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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001904 ID=TCONS_00001904|Name=TCONS_00001904|organism=Clytia hemisphaerica|type=transcript|length=501bp
TAAGAGCACAATTATGGTGAATTACAATCCTGAAACTGTCAGTACAGACT
ATGATGAATGTGATCGATTGTACTTCGATGAAATCACATTTGAGACAATC
ATGGATATCTACCATAAAGAAGACCCAGAAGGTATTATCTTATCAATGGG
AGGACAGGTTGCCAACAACATTGCTATGCATCTCCACAGACAGGAAGTGA
GGATCCTTGGCACATCGCCAGAAATGATTGACAACGCTGAAAACAGATTC
AAATTCTCTCGTATGCTAGACAACATTGGAATCCTACAACCAACATGGAA
AGAGTTGACCACGATGGAGGAAGCCTATCAATTCTGCACCAAAGTTGGTT
ACCCAGTGCTGGTACGACCTTCATACGTGTTGAGTGGAGCTGCCATGAAT
GTTGTTTATGCTGAAGATGATTTAGAATCATATCTTGGATCTGCTGTCTC
CATCTCTAAGGAGCATCCAGTTGTCATCTCCAAATTTATATCCAATGCTA
A Run BLAST on NCBI transcript from alignment at sc0000012:100209..104248- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001904 ID=TCONS_00001904|Name=TCONS_00001904|organism=Clytia hemisphaerica|type=transcript|length=4040bp|location=Sequence derived from alignment at sc0000012:100209..104248- (Clytia hemisphaerica)
TAAGAGCACAATTATGGTGAATTACAATCCTGAAACTGTCAGTACAGACT
ATGATGAATGTGATCGATTGTACTTCGATGAAATCACATTTGAGGTAATT
CTTTATCAACCGATAATTCAAATTGTCATTTTNTTCTGCGGTCATTCATT
ATCATGATTTTAACAGAAAAAAACAGTATTTCGGAATAAAAGCAGGTAAA
CCAATAGCTTAATTTGGTTACTAACATAAGCTGAAAATGATTTTCTTCTT
CAGAAAATCACGATAAATATTCTTTATTGTTTTTAGGTTGGAGCTGGAAA
GGACACCATTCCATGCAATATCCTACTGAAGGGGAAGCAGCTTGGATTTT
CAGATAAGCAAATTGCTAACTGCGTTCAAAGGTTGTGACTTTATCTTTAG
ACTTAGACTTAAACTTAGATTGAGTCAGATTAATTAAATTTTCTAGACTT
TACAAATAAAATTTCTTTAAAGAGTTCTTCAACGTCTTAGCCTAGTGAAT
CGGCGATGCCAGGATCAAACCGCTACTTCATCTTCTTGCTCTACTCTGAT
AACCGAACTTAATACGCTGCAAAAGAGTAGTCCAAAGTAAGTGGATTATG
AGTTCAACATTATGGAATGCAGACTAAGATTTATCAACTTGAACTTGAAT
GTTTTTCTCTTCAGTTCTGAACTGGTTATCCGCAAGTACCGTTATGAATG
CAACATTTTGCCCTGTTTCAAGCAAATTGACACTGTTGCTGCAGAATTCC
CAGCTGAAGCTAACTATCTGTATTTAACTTACAATGGAGATTGTGATGAC
GTCACATACGCAGAAAGCCAAAACAAAGTCATGGTTATTGGGTCAGGTGT
CTACAGAATCGGAAGCAGTGTTGAATTTGATGCATGTGCTGTTGGATGTA
TTCGAGAATTGAAGAGGGTAAGTATAGAAATGATTCTTAAGTCAAATCAA
CTCAACGACTTAAGCTACCAAAATTACTTTGAAAAGTTCCTAAAGTTTGA
CCGAAGATATTCCTCCAATGTTACTTGCTCTTGAGTAATTGACCGTGCAT
TCCCCTGTAATGTACATTGGGCTCCAGTCTTCCCCATCATATTTCTTGCA
GTTACATTATTAGCTATTCAACTTTCCACCCTACATATTCTCTATTTCAG
CTTGGTAAGAGCACAATTATGGTGAATTACAATCCTGAAACTGTCAGTAC
AGACTATGATGAATGTGATCGATTGTACTTCGATGAAATCACATTTGAGG
TAATTCTTTATCAACCGATAATTCAAATTGTCATTTTTCTGTTAACCCTG
AAAGCTGACAAGGTATTTGCTAATTTTAGTCCTAACTATTTCAAAGAGTC
CCTGTGACTAATTCAACCTGCCTTCAAACCAAACAGATGACCTAAACAGA
TTGAACAGAACTTTAGAAATCATCAAAACACGACTTGTCTTTTTTCCAGA
CAATCATGGATATCTACCATAAAGAAGACCCAGAAGGTATTATCTTATCA
ATGGGAGGACAGGTTGCCAACAACATTGCTATGCATCTCCACAGACAGGA
AGTAAGGCTTTAACATCTGAAAACATTTACCAGAGTTCAGAAATTATCCA
AATAATATTCACATTCCTCATGTTTACTTTAATCTTCTTGCTACCCCCAA
TGTTTGTTTATAATTTGGAAAGTTCCCCTGGATGTTTGTCTATTTTTAAG
AGTTTCCTTACAATCTTCATGTAATTGTAATGGAAATGGTAATGTCTTGG
