TCONS_00001880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001880
Unique NameTCONS_00001880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2868

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001880 ID=TCONS_00001880|Name=TCONS_00001880|organism=Clytia hemisphaerica|type=transcript|length=2868bp
GAAAGAGAGGGGAATTTTAGAGAAATACAATGTTGCTGTTCTTGGTACAC
CTACCAAATCGATTGAATGGACAGAAGATAGGAAAATGTTTTCAGACAAG
ATGGGAGAGATTGGTGAGAAAGTTGCACCAAGCTCAGTGGCTTATACTGT
GGATGAGGCTATCACAGCAGCTAACAGGCTAGGATATCCAGTGTTGTTAC
GTGCAGCATTTGCACTAGGTGGACTTGGATCTGGTTTTGCTTCCAATGAC
AATGAGCTCAAAAAGCTTGCAGCATCGGCTTTTGCACATTCCAAACAGTG
TCTAGTTGACAAGTCACTGAAAGGATGGAAAGAAGTTGAATATGAAGTTG
TTAGAGATGCTTATGACAACTGTATCACTGTTTGTAATATGGAAAACTTT
GACCCTTTGGGAATCCATACGGGTGAATCAATTGTTGTTGCACCAAGTCA
AACACTAACAAATGAGGAATACAATATGCTTAGAAGAACAGCCATCAAAG
TCATCCGTAAACTTGGTGTTGTTGGTGAATGTAACATCCAGTATGCTTTA
CACCCTGACTCAAAAGAGTTCTACATCATTGAGGTCAATGCTCGTCTCTC
CAGAAGTTCAGCTCTTGCTTCCAAAGCAACTGGATACCCATTGGCTTACG
TTGCTGCTAAACTTGCACTTGGTATTCCTCTACCAAAACTGAGAAATTCT
GTCACCAATTCAACTACCGCTTGTTTTGAGCCCTCTTTGGATTATTGTGT
TGTGAAAGTTCCTCGATGGGATCTGGACAAATTTCAGAGGGTTTCAACAA
AGATTGGATCTTCGATGAAGAGTGTTGGTGAAGTAATGGCTATTGGAAGA
AGTTTTGAGGAAGCCATTCAAAAGAGTTTGAGAATGGTTGACGATTCAAA
CCTTGGTTTTGATGCAAACAACCTCGAGTTGGATGAACAGGTCTTAGTTG
AGCCCTCTGACAAAAGAATCTTTCATGTTGCTGCTGCACTCCGTAGAGGA
TATTCTATTGATCAGCTGTATGAGCTCACTCGTATTGATAAGTGGTTTTT
GAGCAAGCTAGCAAAAATAATCAACTATGCAAAAATGCTGGAAGAGAAAT
ACCCAAAGGTTGGAGCTGGAAAGGACACCATTCCATGCAATATCCTACTG
AAGGGGAAGCAGCTTGGATTTTCAGATAAGCAAATTGCTAACTGCGTTCA
AAGTTCTGAACTGGTTATTCGCAAGTACCGTTATGAATGCAACATTTTGC
CCTGTTTCAAGCAAATTGACACTGTTGCTGCAGAATTCCCAGCTGAAGCT
AACTATCTGTATTTAACTTACAATGGAGattgtgatgacgtcacatacGC
AGAAAGCCAAAACAAAGTCATGGTTATTGGGTCAGGTGTCTACAGAATCG
GAAGCAGTGTTGAATTTGATGCATGTGCTGTTGGATGTATTCGAGAATTG
AAGAGGCTTGGTAAGAGCACAATTATGGTGAATTACAATCCTGAAACTGT
CAGTACAGACTATGATGAATGTGATCGATTGTACTTCGATGAAATCACAT
TTGAGACAATCATGGATATCTACCATAAAGAAGACCCAGAAGGTATTATC
TTATCAATGGGAGGACAGGTTGCCAACAACATTGCTATGCATCTCCACAG
ACAGGAAGTGAGGATCCTTGGCACATCGCCAGAAATGATTGACAACGCTG
AAAACAGATTCAAATTCTCTCGTATGCTAGACAACATTGGAATCCTACAA
CCAACATGGAAAGAGTTGACCACGATGGAGGAAGCCTATCAATTCTGCAC
CAAAGTTGGTTACCCAGTGCTGGTACGACCTTCATACGTGTTGAGTGGAG
CTGCCATGAATGTTGTTTATGCTGAAGATGATTTAGAATCATATCTTGGA
TCTGCTGTCTCCATCTCTAAGGAGCATCCAGTTGTCATCTCCAAATTTAT
ATCCAATGCTAAAGAAATTGACGTTGATGCCGTTGCCAACGACGGTGAAG
TGATGGCCATGGTCGTCTCTGAACACGTTGAAAACGCGGGTGTCCACTCT
GGTGACGCAACCATGATCTGTCCACCACAAGACATCAATACGGAAACCAT
GGGACGGATCAAACAGATCTGTATTGCAGTTGGAAACGCCCTCAATGTGT
CTGGTCCTTTCAATATGCAACTTATTGCTAAGGACAATCAATTGAAGGTG
ATCGAATGCAATTTACGGGTGTCTCGGTCCTTCCCTTTTGTTTCCAAAAC
TCTAGATTGTGATTTGGTTGCCTTGGCAACCAAAATCATCGTTGGTGCTC
CTGCTGAACCTGCATTCAACATTATGGATAAGTGTGAGAAGATCGGCTGT
AAGGTGccacaattttcattttcacgaCTTGCTGGAGCTGACGTTCAACT
TGGAGTAGAGATGGCAAGCACAGGAGAAGTAGCATGCTTCGGTGAAAATA
GATACGAAGCTTACTTGAAGGCCTTGATGAGCACAGGTTTCAAATTACCC
AAGAAAAACATACTGCTGACTGTTGGTAGTTATAAGGCGAAGAAAGAAAT
GTTGCCAAGTGTTCGTTTACTGGAGAAGATGGGATACGAATTGTATGCTA
GCATGGGTACCGGTGACTTCTATCAAGAACATGGTGTACAGGTCCAAATC
ATTGATTGGCCTTTCGAGGAGAATGGAACTGAGGGTCAGGAAGAGAGCAT
TCAAGACTACCTCACACAGAACAAATTTGATTTGGTCATCAACATTCCAA
TGAGGGGTAGTGGTACCAAGAAGAAGTCTCATTTCATCACACATGGATAT
CGCACCCGACGAATGGCCATCGATCATTCCGTCTCATTGATCACCAACAT
TAAGTGTGCCAAACTCTT
Run BLAST on NCBI

