TCONS_00001876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001876
Unique NameTCONS_00001876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2866

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001876 ID=TCONS_00001876|Name=TCONS_00001876|organism=Clytia hemisphaerica|type=transcript|length=2866bp
AAGAGAGGGGAATTTTAGAGAAATACAATGTTGCTGTTCTTGGTACACCT
ACCAAATCGATTGAATGGACAGAAGATAGGAAAATGTTTTCAGACAAGAT
GGGAGAGATTGGTGAGAAAGTTGCACCAAGCTCAGTGGCTTATACTGTGG
ATGAGGCTATCACAGCAGCTAACAGGCTAGGATATCCAGTGTTGTTACGT
GCAGCATTTGCACTAGGTGGACTTGGATCTGGTTTTGCTTCCAATGACAA
TGAGCTCAAAAAGCTTGCAGCATCGGCTTTTGCACATTCCAAACAGTGTC
TAGTTGACAAGTCACTGAAAGGATGGAAAGAAGTTGAATATGAAGTTGTT
AGAGATGCTTATGACAACTGTATCACTGTTTGTAATATGGAAAACTTTGA
CCCTTTGGGAATCCATACGGGTGAATCAATTGTTGTTGCACCAAGTCAAA
CACTAACAAATGAGGAATACAATATGCTTAGAAGAACAGCCATCAAAGTC
ATCCGTAAACTTGGTGTTGTTGGTGAATGTAACATCCAGTATGCTTTACA
CCCTGACTCAAAAGAGTTCTACATCATTGAGGTCAATGCTCGTCTCTCCA
GAAGTTCAGCTCTTGCTTCCAAAGCAACTGGATACCCATTGGCTTACGTT
GCTGCTAAACTTGCACTTGGTATTCCTCTACCAAAACTGAGAAATTCTGT
CACCAATTCAACTACCGCTTGTTTTGAGCCCTCTTTGGATTATTGTGTTG
TGAAAGTTCCTCGATGGGATCTGGACAAATTTCAGAGGGTTTCAACAAAG
ATTGGATCTTCGATGAAGAGTGTTGGTGAAGTAATGGCTATTGGAAGAAG
TTTTGAGGAAGCCATTCAAAAGAGTTTGAGAATGGTTGACGATTCAAACC
TTGGTTTTGATGCAAACAACCTCGAGTTGGATGAACAGGTCTTAGTTGAG
CCCTCTGACAAAAGAATCTTTCATGTTGCTGCTGCACTCCGTAGAGGATA
TTCTATTGATCAGCTGTATGAGCTCACTCGTATTGATAAGTGGTTTTTGA
GCAAGCTAGCAAAAATAATCAACTATGCAAAAATGCTGGAAGAGAAATAC
CCAAAGGTTGGAGCTGGAAAGGACACCATTCCATGCAATATCCTACTGAA
GGGGAAGCAGCTTGGATTTTCAGATAAGCAAATTGCTAACTGCGTTCAAA
GTTCTGAACTGGTTATCCGCAAGTACCGTTATGAATGCAACATTTTGCCC
TGTTTCAAGCAAATTGACACTGTTGCTGCAGAATTCCCAGCTGAAGCTAA
CTATCTGTATTTAACTTACAATGGAGattgtgatgacgtcacatacGCAG
AAAGCCAAAACAAAGTCATGGTTATTGGGTCAGGTGTCTACAGAATCGGA
AGCAGTGTTGAATTTGATGCATGTGCTGTTGGATGTATTCGAGAATTGAA
GAGGCTTGGTAAGAGCACAATTATGGTGAATTACAATCCTGAAACTGTCA
GTACAGACTATGATGAATGTGATCGATTGTACTTCGATGAAATCACATTT
GAGACAATCATGGATATCTACCATAAAGAAGACCCAGAAGGTATTATCTT
ATCAATGGGAGGACAGGTTGCCAACAACATTGCTATGCATCTCCACAGAC
AGGAAGTGAGGATCCTTGGCACATCGCCAGAAATGATTGACAACGCTGAA
AACAGATTCAAATTCTCTCGTATGCTAGACAACATTGGAATCCTACAACC
AACATGGAAAGAGTTGACCACGATGGAGGAAGCCTATCAATTCTGCACCA
AAGTTGGTTACCCAGTGCTGGTACGACCTTCATACGTGTTGAGTGGAGCT
GCCATGAATGTTGTTTATGCTGAAGATGATTTAGAATCATATCTTGGATC
TGCTGTCTCCATCTCTAAGGAGCATCCAGTTGTCATCTCCAAATTTATAT
CCAATGCTAAAGAAATTGACGTTGATGCCGTTGCCAACGACGGTGAAGTG
ATGGCCATGGTCGTCTCTGAACACGTTGAAAACGCGGGTGTCCACTCTGG
TGACGCAACCATGATCTGTCCACCACAAGACATCAATACGGAAACCATGG