AAAAATATTATGACCAAAAACGTCATGTCATTTTTACTAAGATATTTGTT
TTTCCATTAGGTGAGGATCCTTGGCACATCGCCAGAAATGATTGACAACG
CTGAAAACAGATTCAAATTCTCTCGTATGCTAGACAACATTGGAATCCTA
CAACCAACATGGAAAGAGTTGACCACGATGGAGGTGAGCTCATCAGTTAT
TCATAATGCACCTATCAAACCTTGAACTTTGGTCTTACTTACTTAAAATG
GATGTCTGTGTTTATTGCTTTTTATTGCTGATATGCCATCAAATACAGAA
TATCTAACCCTGANAATATTATGGTCTTGGAAAAATATTATGACCAAAAA
CGTCACGTCATTTTTACTAAGATATTTGTTTTTCCATTAGGTGAGGATCC
TTGGCACATCGCCAGAAATGATTGACAACGCTGAAAACAGATTCAAATTC
TCTCGTATGCTAGACAACATTGGAATCCTACAACCAACATGGAAAGAGTT
GACCACGATGGAGGTGAGCTCATCAGTTATTCATAATGCACCTATCAAAC
CTTGAACTTTGGTCTTACTTACTTAAAATGGATGTCTGTGTTTATTGCTT
TTNTGATCGATTGTACTTCGATGAGATCACATTTGAGGTAATTCTTTATC
AACCGATAATTCAAATTGTCATTTTTCTGTTAACCCTGAAAGCTGACATG
GTATTTGCTAATTTTAGTCCTAACTATTTCAAAGAGTCCCTGTGACTAAT
TCAACCTGCCTTCAAACCAAACAGATGACCTAAACAGATTGAACAGAACT
TTAGAAATCATCAAAACACGACTTGTCTTTTTTCCAGACAATCATGGATA
TCTACCATAAAGAAGACCCAGAAGGTATTATCTTATCAATGGGAGGACAG
GTTGCCAACAACATTGCTATGCATCTCCACAGACAGGAAGTAAGGCTTTA
ACATCTGAAAACATTTACCAGAGTTCAGAAATTATCCAAATAATATTCAC
ATTCCTCATGTTTACTTTAATCTTCTTGCTACCCCCAATGTTTGTTTATA
ATTTGGAAAGTTCCCCTGGATGTTTGTCTATTTTTAAGAGTTTCCTTACA
ATCTTCATGTAATTGTAATGGAAATGGTAAAATATTATGGTCTTGGAAAA
ATATTATGACCAAAAACGTCACGTCATTTTTACTAAGATATTTGTTTTTC
CATTAGGTGAGGATCCTTGGCACATCGCCAGAAATGATTGACAACGCTGA
AAACAGATTCAAATTCTCTCGTATGCTAGACAACATTGGAATCCTACAAC
CAACATGGAAAGAGTTGACCACGATGGAGGTGAGCTCATCAGTTATTCAT
AATGCACCTATCAAACCTTGAACTTTGGTCTTACTTACTTAAAATGGATG
TCTGTGTTTATTGTATGGATATGCCATCAAATATAGAATATCTAACCCTG
ATAAATTCAAACCCAAATCTCTTTGATGGAGTTTGTTACTGTCAACCTTG
GTTTGTGTTAGTTAAGTTTCTAATCCCAGATTTTCATTGCATCCTTATTT
AAGTTCTTCACGATTTGCTCTTAGCTATTTTGGATATTCAAACTCTGAAT
TTACAGATTTTGCCCGGGGGGACGGTATGTGAGGCAAAAAAAATGGCTTT
TAGAATCGCACCCTTACAGTGCAGAAAAAATCGGTGAAATTCATACCCTT
ACAGTGCATTTTTTCACATTTTAAACTCGTTTAGAGCATGAAAAGATTTT
CGAGAAAAAATTAGCAATTTTTCCTAGATTTGCTGAAATTTTCACCCATA
CAGTGCATTTATCAAAAGTCCACCCTTACAGTGCATTTCTGATATTTTGA
AAAACATACCCTTAACCACCGCACATACCCGTCGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCACGAG
ATTTTGCAGACAAAATAATTTACTATTCAGTCATTACCATTTCTGCATTT
TGTTTAAGGAAGCCTATCAATTCTGCACCAAAGTTGGTTACCCAGTGCTG
GTACGACCTTCATACGTGTTGAGTGGAGCTGCCATGAATGTTGTTTATGC
TGAAGATGATTTAGAATCATATCTTGGATCTGCTGTCTCCATCTCTAAGG
AGCATCCAGTTGTCATCTCCAAATTTATATCCAATGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001904-exon-sc0000012-1575043694:104155..104248 | TCONS_00001904-exon-sc0000012-1575043694:104155..104248 | Clytia hemisphaerica | exon |
| TCONS_00001904-exon-sc0000012-1575043694:102698..102799 | TCONS_00001904-exon-sc0000012-1575043694:102698..102799 | Clytia hemisphaerica | exon |
| TCONS_00001904-exon-sc0000012-1575043694:102316..102438 | TCONS_00001904-exon-sc0000012-1575043694:102316..102438 | Clytia hemisphaerica | exon |