transcript from alignment at sc0000012:97205..108103-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001880 ID=TCONS_00001880|Name=TCONS_00001880|organism=Clytia hemisphaerica|type=transcript|length=10899bp|location=Sequence derived from alignment at sc0000012:97205..108103- (Clytia hemisphaerica)
GAAAGAGAGGGGAATTTTAGAGAAATACAATGTTGCTGTTCTTGGTACAC CTACCAAATCGATTGAATGGACAGAAGATAGGAAAATGTTTTCAGACAAG ATGGGAGAGATTGGTGAGAAAGTTGCACCAAGCTCAGTGGCTTATACTGT GGATGAGGTGAGTAATTTCTTTTGAAAAAAATAGAAAAAATAGTTATTCA TAATTTCTTATGTTTGCTTTATAAAAAAATTCAAAGGTTGCATTTTTTGG TTCTCAGAAAGTCTCCTTCTTATAAAAATATAGTTGATTCAATGATCCTC ACTCTCTGATCCACAGCCAAGCCACCAGTTGAGCATGCTCAATTCAGTTG CTTACTATAGAAATATGCTCTTGGTTTTCATATGCTTTTCATTATATTTT TAGGCTATCACAGCAGCTAACAGGCTAGGATATCCAGTGTTGTTACGTGC AGCATTTGCACTAGGTGGACTTGGATCTGGTTTTGCTTCCAATGACAATG AGCTCAAAAAGCTTGCAGCATCGGCTTTTGCACATTCCAAACAGTGTCTA GTTGACAAGTCACTGAAAGGATGGAAAGAAGTTGAATATGAAGTTGTTAG AGATGCTTATGACAACTGTATCACTGTAAGTTATTCTTTTGAAGGAGTTT CAATTAGTTATTCTATTCTATTCTTTGTCTGTAAACAGCGTTTGTCTTTT GGAAATTAATGCATTCTTTTAGGAAGTATATTCGTAATAATTTCAATAGT GGGCTTCCCCATTTTTGATTTTCTGCTTTTTGAAAAAAGGTTCGGGTTGG AGGTGGTGATGTCCCAATTTAAATATTCTGCCCAAACAAAATAAGTTTAC AATACGAATTTGAAGATGATGCCCATAATTTGTGAAATATCTTAGGAAGG GTATATTCTCTGTTACTTAAAAGCCCTCAGCTTTAAACTTGTGTTTGATT ACAAATAAGCTATATGTTTTCCAGGTTTGTAATATGGAAAACTTTGACCC TTTGGGAATCCATACGGGTGAATCAATTGTTGTTGCACCAAGTCAAACAC TAACAAATGAGGAATACAATATGCTTAGAAGAACAGCCATCAAAGTCATC CGTAAACTTGGTGTTGTTGGTGAATGTAACATCCAGTATGCTTTACACCC TGACTCAAAAGAGGTACAAGTACTTGACCACTTGAGCAGACTGGAACACT TTTACCCCTTTACCCCAATGAAACCTTCTTTTATACATTTGCTTGTTACA GCATCTCAAAAAGACTTGTTTTGTGGTGACTCAATTTTCCTTTCTTTGTC TTTATTTTGTTCAATTTCTTCAATCCCAGAAGAGAAACACTTGCTGATTA TCAATTTATCTTTATTTGTTTTTGTCAATCAGACTTTGATTAGACACTTA GACACAAAAACCTTTTGCATCATTGGTAAATGAATTTCTAATTTTTGGTT TTGAAACAAAGAATTAAAGCATAATATTTCTGAATCTTAATATTGCATCA ACCTTTTTTATAGTTCTACATCATTGAGGTCAATGCTCGTCTCTCCAGAA GTTCAGCTCTTGCTTCCAAAGCAACTGGATACCCATTGGCTTACGTTGCT GCTAAACTTGCACTTGGTATTCCTCTACCAAAACTGAGAAATTCTGTCAC CAATTCAACTACCGCTTGTTTTGAGCCCTCTTTGGATTATTGTGTTGTGA AAGTTCCTCGATGGGATCTGGACAAATTTCAGAGGGTTTCAACAAAGGTG ATTTGATTGTTTTGATATCGTGTACCAAAATCCATATTATATGAAAGGAG ATTTGTTTTTGACTGAACCAGTAGTTGATTAACATCCAATGCATATGGAA AAGTTTGACAGTTGATATAGATCTATTCTGGTTAAACCAAAGCCAAAATT GTAGCAGCCTTTCGATTTATAAATTTATCTTGGAATCAGGTGTGAAGTTT TGTACCTTTTTCTTTTCTAATGCCATTTGTGTTTTTTAGATTGGATCTTC GATGAAGAGTGTTGGTGAAGTAATGGCTATTGGAAGAAGTTTTGAGGAAG CCATTCAAAAGAGTTTGAGAATGGTTGACGATTCAAACCTTGGTTTTGAT GCAAACAACCTCGAGTTGGATGAACAGGTATCTCCTGAAGTTTATCAGTC AATTTCTTTTTTAGTCTATTATATTACAGCTTAAAAACAGGCTTAATCTT TTTCTCACAAGATTCGAACAAAATGTAAGAGTTGGTCCAATAAGGTTCTC CAGTGTCTGGTGCTTGTTACCTAATCTAGGAAGATACCTTTTTCTTCGAC TAATAGAAAAATCTTTACTGTAATTGTCACTACAATTTATCTTTTGAAAA AAAAATCACATAATGTATCCTTTAAAGCAGTTCTAGTTATTATACTTACC TTGCTTCAATTTTCGGTCATTTGTTTCTCAATCAAAATTTGGTTAAATGC CTAGGTATCTAAAAATTATCTGCAATGGTTTACAATGTGACGTTTCCAAT GGAATATATATGATTGGAAGATTTATGATTAACTTGACTTTCTGCCAATT CTCTTAGGTCTTAGTTGAGCCCTCTGACAAAAGAATCTTTCATGTTGCTG CTGCACTCCGTAGAGGATATTCTATTGATCAGCTGTATGAGCTCACTCGT ATTGATAAGTGGTTTTTGAGCAAGCTAGCAAAAATAATCAACTATGCAAA AATGCTGGAAGAGAAATACCCAAAGGTAAAAGTTTTTATGAAATTTGACT TTTTTGTCCTAGGTTCTCTGTAACTCTTCTTTTTTGGCAGGGTTTGGAAG CTTAGTTGAGTTTGTCTGCGGTCATTCATTATCATGATTTTAACAGAAAA AAACAGTATTTCGGAATAAAAGCAGGTAAACCAATTGCTTAATTTGGTTA