|Name=TCONS_00001905|organism=Clytia hemisphaerica|type=transcript|length=1943bp
GAGAAATACAATGTTGCTGTTCTTGGTACACCTACCAAATCGATTGAATG
GACAGAAGATAGGAAAATGTTTTCAGACAAGATGGGAGAGATTGGTGAGA
AAGTTGCACCAAGCTCAGTGGCTTATACTGTGGATGAGGCTATCACAGCA
GCTAACAGGCTAGGATATCCAGTGTTGTTACGTGCAGCATTTGCACTAGG
TGGACTTGGATCTGGTTTTGCTTCCAATGACAATGAGCTCAAAAAGCTTG
CAGCATCGGCTTTTGCACATTCCAAACAGTGTCTAGTTGACAAGTCACTG
AAAGGATGGAAAGAAGTTGAATATGAAGTTGTTAGAGATGCTTATGACAA
CTGTATCACTGTTTGTAATATGGAAAACTTTGACCCTTTGGGAATCCATA
CGGGTGAATCAATTGTTGTTGCACCAAGTCAAACACTAACAAATGAGGAA
TACAATATGCTTAGAAGAACAGCCATCAAAGTCATCCGTAAACTTGGTGT
TGTTGGTGAATGTAACATCCAGTATGCTTTACACCCTGACTCAAAAGAGT
TCTACATCATTGAGGTCAATGCTCGTCTCTCCAGAAGTTCAGCTCTTGCT
TCCAAAGCAACTGGATACCCATTGGCTTACGTTGCTGCTAAACTTGCACT
TGGTATTCCTCTACCAAAACTGAGAAATTCTGTCACCAATTCAACTACCG
CTTGTTTTGAGCCCTCTTTGGATTATTGTGTTGTGAAAGTTCCTCGATGG
GATCTGGACAAATTTCAGAGGGTTTCAACAAAGATTGGATCTTCGATGAA
GAGTGTTGGTGAAGTAATGGCTATTGGAAGAAGTTTTGAGGAAGCCATTC
AAAAGAGTTTGAGAATGGTTGACGATTCAAACCTTGGTTTTGATGCAAAC
AACCTCGAGTTGGATGAACAGGTCTTAGTTGAGCCCTCTGACAAAAGAAT
CTTTCATGTTGCTGCTGCACTCCGTAGAGGATATTCTATTGATCAGCTGT
ATGAGCTCACTCGTATTGATAAGTGGTTTTTGAGCAAGCTAGCAAAAATA
ATCAACTATGCAAAAATGCTGGAAGAGAAATACCCAAAGGTTGGAGCTGG
AAAGGACACCATTCCATGCAATATCCTACTGAAGGGGAAGCAGCTTGGAT
TTTCAGATAAGCAAATTGCTAACTGCGTTCAAAGTTCTGAACTGGTTATC
CGCAAGTACCGTTATGAATGCAACATTTTGCCCTGTTTCAAGCAAATTGA
CACTGTTGCTGCAGAATTCCCAGCTGAAGCTAACTATCTGTATTTAACTT
ACAATGGAGattgtgatgacgtcacatacGCAGAAAGCCAAAACAAAGTC
ATGGTTATTGGGTCAGGTGTCTACAGAATCGGAAGCAGTGTTGAATTTGA
TGCATGTGCTGTTGGATGTATTCGAGAATTGAAGAGGCTTGGTAAGAGCA
CAATTATGGTGAATTACAATCCTGAAACTGTCAGTACAGACTATGATGAA
TGTGATCGATTGTACTTCGATGAAATCACATTTGAGACAATCATGGATAT
CTACCATAAAGAAGACCCAGAAGGTATTATCTTATCAATGGGAGGACAGG
TTGCCAACAACATTGCTATGCATCTCCACAGACAGGAAGTGAGGATCCTT
GGCACATCGCCAGAAATGATTGACAACGCTGAAAACAGATTCAAATTCTC
TCGTATGCTAGACAACATTGGAATCCTACAACCAACATGGAAAGAGTTGA
CCACGATGGAGGAAGCCTATCAATTCTGCACCAAAGTTGGTTACCCAGTG
CTGGTACGACCTTCATACGTGTTGAGTGGAGCTGCCATGAATGTTGTTTA
TGCTGAAGATGATTTAGAATCATATCTTGGATCTGCTGTCTCCATCTCTA
AGGAGCATCCAGTTGTCATCTCCAAATTTATATCCAATGCTAA
Run BLAST on NCBI

transcript from alignment at sc0000012:100209..108084-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001905 ID=TCONS_00001905|Name=TCONS_00001905|organism=Clytia hemisphaerica|type=transcript|length=7876bp|location=Sequence derived from alignment at sc0000012:100209..108084- (Clytia hemisphaerica)