| TCONS_00001904-exon-sc0000012-1575043694:100209..100390 | TCONS_00001904-exon-sc0000012-1575043694:100209..100390 | Clytia hemisphaerica | exon |
| TCONS_00001904-exon-sc0000012-1510915933:104155..104248 | TCONS_00001904-exon-sc0000012-1510915933:104155..104248 | Clytia hemisphaerica | exon |
| TCONS_00001904-exon-sc0000012-1510915933:102698..102799 | TCONS_00001904-exon-sc0000012-1510915933:102698..102799 | Clytia hemisphaerica | exon |
| TCONS_00001904-exon-sc0000012-1510915933:102316..102438 | TCONS_00001904-exon-sc0000012-1510915933:102316..102438 | Clytia hemisphaerica | exon |
| TCONS_00001904-exon-sc0000012-1510915933:100209..100390 | TCONS_00001904-exon-sc0000012-1510915933:100209..100390 | Clytia hemisphaerica | exon |
| TCONS_00001904-exon-sc0000012-1491911889:104155..104248 | TCONS_00001904-exon-sc0000012-1491911889:104155..104248 | Clytia hemisphaerica | exon |
| TCONS_00001904-exon-sc0000012-1491911889:102698..102799 | TCONS_00001904-exon-sc0000012-1491911889:102698..102799 | Clytia hemisphaerica | exon |
| TCONS_00001904-exon-sc0000012-1491911889:102316..102438 | TCONS_00001904-exon-sc0000012-1491911889:102316..102438 | Clytia hemisphaerica | exon |
| TCONS_00001904-exon-sc0000012-1491911889:100209..100390 | TCONS_00001904-exon-sc0000012-1491911889:100209..100390 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000012 | supercontig | sc0000012:100209..104248 - |
Blast
BLAST of TCONS_00001904 vs. Swiss-Prot (Human)
Match: PYR1 (CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3) HSP 1 Score: 268.855 bits (686), Expect = 1.543e-82 Identity = 121/164 (73.78%), Postives = 139/164 (84.76%), Query Frame = 2
Query: 8 TIMVNYNPETVSTDYDECDRLYFDEITFETIMDIYHKEDPEGIILSMGGQVANNIAMHLHRQEVRILGTSPEMIDNAENRFKFSRMLDNIGILQPTWKELTTMEEAYQFCTKVGYPVLVRPSYVLSGAAMNVVYAEDDLESYLGSAVSISKEHPVVISKFISNA 499
TIMVNYNPETVSTDYD CDRLYFDEI+FE +MDIY E+PEG+ILSMGGQ+ NN+AM LHRQ+ R+LGTSPE ID+AENRFKFSR+LD IGI QP W+EL+ +E A QFC VGYP +VRPSYVLSGAAMNV Y + DLE +L SA ++SKEHPVVISKFI A
Sbjct: 969 TIMVNYNPETVSTDYDMCDRLYFDEISFEVVMDIYELENPEGVILSMGGQLPNNMAMALHRQQCRVLGTSPEAIDSAENRFKFSRLLDTIGISQPQWRELSDLESARQFCQTVGYPCVVRPSYVLSGAAMNVAYTDGDLERFLSSAAAVSKEHPVVISKFIQEA 1132 HSP 2 Score: 82.8037 bits (203), Expect = 3.399e-18 Identity = 47/154 (30.52%), Postives = 77/154 (50.00%), Query Frame = 2
Query: 8 TIMVNYNPETVSTDYDECDRLYFDEITFETIMDIYHKEDPEGIILSMGGQVANNIAMHL------HRQEVRILGTSPEMIDNAENRFKFSRMLDNIGILQPTWKELTTMEEAYQFCTKVGYPVLVRPSYVLSGAAMNVVYAEDDLESYLGSAVS 451
T+++N N TV T D++YF IT + + E P+G++L+ GGQ A N + L R VR+LGT E I+ E+R F+ + IG + ++E+A ++GYPVLVR ++ L G ++L + + A +
Sbjct: 430 TLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLLTFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEAANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFA 583
The following BLAST results are available for this feature:
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