CTAACATAAGCTGAAAATGATTTTCTTCTTCAGAAAATCACGATAAATAT TCTTTATTGTTTTTAGGTTGGAGCTGGAAAGGACACCATTCCATGCAATA TCCTACTGAAGGGGAAGCAGCTTGGATTTTCAGATAAGCAAATTGCTAAC TGCGTTCAAAGGTTGTGACTTTATCTTTTAGATTTTACTACTTGACCATT TTATGTACTTAAACTTAGATTGAGTCAGATTAATTAAATTTTCTAGACTT TACAAATAAAACTTCTTTAAAGAGTTCTTCAACGTCTTAGCCTAGTGAAT CGGCGATGCCAGGATCAAACCGCTACTTCATCTTCTTGCTCTACTCTGAT AACCGAACTTAATACTCTGCAAAAGAGTAGTCCAAAGTGAGTGGATTATG AGTTCAACATTATGGAATGCAGACTAAGATTTATCAACTTGAACTTGAAT GTTTTTCTCTTCAGTTCTGAACTGGTTATTCGCAAGTACCGTTATGAATG CAACATTTTGCCCTGTTTCAAGCAAATTGACACTGTTGCTGCAGAATTCC CAGCTGAAGCTAACTATCTGTATTTAACTTACAATGGAGATTGTGATGAC GTCACATACGCAGAAAGCCAAAACAAAGTCATGGTTATTGGGTCAGGTGT CTACAGAATCGGAAGCAGTGTTGAATTTGATGCATGTGCTGTTGGATGTA TTCGAGAATTGAAGAGGGTAAGTATAGAAATGATTCTTAAGTCAAATCAA CTCAACGACTTAAGCTACCAAAATTACTTTGAAAAGTTCCTAAAGTTTGA CCGAAGATATTCCTCCAATGTTACTTGCTCTTGAGTAATTGACCGTGCAT TCCCCTGTAATGTACATTGGGCTCCAGTCTTCCCCATCATATTTCTTGCA GTTACATTATTAGCTATTCAACTTTCCACCCTACATATTCTCTATTTCAG CTTGGTAAGAGCACAATTATGGTGAATTACAATCCTGAAACTGTCAGTAC AGACTATGATGAATGTGATCGATTGTACTTCGATGAAATCACATTTGAGG TAATTCTTTATCAACCGATAATTCAAATTGTCATTTTNTTCTGCGGTCAT TCATTATCATGATTTTAACAGAAAAAAACAGTATTTCGGAATAAAAGCAG GTAAACCAATAGCTTAATTTGGTTACTAACATAAGCTGAAAATGATTTTC TTCTTCAGAAAATCACGATAAATATTCTTTATTGTTTTTAGGTTGGAGCT GGAAAGGACACCATTCCATGCAATATCCTACTGAAGGGGAAGCAGCTTGG ATTTTCAGATAAGCAAATTGCTAACTGCGTTCAAAGGTTGTGACTTTATC TTTAGACTTAGACTTAAACTTAGATTGAGTCAGATTAATTAAATTTTCTA GACTTTACAAATAAAATTTCTTTAAAGAGTTCTTCAACGTCTTAGCCTAG TGAATCGGCGATGCCAGGATCAAACCGCTACTTCATCTTCTTGCTCTACT CTGATAACCGAACTTAATACGCTGCAAAAGAGTAGTCCAAAGTAAGTGGA TTATGAGTTCAACATTATGGAATGCAGACTAAGATTTATCAACTTGAACT TGAATGTTTTTCTCTTCAGTTCTGAACTGGTTATCCGCAAGTACCGTTAT GAATGCAACATTTTGCCCTGTTTCAAGCAAATTGACACTGTTGCTGCAGA ATTCCCAGCTGAAGCTAACTATCTGTATTTAACTTACAATGGAGATTGTG ATGACGTCACATACGCAGAAAGCCAAAACAAAGTCATGGTTATTGGGTCA GGTGTCTACAGAATCGGAAGCAGTGTTGAATTTGATGCATGTGCTGTTGG ATGTATTCGAGAATTGAAGAGGGTAAGTATAGAAATGATTCTTAAGTCAA ATCAACTCAACGACTTAAGCTACCAAAATTACTTTGAAAAGTTCCTAAAG TTTGACCGAAGATATTCCTCCAATGTTACTTGCTCTTGAGTAATTGACCG TGCATTCCCCTGTAATGTACATTGGGCTCCAGTCTTCCCCATCATATTTC TTGCAGTTACATTATTAGCTATTCAACTTTCCACCCTACATATTCTCTAT TTCAGCTTGGTAAGAGCACAATTATGGTGAATTACAATCCTGAAACTGTC AGTACAGACTATGATGAATGTGATCGATTGTACTTCGATGAAATCACATT TGAGGTAATTCTTTATCAACCGATAATTCAAATTGTCATTTTTCTGTTAA CCCTGAAAGCTGACAAGGTATTTGCTAATTTTAGTCCTAACTATTTCAAA GAGTCCCTGTGACTAATTCAACCTGCCTTCAAACCAAACAGATGACCTAA ACAGATTGAACAGAACTTTAGAAATCATCAAAACACGACTTGTCTTTTTT CCAGACAATCATGGATATCTACCATAAAGAAGACCCAGAAGGTATTATCT TATCAATGGGAGGACAGGTTGCCAACAACATTGCTATGCATCTCCACAGA CAGGAAGTAAGGCTTTAACATCTGAAAACATTTACCAGAGTTCAGAAATT ATCCAAATAATATTCACATTCCTCATGTTTACTTTAATCTTCTTGCTACC CCCAATGTTTGTTTATAATTTGGAAAGTTCCCCTGGATGTTTGTCTATTT TTAAGAGTTTCCTTACAATCTTCATGTAATTGTAATGGAAATGGTAATGT CTTGGAAAAATATTATGACCAAAAACGTCATGTCATTTTTACTAAGATAT TTGTTTTTCCATTAGGTGAGGATCCTTGGCACATCGCCAGAAATGATTGA CAACGCTGAAAACAGATTCAAATTCTCTCGTATGCTAGACAACATTGGAA TCCTACAACCAACATGGAAAGAGTTGACCACGATGGAGGTGAGCTCATCA GTTATTCATAATGCACCTATCAAACCTTGAACTTTGGTCTTACTTACTTA AAATGGATGTCTGTGTTTATTGCTTTTTATTGCTGATATGCCATCAAATA CAGAATATCTAACCCTGANAATATTATGGTCTTGGAAAAATATTATGACC AAAAACGTCACGTCATTTTTACTAAGATATTTGTTTTTCCATTAGGTGAG GATCCTTGGCACATCGCCAGAAATGATTGACAACGCTGAAAACAGATTCA AATTCTCTCGTATGCTAGACAACATTGGAATCCTACAACCAACATGGAAA