GAGAAATACAATGTTGCTGTTCTTGGTACACCTACCAAATCGATTGAATG GACAGAAGATAGGAAAATGTTTTCAGACAAGATGGGAGAGATTGGTGAGA AAGTTGCACCAAGCTCAGTGGCTTATACTGTGGATGAGGTGAGTAATTTC TTTTGAAAAAAATAGAAAAAATAGTTATTCATAATTTCTTATGTTTGCTT TATAAAAAAATTCAAAGGTTGCATTTTTTGGTTCTCAGAAAGTCTCCTTC TTATAAAAATATAGTTGATTCAATGATCCTCACTCTCTGATCCACAGCCA AGCCACCAGTTGAGCATGCTCAATTCAGTTGCTTACTATAGAAATATGCT CTTGGTTTTCATATGCTTTTCATTATATTTTTAGGCTATCACAGCAGCTA ACAGGCTAGGATATCCAGTGTTGTTACGTGCAGCATTTGCACTAGGTGGA CTTGGATCTGGTTTTGCTTCCAATGACAATGAGCTCAAAAAGCTTGCAGC ATCGGCTTTTGCACATTCCAAACAGTGTCTAGTTGACAAGTCACTGAAAG GATGGAAAGAAGTTGAATATGAAGTTGTTAGAGATGCTTATGACAACTGT ATCACTGTAAGTTATTCTTTTGAAGGAGTTTCAATTAGTTATTCTATTCT ATTCTTTGTCTGTAAACAGCGTTTGTCTTTTGGAAATTAATGCATTCTTT TAGGAAGTATATTCGTAATAATTTCAATAGTGGGCTTCCCCATTTTTGAT TTTCTGCTTTTTGAAAAAAGGTTCGGGTTGGAGGTGGTGATGTCCCAATT TAAATATTCTGCCCAAACAAAATAAGTTTACAATACGAATTTGAAGATGA TGCCCATAATTTGTGAAATATCTTAGGAAGGGTATATTCTCTGTTACTTA AAAGCCCTCAGCTTTAAACTTGTGTTTGATTACAAATAAGCTATATGTTT TCCAGGTTTGTAATATGGAAAACTTTGACCCTTTGGGAATCCATACGGGT GAATCAATTGTTGTTGCACCAAGTCAAACACTAACAAATGAGGAATACAA TATGCTTAGAAGAACAGCCATCAAAGTCATCCGTAAACTTGGTGTTGTTG GTGAATGTAACATCCAGTATGCTTTACACCCTGACTCAAAAGAGGTACAA GTACTTGACCACTTGAGCAGACTGGAACACTTTTACCCCTTTACCCCAAT GAAACCTTCTTTTATACATTTGCTTGTTACAGCATCTCAAAAAGACTTGT TTTGTGGTGACTCAATTTTCCTTTCTTTGTCTTTATTTTGTTCAATTTCT TCAATCCCAGAAGAGAAACACTTGCTGATTATCAATTTATCTTTATTTGT TTTTGTCAATCAGACTTTGATTAGACACTTAGACACAAAAACCTTTTGCA TCATTGGTAAATGAATTTCTAATTTTTGGTTTTGAAACAAAGAATTAAAG CATAATATTTCTGAATCTTAATATTGCATCAACCTTTTTTATAGTTCTAC ATCATTGAGGTCAATGCTCGTCTCTCCAGAAGTTCAGCTCTTGCTTCCAA AGCAACTGGATACCCATTGGCTTACGTTGCTGCTAAACTTGCACTTGGTA TTCCTCTACCAAAACTGAGAAATTCTGTCACCAATTCAACTACCGCTTGT TTTGAGCCCTCTTTGGATTATTGTGTTGTGAAAGTTCCTCGATGGGATCT GGACAAATTTCAGAGGGTTTCAACAAAGGTGATTTGATTGTTTTGATATC GTGTACCAAAATCCATATTATATGAAAGGAGATTTGTTTTTGACTGAACC AGTAGTTGATTAACATCCAATGCATATGGAAAAGTTTGACAGTTGATATA GATCTATTCTGGTTAAACCAAAGCCAAAATTGTAGCAGCCTTTCGATTTA TAAATTTATCTTGGAATCAGGTGTGAAGTTTTGTACCTTTTTCTTTTCTA ATGCCATTTGTGTTTTTTAGATTGGATCTTCGATGAAGAGTGTTGGTGAA GTAATGGCTATTGGAAGAAGTTTTGAGGAAGCCATTCAAAAGAGTTTGAG AATGGTTGACGATTCAAACCTTGGTTTTGATGCAAACAACCTCGAGTTGG ATGAACAGGTATCTCCTGAAGTTTATCAGTCAATTTCTTTTTTAGTCTAT TATATTACAGCTTAAAAACAGGCTTAATCTTTTTCTCACAAGATTCGAAC AAAATGTAAGAGTTGGTCCAATAAGGTTCTCCAGTGTCTGGTGCTTGTTA