GAGTTGACCACGATGGAGGTGAGCTCATCAGTTATTCATAATGCACCTAT CAAACCTTGAACTTTGGTCTTACTTACTTAAAATGGATGTCTGTGTTTAT TGCTTTTNTGATCGATTGTACTTCGATGAGATCACATTTGAGGTAATTCT TTATCAACCGATAATTCAAATTGTCATTTTTCTGTTAACCCTGAAAGCTG ACATGGTATTTGCTAATTTTAGTCCTAACTATTTCAAAGAGTCCCTGTGA CTAATTCAACCTGCCTTCAAACCAAACAGATGACCTAAACAGATTGAACA GAACTTTAGAAATCATCAAAACACGACTTGTCTTTTTTCCAGACAATCAT GGATATCTACCATAAAGAAGACCCAGAAGGTATTATCTTATCAATGGGAG GACAGGTTGCCAACAACATTGCTATGCATCTCCACAGACAGGAAGTAAGG CTTTAACATCTGAAAACATTTACCAGAGTTCAGAAATTATCCAAATAATA TTCACATTCCTCATGTTTACTTTAATCTTCTTGCTACCCCCAATGTTTGT TTATAATTTGGAAAGTTCCCCTGGATGTTTGTCTATTTTTAAGAGTTTCC TTACAATCTTCATGTAATTGTAATGGAAATGGTAAAATATTATGGTCTTG GAAAAATATTATGACCAAAAACGTCACGTCATTTTTACTAAGATATTTGT TTTTCCATTAGGTGAGGATCCTTGGCACATCGCCAGAAATGATTGACAAC GCTGAAAACAGATTCAAATTCTCTCGTATGCTAGACAACATTGGAATCCT ACAACCAACATGGAAAGAGTTGACCACGATGGAGGTGAGCTCATCAGTTA TTCATAATGCACCTATCAAACCTTGAACTTTGGTCTTACTTACTTAAAAT GGATGTCTGTGTTTATTGTATGGATATGCCATCAAATATAGAATATCTAA CCCTGATAAATTCAAACCCAAATCTCTTTGATGGAGTTTGTTACTGTCAA CCTTGGTTTGTGTTAGTTAAGTTTCTAATCCCAGATTTTCATTGCATCCT TATTTAAGTTCTTCACGATTTGCTCTTAGCTATTTTGGATATTCAAACTC TGAATTTACAGATTTTGCCCGGGGGGACGGTATGTGAGGCAAAAAAAATG GCTTTTAGAATCGCACCCTTACAGTGCAGAAAAAATCGGTGAAATTCATA CCCTTACAGTGCATTTTTTCACATTTTAAACTCGTTTAGAGCATGAAAAG ATTTTCGAGAAAAAATTAGCAATTTTTCCTAGATTTGCTGAAATTTTCAC CCATACAGTGCATTTATCAAAAGTCCACCCTTACAGTGCATTTCTGATAT TTTGAAAAACATACCCTTAACCACCGCACATACCCGTCGGNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCC ACGAGATTTTGCAGACAAAATAATTTACTATTCAGTCATTACCATTTCTG CATTTTGTTTAAGGAAGCCTATCAATTCTGCACCAAAGTTGGTTACCCAG TGCTGGTACGACCTTCATACGTGTTGAGTGGAGCTGCCATGAATGTTGTT TATGCTGAAGATGATTTAGAATCATATCTTGGATCTGCTGTCTCCATCTC TAAGGAGCATCCAGTTGTCATCTCCAAATTTATATCCAATGCTAAAGTAA CTGCAATTTATTCTACCTATAGTTCGTTTTGAATTGTTGATGTGGAAATA CCAATTTCTGCACAGATTTTTCGATAGGAAAAAAAAACAATCTGAATATT CAACAATGTTTTTTTTAAGTTTTCTTCTACAAACCGAAATAGTTCAATTC TTTGGTAAATGGTTACCCGAACTCTACGAGTCTATCTTCTTTGAATCTAG CTTTATTCTTAACCAGGAAATCTTAGTTACGTTTTTTGCAGTCGCACTTT GAATCCAGTCTGTGTAAAAGTTCCAACATCGTTTCTTAAAATCTACCCGA ACGCGACCGTAGTACAGTGGTAGAGCATCCGGCTGCGGTTCGCAAGGTTG TGGGTTCAACCCCCAGCCGGGTCATACCAAAGATTCCCAAAATGGTACTT GATGCCTCTCTGCTTGATGCTCAGCACNAATACCAATTTCTGCACAGATT TTTCGATAAGAAAAAAAAACAATCTGAATATTCAACAATGTTTTTTTTAA GTTTTCTTCTACAAACCGAAATAGTTCAATTCTTTGGTAAATGGTTACCC GAACTCTACGAGTCTATCTTCTTTGAATCTAGCTTTATTCTTAACCAGGA AATCTTAGTTACGTTTTTTGCAGTCGCACTTTGAATCCAGTCTGTGTAAA AGTTCCAACATCGTTTCTTAAAATCTACCCGAACGCTACCAACTTACAAT TACTTAATCGATTTCTTTCAACCAGGAAATTGACGTTGATGCCGTTGCCA ACGACGGTGAAGTGATGGCCATGGTCGTCTCTGAACACGTTGAAAACGCG GGTGTCCACTCTGGTGACGCAACCATGATCTGTCCACCACAAGACATCAA TACGGAAACCATGGGACGGATCAAACAGATCTGTATTGCAGTTGGAAACG CCCTCAATGTGTCTGGTCCTTTCAATATGCAACTTATTGCTAAGGTATAA AGTCTGTTCATCTCTATACTTTCAATTAATTTGACACTTTGTAGAATAGT GAATTCAAAGTACTCCTTGACGACGTATAGAGAAAGGAAAACTTGCGTTC TTCCAATACGCCTAATTACTTTTACACCACTATCACGTCTCCTGTGTCAA AAAAACGTAATGTTTTTGTGAGTACGTCAACTTCATTATTTTTATGAGAA TCTAAAGAACGGGAAATTCTCCTTCGGTAATGGTATGCTATTTTACCAAG GCAAGGAATACACAACATCTCATGGATCTTCATTTACTCTTTTAGGACAA TCAATTGAAGGTGATCGAATGCAATTTACGGGTGTCTCGGTCCTTCCCTT TTGTTTCCAAAACTCTAGATTGTGATTTGGTTGCCTTGGCAACCAAAATC ATCGTTGGTGCTCCTGCTGAACCTGCATTCAACATTATGGATAAGTGTGA GAAGATCGGCTGTAAGGTATGAACAGAAATAAATATTCCTCCTTCAAAAG CAAATTTCAAGTTTAAATGATTGAAAAATTGGTCATATTTTTGTCCAGAA ATATTAACCGTCATTTTCTCCTGTAAGAGTCCACTTTTGTCAAACAGATA GCTGATTGTAGTCCGAATGCCTATACTCAAGTACTTTAGTATCACAACTA TTTGTCCGCTCGCCATACCTTCATAACTCAGAACCAAAAGCATCGAAGAA ATTTTACATATATTTTGGATTTATCTCTAAGGGGTATCTACATTTTCTTT TGAGCTTGAAAAGACGCATAGACACATAGTGGCTATGTTATAAATCAACC GGACAGTCCTGAAATTGAAATCAACTTTCTGTCTCTCTGCAGGTGCCACA ATTTTCATTTTCACGACTTGCTGGAGCTGACGTTCAACTTGGAGTAGAGA TGGCAAGCACAGGAGAAGTAGCATGCTTCGGTGAAAATAGATACGAAGCT TACTTGAAGGCCTTGATGAGCACAGGTTTCAAATTACCCAAGAAAAACAT ACTGCTGACTGTTGGTAGTTATAAGGTAATAATTCTTCATTTTATTTCAA TACAATTTAGTTTTTCTGGTGGTAATTCGTAGTGGTGAAATTTGTTTTTT AGATTTAAACTATCCACAAAAACTTTTATTCAGGCAGTCTTGACGCTCCA TTGTTCTCATTATCTCGAAATGAAAACAAAGTTTCATCCATTGAATTTAG AAGATTTTTAGGATCTTCAACATAATCAGCCTGTAGTATATAAACCAGAC TTCAAACAATTATGTTCACTACTTCCACACTCTCACCTTATCATTGATCT GGATTGTTTTAGGCGAAGAAAGAAATGTTGCCAAGTGTTCGTTTACTGGA GAAGATGGGATACGAATTGTATGCTAGCATGGGTACCGGTGACTTCTATC AAGAACATGGTGTACAGGTCTGTCGAGTATCTTAGTTGAGGGCGTTGGTC TTTATTCTCTTAGCTTAGAGGTGTCAGCCTTTATTCTCTGAGCTAAGGAC ATTGGTTTCTCTGCTCTCTTAGCTAAACATGTTTGTCTCTGCTCTCCCTT AAAAGCCTTTATCAAAAGACATGGAATGTTTATGAATAAAATGTTATTAA AATAAGCGGGATCATTTTTGGGTACTTTGTTCGCTTTCATGATAAATTGT ATGTCCAGTAGCACAGAAGTCTTTATATTTCAGAGTTGAAAGTTAAGTTA CGAAGTTTCTTGTACATGAAATTAGGTTCTTTTTTTGAACTGTCTAACTC ATCCAACATTTCGTCAAATTAATTGGTTCTTGATTTCTACCGGACCAAAT AGCTTCGACATTTGTCTTTCAGGTCCAAATCATTGATTGGCCTTTCGAGG AGAATGGAACTGAGGGTCAGGAAGAGAGCATTCAAGACTACCTCACACAG AACAAATTTGATTTGGTCATCAACATTCCAATGAGGGGTAGTGGTACCAA GAAGAAGTCTCATTTCATCACACATGGATATCGCACCCGACGAATGGCCA TCGATCATTCCGTCTCATTGATCACCAACATTAAGTGTGCCAAACTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000986XLOC_000986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001880-exon-sc0000012-1575043694:107947..108103TCONS_00001880-exon-sc0000012-1575043694:107947..108103Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1575043694:107479..107700TCONS_00001880-exon-sc0000012-1575043694:107479..107700Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1575043694:106941..107129TCONS_00001880-exon-sc0000012-1575043694:106941..107129Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1575043694:106357..106590TCONS_00001880-exon-sc0000012-1575043694:106357..106590Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1575043694:105977..106114TCONS_00001880-exon-sc0000012-1575043694:105977..106114Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1575043694:105379..105546TCONS_00001880-exon-sc0000012-1575043694:105379..105546Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1575043694:105043..105137TCONS_00001880-exon-sc0000012-1575043694:105043..105137Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1575043694:104487..104739TCONS_00001880-exon-sc0000012-1575043694:104487..104739Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1575043694:104155..104253TCONS_00001880-exon-sc0000012-1575043694:104155..104253Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1575043694:102698..102799TCONS_00001880-exon-sc0000012-1575043694:102698..102799Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1575043694:101986..102108TCONS_00001880-exon-sc0000012-1575043694:101986..102108Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1575043694:100208..100390TCONS_00001880-exon-sc0000012-1575043694:100208..100390Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1575043