CCTAATCTAGGAAGATACCTTTTTCTTCGACTAATAGAAAAATCTTTACT GTAATTGTCACTACAATTTATCTTTTGAAAAAAAAATCACATAATGTATC CTTTAAAGCAGTTCTAGTTATTATACTTACCTTGCTTCAATTTTCGGTCA TTTGTTTCTCAATCAAAATTTGGTTAAATGCCTAGGTATCTAAAAATTAT CTGCAATGGTTTACAATGTGACGTTTCCAATGGAATATATATGATTGGAA GATTTATGATTAACTTGACTTTCTGCCAATTCTCTTAGGTCTTAGTTGAG CCCTCTGACAAAAGAATCTTTCATGTTGCTGCTGCACTCCGTAGAGGATA TTCTATTGATCAGCTGTATGAGCTCACTCGTATTGATAAGTGGTTTTTGA GCAAGCTAGCAAAAATAATCAACTATGCAAAAATGCTGGAAGAGAAATAC CCAAAGGTAAAAGTTTTTATGAAATTTGACTTTTTTGTCCTAGGTTCTCT GTAACTCTTCTTTTTTGGCAGGGTTTGGAAGCTTAGTTGAGTTTGTCTGC GGTCATTCATTATCATGATTTTAACAGAAAAAAACAGTATTTCGGAATAA AAGCAGGTAAACCAATTGCTTAATTTGGTTACTAACATAAGCTGAAAATG ATTTTCTTCTTCAGAAAATCACGATAAATATTCTTTATTGTTTTTAGGTT GGAGCTGGAAAGGACACCATTCCATGCAATATCCTACTGAAGGGGAAGCA GCTTGGATTTTCAGATAAGCAAATTGCTAACTGCGTTCAAAGGTTGTGAC TTTATCTTTTAGATTTTACTACTTGACCATTTTATGTACTTAAACTTAGA TTGAGTCAGATTAATTAAATTTTCTAGACTTTACAAATAAAACTTCTTTA AAGAGTTCTTCAACGTCTTAGCCTAGTGAATCGGCGATGCCAGGATCAAA CCGCTACTTCATCTTCTTGCTCTACTCTGATAACCGAACTTAATACTCTG CAAAAGAGTAGTCCAAAGTGAGTGGATTATGAGTTCAACATTATGGAATG CAGACTAAGATTTATCAACTTGAACTTGAATGTTTTTCTCTTCAGTTCTG AACTGGTTATTCGCAAGTACCGTTATGAATGCAACATTTTGCCCTGTTTC AAGCAAATTGACACTGTTGCTGCAGAATTCCCAGCTGAAGCTAACTATCT GTATTTAACTTACAATGGAGATTGTGATGACGTCACATACGCAGAAAGCC AAAACAAAGTCATGGTTATTGGGTCAGGTGTCTACAGAATCGGAAGCAGT GTTGAATTTGATGCATGTGCTGTTGGATGTATTCGAGAATTGAAGAGGGT AAGTATAGAAATGATTCTTAAGTCAAATCAACTCAACGACTTAAGCTACC AAAATTACTTTGAAAAGTTCCTAAAGTTTGACCGAAGATATTCCTCCAAT GTTACTTGCTCTTGAGTAATTGACCGTGCATTCCCCTGTAATGTACATTG GGCTCCAGTCTTCCCCATCATATTTCTTGCAGTTACATTATTAGCTATTC AACTTTCCACCCTACATATTCTCTATTTCAGCTTGGTAAGAGCACAATTA TGGTGAATTACAATCCTGAAACTGTCAGTACAGACTATGATGAATGTGAT CGATTGTACTTCGATGAAATCACATTTGAGGTAATTCTTTATCAACCGAT AATTCAAATTGTCATTTTNTTCTGCGGTCATTCATTATCATGATTTTAAC AGAAAAAAACAGTATTTCGGAATAAAAGCAGGTAAACCAATAGCTTAATT TGGTTACTAACATAAGCTGAAAATGATTTTCTTCTTCAGAAAATCACGAT AAATATTCTTTATTGTTTTTAGGTTGGAGCTGGAAAGGACACCATTCCAT GCAATATCCTACTGAAGGGGAAGCAGCTTGGATTTTCAGATAAGCAAATT GCTAACTGCGTTCAAAGGTTGTGACTTTATCTTTAGACTTAGACTTAAAC TTAGATTGAGTCAGATTAATTAAATTTTCTAGACTTTACAAATAAAATTT CTTTAAAGAGTTCTTCAACGTCTTAGCCTAGTGAATCGGCGATGCCAGGA TCAAACCGCTACTTCATCTTCTTGCTCTACTCTGATAACCGAACTTAATA CGCTGCAAAAGAGTAGTCCAAAGTAAGTGGATTATGAGTTCAACATTATG GAATGCAGACTAAGATTTATCAACTTGAACTTGAATGTTTTTCTCTTCAG TTCTGAACTGGTTATCCGCAAGTACCGTTATGAATGCAACATTTTGCCCT GTTTCAAGCAAATTGACACTGTTGCTGCAGAATTCCCAGCTGAAGCTAAC TATCTGTATTTAACTTACAATGGAGATTGTGATGACGTCACATACGCAGA AAGCCAAAACAAAGTCATGGTTATTGGGTCAGGTGTCTACAGAATCGGAA GCAGTGTTGAATTTGATGCATGTGCTGTTGGATGTATTCGAGAATTGAAG AGGGTAAGTATAGAAATGATTCTTAAGTCAAATCAACTCAACGACTTAAG CTACCAAAATTACTTTGAAAAGTTCCTAAAGTTTGACCGAAGATATTCCT CCAATGTTACTTGCTCTTGAGTAATTGACCGTGCATTCCCCTGTAATGTA CATTGGGCTCCAGTCTTCCCCATCATATTTCTTGCAGTTACATTATTAGC TATTCAACTTTCCACCCTACATATTCTCTATTTCAGCTTGGTAAGAGCAC AATTATGGTGAATTACAATCCTGAAACTGTCAGTACAGACTATGATGAAT GTGATCGATTGTACTTCGATGAAATCACATTTGAGGTAATTCTTTATCAA CCGATAATTCAAATTGTCATTTTTCTGTTAACCCTGAAAGCTGACAAGGT ATTTGCTAATTTTAGTCCTAACTATTTCAAAGAGTCCCTGTGACTAATTC AACCTGCCTTCAAACCAAACAGATGACCTAAACAGATTGAACAGAACTTT AGAAATCATCAAAACACGACTTGTCTTTTTTCCAGACAATCATGGATATC TACCATAAAGAAGACCCAGAAGGTATTATCTTATCAATGGGAGGACAGGT TGCCAACAACATTGCTATGCATCTCCACAGACAGGAAGTAAGGCTTTAAC ATCTGAAAACATTTACCAGAGTTCAGAAATTATCCAAATAATATTCACAT TCCTCATGTTTACTTTAATCTTCTTGCTACCCCCAATGTTTGTTTATAAT TTGGAAAGTTCCCCTGGATGTTTGTCTATTTTTAAGAGTTTCCTTACAAT CTTCATGTAATTGTAATGGAAATGGTAATGTCTTGGAAAAATATTATGAC CAAAAACGTCATGTCATTTTTACTAAGATATTTGTTTTTCCATTAGGTGA GGATCCTTGGCACATCGCCAGAAATGATTGACAACGCTGAAAACAGATTC AAATTCTCTCGTATGCTAGACAACATTGGAATCCTACAACCAACATGGAA AGAGTTGACCACGATGGAGGTGAGCTCATCAGTTATTCATAATGCACCTA TCAAACCTTGAACTTTGGTCTTACTTACTTAAAATGGATGTCTGTGTTTA TTGCTTTTTATTGCTGATATGCCATCAAATACAGAATATCTAACCCTGAN AATATTATGGTCTTGGAAAAATATTATGACCAAAAACGTCACGTCATTTT TACTAAGATATTTGTTTTTCCATTAGGTGAGGATCCTTGGCACATCGCCA GAAATGATTGACAACGCTGAAAACAGATTCAAATTCTCTCGTATGCTAGA CAACATTGGAATCCTACAACCAACATGGAAAGAGTTGACCACGATGGAGG TGAGCTCATCAGTTATTCATAATGCACCTATCAAACCTTGAACTTTGGTC TTACTTACTTAAAATGGATGTCTGTGTTTATTGCTTTTNTGATCGATTGT ACTTCGATGAGATCACATTTGAGGTAATTCTTTATCAACCGATAATTCAA ATTGTCATTTTTCTGTTAACCCTGAAAGCTGACATGGTATTTGCTAATTT TAGTCCTAACTATTTCAAAGAGTCCCTGTGACTAATTCAACCTGCCTTCA AACCAAACAGATGACCTAAACAGATTGAACAGAACTTTAGAAATCATCAA AACACGACTTGTCTTTTTTCCAGACAATCATGGATATCTACCATAAAGAA GACCCAGAAGGTATTATCTTATCAATGGGAGGACAGGTTGCCAACAACAT TGCTATGCATCTCCACAGACAGGAAGTAAGGCTTTAACATCTGAAAACAT TTACCAGAGTTCAGAAATTATCCAAATAATATTCACATTCCTCATGTTTA CTTTAATCTTCTTGCTACCCCCAATGTTTGTTTATAATTTGGAAAGTTCC CCTGGATGTTTGTCTATTTTTAAGAGTTTCCTTACAATCTTCATGTAATT GTAATGGAAATGGTAAAATATTATGGTCTTGGAAAAATATTATGACCAAA AACGTCACGTCATTTTTACTAAGATATTTGTTTTTCCATTAGGTGAGGAT CCTTGGCACATCGCCAGAAATGATTGACAACGCTGAAAACAGATTCAAAT TCTCTCGTATGCTAGACAACATTGGAATCCTACAACCAACATGGAAAGAG