694:99260..99478TCONS_00001880-exon-sc0000012-1575043694:99260..99478Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1575043694:98788..98958TCONS_00001880-exon-sc0000012-1575043694:98788..98958Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1575043694:98229..98411TCONS_00001880-exon-sc0000012-1575043694:98229..98411Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1575043694:97837..97941TCONS_00001880-exon-sc0000012-1575043694:97837..97941Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1575043694:97205..97431TCONS_00001880-exon-sc0000012-1575043694:97205..97431Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:107947..108103TCONS_00001880-exon-sc0000012-1510915933:107947..108103Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:107479..107700TCONS_00001880-exon-sc0000012-1510915933:107479..107700Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:106941..107129TCONS_00001880-exon-sc0000012-1510915933:106941..107129Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:106357..106590TCONS_00001880-exon-sc0000012-1510915933:106357..106590Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:105977..106114TCONS_00001880-exon-sc0000012-1510915933:105977..106114Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:105379..105546TCONS_00001880-exon-sc0000012-1510915933:105379..105546Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:105043..105137TCONS_00001880-exon-sc0000012-1510915933:105043..105137Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:104487..104739TCONS_00001880-exon-sc0000012-1510915933:104487..104739Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:104155..104253TCONS_00001880-exon-sc0000012-1510915933:104155..104253Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:102698..102799TCONS_00001880-exon-sc0000012-1510915933:102698..102799Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:101986..102108TCONS_00001880-exon-sc0000012-1510915933:101986..102108Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:100208..100390TCONS_00001880-exon-sc0000012-1510915933:100208..100390Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:99260..99478TCONS_00001880-exon-sc0000012-1510915933:99260..99478Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:98788..98958TCONS_00001880-exon-sc0000012-1510915933:98788..98958Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:98229..98411TCONS_00001880-exon-sc0000012-1510915933:98229..98411Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:97837..97941TCONS_00001880-exon-sc0000012-1510915933:97837..97941Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1510915933:97205..97431TCONS_00001880-exon-sc0000012-1510915933:97205..97431Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:107947..108103TCONS_00001880-exon-sc0000012-1491911889:107947..108103Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:107479..107700TCONS_00001880-exon-sc0000012-1491911889:107479..107700Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:106941..107129TCONS_00001880-exon-sc0000012-1491911889:106941..107129Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:106357..106590TCONS_00001880-exon-sc0000012-1491911889:106357..106590Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:105977..106114TCONS_00001880-exon-sc0000012-1491911