TTGACCACGATGGAGGTGAGCTCATCAGTTATTCATAATGCACCTATCAA ACCTTGAACTTTGGTCTTACTTACTTAAAATGGATGTCTGTGTTTATTGT ATGGATATGCCATCAAATATAGAATATCTAACCCTGATAAATTCAAACCC AAATCTCTTTGATGGAGTTTGTTACTGTCAACCTTGGTTTGTGTTAGTTA AGTTTCTAATCCCAGATTTTCATTGCATCCTTATTTAAGTTCTTCACGAT TTGCTCTTAGCTATTTTGGATATTCAAACTCTGAATTTACAGATTTTGCC CGGGGGGACGGTATGTGAGGCAAAAAAAATGGCTTTTAGAATCGCACCCT TACAGTGCAGAAAAAATCGGTGAAATTCATACCCTTACAGTGCATTTTTT CACATTTTAAACTCGTTTAGAGCATGAAAAGATTTTCGAGAAAAAATTAG CAATTTTTCCTAGATTTGCTGAAATTTTCACCCATACAGTGCATTTATCA AAAGTCCACCCTTACAGTGCATTTCTGATATTTTGAAAAACATACCCTTA ACCACCGCACATACCCGTCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCACGAGATTTTGCAGACAAA ATAATTTACTATTCAGTCATTACCATTTCTGCATTTTGTTTAAGGAAGCC TATCAATTCTGCACCAAAGTTGGTTACCCAGTGCTGGTACGACCTTCATA CGTGTTGAGTGGAGCTGCCATGAATGTTGTTTATGCTGAAGATGATTTAG AATCATATCTTGGATCTGCTGTCTCCATCTCTAAGGAGCATCCAGTTGTC ATCTCCAAATTTATATCCAATGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000986XLOC_000986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001905-exon-sc0000012-1575043694:107947..108084TCONS_00001905-exon-sc0000012-1575043694:107947..108084Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1575043694:107479..107700TCONS_00001905-exon-sc0000012-1575043694:107479..107700Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1575043694:106941..107129TCONS_00001905-exon-sc0000012-1575043694:106941..107129Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1575043694:106357..106590TCONS_00001905-exon-sc0000012-1575043694:106357..106590Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1575043694:105977..106114TCONS_00001905-exon-sc0000012-1575043694:105977..106114Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1575043694:105379..105546TCONS_00001905-exon-sc0000012-1575043694:105379..105546Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1575043694:103868..103962TCONS_00001905-exon-sc0000012-1575043694:103868..103962Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1575043694:103332..103584TCONS_00001905-exon-sc0000012-1575043694:103332..103584Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1575043694:103000..103098TCONS_00001905-exon-sc0000012-1575043694:103000..103098Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1575043694:101560..101661TCONS_00001905-exon-sc0000012-1575043694:101560..101661Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1575043694:101170..101292TCONS_00001905-exon-sc0000012-1575043694:101170..101292Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1575043694:100209..100390TCONS_00001905-exon-sc0000012-1575043694:100209..100390Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1510915933:107947..108084TCONS_00001905-exon-sc0000012-1510915933:107947..108084Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1510915933:107479..107700TCONS_00001905-exon-sc0000012-1510915933:107479..107700Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1510915933:106941..107129TCONS_00001905-exon-sc0000012-1510915933:106941..107129Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1510915933:106357..106590TCONS_00001905-exon-sc0000012-1510915933:106357..106590Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1510915933:105977..106114TCONS_00001905-exon-sc0000012-1510915933:105977..106114Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1510915933:105379..105546TCONS_00001905-exon-sc0000012-1510915933:105379..105546Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1510915933:103868..103962TCONS_00001905-exon-sc0000012-1510915933:103868..103962Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1510915933:103332..103584TCONS_00001905-exon-sc0000012-1510915933:103332..103584Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1510915933:103000..103098TCONS_00001905-exon-sc0000012-1510915933:103000..103098Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1510915933:101560..101661TCONS_00001905-exon-sc0000012-1510915933:101560..101661Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1510915933:101170..101292TCONS_00001905-exon-sc0000012-1510915933:101170..101292Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1510915933:100209..100390TCONS_00001905-exon-sc0000012-1510915933:100209..100390Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1491911889:107947..108084TCONS_00001905-exon-sc0000012-1491911889:107947..108084Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1491911889:107479..107700TCONS_00001905-exon-sc0000012-1491911889:107479..107700Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1491911889:106941..107129TCONS_00001905-exon-sc0000012-1491911889:106941..107129Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1491911889:106357..106590TCONS_00001905-exon-sc0000012-1491911889