889:105977..106114Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:105379..105546TCONS_00001880-exon-sc0000012-1491911889:105379..105546Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:105043..105137TCONS_00001880-exon-sc0000012-1491911889:105043..105137Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:104487..104739TCONS_00001880-exon-sc0000012-1491911889:104487..104739Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:104155..104253TCONS_00001880-exon-sc0000012-1491911889:104155..104253Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:102698..102799TCONS_00001880-exon-sc0000012-1491911889:102698..102799Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:101986..102108TCONS_00001880-exon-sc0000012-1491911889:101986..102108Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:100208..100390TCONS_00001880-exon-sc0000012-1491911889:100208..100390Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:99260..99478TCONS_00001880-exon-sc0000012-1491911889:99260..99478Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:98788..98958TCONS_00001880-exon-sc0000012-1491911889:98788..98958Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:98229..98411TCONS_00001880-exon-sc0000012-1491911889:98229..98411Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:97837..97941TCONS_00001880-exon-sc0000012-1491911889:97837..97941Clytia hemisphaericaexon
TCONS_00001880-exon-sc0000012-1491911889:97205..97431TCONS_00001880-exon-sc0000012-1491911889:97205..97431Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:97205..108103 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.314357 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.473792 0 1.50425e-09 0
Blast
BLAST of TCONS_00001880 vs. Swiss-Prot (Human)
Match: PYR1 (CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3)

HSP 1 Score: 1280.77 bits (3313), Expect = 0.000e+0
Identity = 651/954 (68.24%), Postives = 771/954 (80.82%), Query Frame = 2
Query:   11 GILEKYNVAVLGTPTKSIEWTEDRKMFSDKMGEIGEKVAPSSVAYTVDEAITAANRLGYPVXXXXXXXXXXXXXXXXXNDNELKKLAASAFAHSKQCLVDKSLKGWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGESIVVAPSQTLTNEEYNMLRRTAIKVIRKLGVVGECNIQYALHPDSKEFYIIEVNXXXXXXXXXXXXXTGYPLAYVAAKLALGIPLPKLRNSVTNSTTACFEPSLDYCVVKVPRWDLDKFQRVSTKIGSSMKSVGEVMAIGRSFEEAIQKSLRMVDDSNLGFDANNLELDEQVLVEPSDKRIFHVAAALRRGYSIDQLYELTRIDKWFLSKLAKIINYAKMLEEKYPKVGAGKDTIPCNILLKGKQLGFSDKQIANCVQSSELVIRKYRYECNILPCFKQIDTVAAEFPAEANYLYLTYNGDCDDVTYAESQNKVMVIGSGVYRIGSSVEFDACAVGCIRELKRLGKSTIMVNYNPETVSTDYDECDRLYFDEITFETIMDIYHKEDPEGIILSMGGQVANNIAMHLHRQEVRILGTSPEMIDNAENRFKFSRMLDNIGILQPTWKELTTMEEAYQFCTKVGYPVLVRPSYVLSGAAMNVVYAEDDLESYLGSAVSISKEHPVVISKFISNAKEIDVDAVANDGEVMAMVVSEHVENAGVHSGDATMICPPQDINTETMGRIKQICIAVGNALNVSGPFNMQLIAKDNQLKVIECNLRVSRSFPFVSKTLDCDLVALATKIIVGAPAEPAFNIMDKCEKIGCKVPQFSFSRLAGADVQLGVEMASTGEVACFGENRYEAYLKALMSTGFKLPKKNILLTVGSYKAKKEMLPSVRLLEKMGYELYASMGTGDFYQEHGVQVQIIDWPFEE--NGTEGQEESIQDYLTQNKFDLVINIPMRGSGTKKKSHFITHGYRTRRMAIDHSVSLITNIKCAKL 2866