:106357..106590Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1491911889:105977..106114TCONS_00001905-exon-sc0000012-1491911889:105977..106114Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1491911889:105379..105546TCONS_00001905-exon-sc0000012-1491911889:105379..105546Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1491911889:103868..103962TCONS_00001905-exon-sc0000012-1491911889:103868..103962Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1491911889:103332..103584TCONS_00001905-exon-sc0000012-1491911889:103332..103584Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1491911889:103000..103098TCONS_00001905-exon-sc0000012-1491911889:103000..103098Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1491911889:101560..101661TCONS_00001905-exon-sc0000012-1491911889:101560..101661Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1491911889:101170..101292TCONS_00001905-exon-sc0000012-1491911889:101170..101292Clytia hemisphaericaexon
TCONS_00001905-exon-sc0000012-1491911889:100209..100390TCONS_00001905-exon-sc0000012-1491911889:100209..100390Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:100209..108084 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.568747 0 0 0 0 0 0 0 0 0.000438705 0 7.84521e-06 0 0.0189275 1.23005e-06 0 0.0140536 0 0.103442 0 0.0250146 0.0173473 3.13822e-08 0 0 0 0 0.0801093 7.14234e-09 0
Blast
BLAST of TCONS_00001905 vs. Swiss-Prot (Human)
Match: PYR1 (CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3)

HSP 1 Score: 866.685 bits (2238), Expect = 0.000e+0
Identity = 446/646 (69.04%), Postives = 526/646 (81.42%), Query Frame = 1
Query:    4 KYNVAVLGTPTKSIEWTEDRKMFSDKMGEIGEKVAPSSVAYTVDEAITAANRLGYPVXXXXXXXXXXXXXXXXXNDNELKKLAASAFAHSKQCLVDKSLKGWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGESIVVAPSQTLTNEEYNMLRRTAIKVIRKLGVVGECNIQYALHPDSKEFYIIEVNXXXXXXXXXXXXXTGYPLAYVAAKLALGIPLPKLRNSVTNSTTACFEPSLDYCVVKVPRWDLDKFQRVSTKIGSSMKSVGEVMAIGRSFEEAIQKSLRMVDDSNLGFDANNLELDEQVLVEPSDKRIFHVAAALRRGYSIDQLYELTRIDKWFLSKLAKIINYAKMLEEKYPKVGAGKDTIPCNILLKGKQLGFSDKQIANCVQSSELVIRKYRYECNILPCFKQIDTVAAEFPAEANYLYLTYNGDCDDVTYAESQNKVMVIGSGVYRIGSSVEFDACAVGCIRELKRLGKSTIMVNYNPETVSTDYDECDRLYFDEITFETIMDIYHKEDPEGIILSMGGQVANNIAMHLHRQEVRILGTSPEMIDNAENRFKFSRMLDNIGILQPTWKELTTMEEAYQFCTKVGYPVLVRPSYVLSGAAMNVVYAEDDLESYLGSAVSISKEHPVVISKFISNA 1941
            +Y V VLGTP ++IE TEDR+ F+ +M EIGE VAPS  A ++++A  AA RLGYPVL+RAAFALGGLGSGFASN  EL  L A AFAH+ Q LVDKSLKGWKE+EYEVVRDAY NC+TVCNMEN DPLGIHTGESIVVAPSQTL + EY +LR+TAIKV + LG+VGECN+QYAL+P+S+++YIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLP+LRNSVT  T A FEPS+DYCVVK+PRWDL KF RVSTKIGS MKSVGEVM IGRSFEEA QK+LRMVD++ +GFD     + +  L  P+DKRIF VAAAL  GYS+D+LYELTRID+WFL ++ +II +A++LE+           +P ++L + K LGFSDKQIA  V S+EL +RK R E  I P  KQIDTVAAE+PA+ NYLYLTY G   D+T+      V+V+GSGVYRIGSSVEFD CAVGCI++L+++G  TIMVNYNPETVSTDYD CDRLYFDEI+FE +MDIY  E+PEG+ILSMGGQ+ NN+AM LHRQ+ R+LGTSPE ID+AENRFKFSR+LD IGI QP W+EL+ +E A QFC  VGYP +VRPSYVLSGAAMNV Y + DLE +L SA ++SKEHPVVISKFI  A
Sbjct:  496 RYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEAANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHTSQVLVDKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQTAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLPELRNSVTGGT-AAFEPSVDYCVVKIPRWDLSKFLRVSTKIGSCMKSVGEVMGIGRSFEEAFQKALRMVDENCVGFDHTVKPVSDMELETPTDKRIFVVAAALWAGYSVDRLYELTRIDRWFLHRMKRIIAHAQLLEQHR------GQPLPPDLLQQAKCLGFSDKQIALAVLSTELAVRKLRQELGICPAVKQIDTVAAEWPAQTNYLYLTYWGTTHDLTFRTPH--VLVLGSGVYRIGSSVEFDWCAVGCIQQLRKMGYKTIMVNYNPETVSTDYDMCDRLYFDEISFEVVMDIYELENPEGVILSMGGQLPNNMAMALHRQQCRVLGTSPEAIDSAENRFKFSRLLDTIGISQPQWRELSDLESARQFCQTVGYPCVVRPSYVLSGAAMNVAYTDGDLERFLSSAAAVSKEHPVVISKFIQEA 1132          

HSP 2 Score: 103.219 bits (256), Expect = 1.685e-22
Identity = 60/194 (30.93%), Postives = 97/194 (50.00%), Query Frame = 1
Query: 1342 NKVMVIGSGVYRIGSSVEFDACAVGCIRELKRLGKSTIMVNYNPETVSTDYDECDRLYFDEITFETIMDIYHKEDPEGIILSMGGQVANNIAMH------LHRQEVRILGTSPEMIDNAENRFKFSRMLDNIGILQPTWKELTTMEEAYQFCTKVGYPVLVRPSYVLSGAAMNVVYAEDDLESYLGSAVSISKE 1905
             KV+++GSG   IG + EFD      I+ LK     T+++N N  TV T     D++YF  IT   +  +   E P+G++L+ GGQ A N  +       L R  VR+LGT  E I+  E+R  F+  +  IG      +   ++E+A     ++GYPVLVR ++ L G         ++L + +  A + + +
Sbjct:  394 RKVLILGSGGLSIGQAGEFDYSGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLLTFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEAANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHTSQ 587          
The following BLAST results are available for this feature:
BLAST of TCONS_00001905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PYR11.685e-2269.04CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3[more]
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