            G+L +Y V VLGTP ++IE TEDR+ F+ +M EIGE VAPS  A ++++A  AA RLGYPVL+RAAFALGGLGSGFASN  EL  L A AFAH+ Q LVDKSLKGWKE+EYEVVRDAY NC+TVCNMEN DPLGIHTGESIVVAPSQTL + EY +LR+TAIKV + LG+VGECN+QYAL+P+S+++YIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLP+LRNSVT  T A FEPS+DYCVVK+PRWDL KF RVSTKIGS MKSVGEVM IGRSFEEA QK+LRMVD++ +GFD     + +  L  P+DKRIF VAAAL  GYS+D+LYELTRID+WFL ++ +II +A++LE+           +P ++L + K LGFSDKQIA  V S+EL +RK R E  I P  KQIDTVAAE+PA+ NYLYLTY G   D+T+      V+V+GSGVYRIGSSVEFD CAVGCI++L+++G  TIMVNYNPETVSTDYD CDRLYFDEI+FE +MDIY  E+PEG+ILSMGGQ+ NN+AM LHRQ+ R+LGTSPE ID+AENRFKFSR+LD IGI QP W+EL+ +E A QFC  VGYP +VRPSYVLSGAAMNV Y + DLE +L SA ++SKEHPVVISKFI  AKEIDVDAVA+DG V A+ +SEHVENAGVHSGDAT++ PPQDI  +T+ RIK I  AVG  L V+GPFN+QLIAKD+QLKVIECN+RVSRSFPFVSKTL  DLVALAT++I+G   EP   +M     +G KVPQFSFSRLAGADV LGVEM STGEVA FGE+R EAYLKA++STGFK+PKKNILLT+GSYK K E+LP+VRLLE +GY LYAS+GT DFY EHGV+V  +DW FEE  +G    + SI + L +  F+LVIN+ MRG+G ++ S F+T GYRTRR+A D SV LI +IKC KL
Sbjct:  492 GVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEAANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHTSQVLVDKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQTAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLPELRNSVTGGT-AAFEPSVDYCVVKIPRWDLSKFLRVSTKIGSCMKSVGEVMGIGRSFEEAFQKALRMVDENCVGFDHTVKPVSDMELETPTDKRIFVVAAALWAGYSVDRLYELTRIDRWFLHRMKRIIAHAQLLEQHR------GQPLPPDLLQQAKCLGFSDKQIALAVLSTELAVRKLRQELGICPAVKQIDTVAAEWPAQTNYLYLTYWGTTHDLTFRTPH--VLVLGSGVYRIGSSVEFDWCAVGCIQQLRKMGYKTIMVNYNPETVSTDYDMCDRLYFDEISFEVVMDIYELENPEGVILSMGGQLPNNMAMALHRQQCRVLGTSPEAIDSAENRFKFSRLLDTIGISQPQWRELSDLESARQFCQTVGYPCVVRPSYVLSGAAMNVAYTDGDLERFLSSAAAVSKEHPVVISKFIQEAKEIDVDAVASDGVVAAIAISEHVENAGVHSGDATLVTPPQDITAKTLERIKAIVHAVGQELQVTGPFNLQLIAKDDQLKVIECNVRVSRSFPFVSKTLGVDLVALATRVIMGEEVEPV-GLMTGSGVVGVKVPQFSFSRLAGADVVLGVEMTSTGEVAGFGESRCEAYLKAMLSTGFKIPKKNILLTIGSYKNKSELLPTVRLLESLGYSLYASLGTADFYTEHGVKVTAVDWHFEEAVDGECPPQRSILEQLAEKNFELVINLSMRGAGGRRLSSFVTKGYRTRRLAADFSVPLIIDIKCTKL 1435          

HSP 2 Score: 167.162 bits (422), Expect = 8.625e-42
Identity = 116/392 (29.59%), Postives = 190/392 (48.47%), Query Frame = 2
Query: 1361 NKVMVIGSGVYRIGSSVEFDACAVGCIRELKRLGKSTIMVNYNPETVSTDYDECDRLYFDEITFETIMDIYHKEDPEGIILSMGGQVANNIAMH------LHRQEVRILGTSPEMIDNAENRFKFSRMLDNIGILQPTWKELTTMEEAYQFCTKVGYPVLVRPSYVLSGAAMNVVYAEDDLESYLGSAVSISKEHPVVISKFISNAKEIDVDAVAND-GEVMAMVVSEHVENAGVHSGDATMICPPQDINTETMGRIKQICIAVGNALNVSGPFNMQ--LIAKDNQLKVIECNLRVSRSFPFVSKTLDCDLVALATKIIVGAP----------AEPAFNI-MDKCEKIGCKVPQFSFSRLAGADVQLGVEMASTGEVACFGENRYEAYLKAL 2476
             KV+++GSG   IG + EFD      I+ LK     T+++N N  TV T     D++YF  IT   +  +   E P+G++L+ GGQ A N  +       L R  VR+LGT  E I+  E+R  F+  +  IG      +   ++E+A     ++GYPVLVR ++ L G         ++L + +  A + + +  V++ K +   KEI+ + V +  G  + +   E+++  G+H+G++ ++ P Q +N      ++Q  I V   L + G  N+Q  L  +  Q  +IE N R+SRS    SK     L  +A K+ +G P             AF   +D C     K+P++  S+      ++G  M S GEV   G +  EA+ KAL
Sbjct:  394 RKVLILGSGGLSIGQAGEFDYSGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLLTFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEAANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHTSQ--VLVDKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQTAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLPELRNSVTGGTAAFEPSVDYCV---VKIPRWDLSKFLRVSTKIGSCMKSVGEVMGIGRSFEEAFQKAL 780          
The following BLAST results are available for this feature:
BLAST of TCONS_00001880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PYR18.625e-4268.24CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3[more]
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