GACGGATCAAACAGATCTGTATTGCAGTTGGAAACGCCCTCAATGTGTCT
GGTCCTTTCAATATGCAACTTATTGCTAAGGACAATCAATTGAAGGTGAT
CGAATGCAATTTACGGGTGTCTCGGTCCTTCCCTTTTGTTTCCAAAACTC
TAGATTGTGATTTGGTTGCCTTGGCAACCAAAATCATCGTTGGTGCTCCT
GCTGAACCTGCATTCAACATTATGGATAAGTGTGAGAAGATCGGCTGTAA
GGTGccacaattttcattttcacgaCTTGCTGGAGCTGACGTTCAACTTG
GAGTAGAGATGGCAAGCACAGGAGAAGTAGCATGCTTCGGTGAAAATAGA
TACGAAGCTTACTTGAAGGCCTTGATGAGCACAGGTTTCAAATTACCCAA
GAAAAACATACTGCTGACTGTTGGTAGTTATAAGGCGAAGAAAGAAATGT
TGCCAAGTGTTCGTTTACTGGAGAAGATGGGATACGAATTGTATGCTAGC
ATGGGTACCGGTGACTTCTATCAAGAACATGGTGTACAGGTCCAAATCAT
TGATTGGCCTTTCGAGGAGAATGGAACTGAGGGTCAGGAAGAGAGCATTC
AAGACTACCTCACACAGAACAAATTTGATTTGGTCATCAACATTCCAATG
AGGGGTAGTGGTACCAAGAAGAAGTCTCATTTCATCACACATGGATATCG
CACCCGACGAATGGCCATCGATCATTCCGTCTCATTGATCACCAACATTA
AGTGTGCCAAACTCTT
Run BLAST on NCBI

transcript from alignment at sc0000012:97205..108101-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001876 ID=TCONS_00001876|Name=TCONS_00001876|organism=Clytia hemisphaerica|type=transcript|length=10897bp|location=Sequence derived from alignment at sc0000012:97205..108101- (Clytia hemisphaerica)
AAGAGAGGGGAATTTTAGAGAAATACAATGTTGCTGTTCTTGGTACACCT ACCAAATCGATTGAATGGACAGAAGATAGGAAAATGTTTTCAGACAAGAT GGGAGAGATTGGTGAGAAAGTTGCACCAAGCTCAGTGGCTTATACTGTGG ATGAGGTGAGTAATTTCTTTTGAAAAAAATAGAAAAAATAGTTATTCATA ATTTCTTATGTTTGCTTTATAAAAAAATTCAAAGGTTGCATTTTTTGGTT CTCAGAAAGTCTCCTTCTTATAAAAATATAGTTGATTCAATGATCCTCAC TCTCTGATCCACAGCCAAGCCACCAGTTGAGCATGCTCAATTCAGTTGCT TACTATAGAAATATGCTCTTGGTTTTCATATGCTTTTCATTATATTTTTA GGCTATCACAGCAGCTAACAGGCTAGGATATCCAGTGTTGTTACGTGCAG CATTTGCACTAGGTGGACTTGGATCTGGTTTTGCTTCCAATGACAATGAG CTCAAAAAGCTTGCAGCATCGGCTTTTGCACATTCCAAACAGTGTCTAGT TGACAAGTCACTGAAAGGATGGAAAGAAGTTGAATATGAAGTTGTTAGAG ATGCTTATGACAACTGTATCACTGTAAGTTATTCTTTTGAAGGAGTTTCA ATTAGTTATTCTATTCTATTCTTTGTCTGTAAACAGCGTTTGTCTTTTGG AAATTAATGCATTCTTTTAGGAAGTATATTCGTAATAATTTCAATAGTGG GCTTCCCCATTTTTGATTTTCTGCTTTTTGAAAAAAGGTTCGGGTTGGAG GTGGTGATGTCCCAATTTAAATATTCTGCCCAAACAAAATAAGTTTACAA TACGAATTTGAAGATGATGCCCATAATTTGTGAAATATCTTAGGAAGGGT ATATTCTCTGTTACTTAAAAGCCCTCAGCTTTAAACTTGTGTTTGATTAC AAATAAGCTATATGTTTTCCAGGTTTGTAATATGGAAAACTTTGACCCTT TGGGAATCCATACGGGTGAATCAATTGTTGTTGCACCAAGTCAAACACTA ACAAATGAGGAATACAATATGCTTAGAAGAACAGCCATCAAAGTCATCCG TAAACTTGGTGTTGTTGGTGAATGTAACATCCAGTATGCTTTACACCCTG ACTCAAAAGAGGTACAAGTACTTGACCACTTGAGCAGACTGGAACACTTT TACCCCTTTACCCCAATGAAACCTTCTTTTATACATTTGCTTGTTACAGC ATCTCAAAAAGACTTGTTTTGTGGTGACTCAATTTTCCTTTCTTTGTCTT TATTTTGTTCAATTTCTTCAATCCCAGAAGAGAAACACTTGCTGATTATC AATTTATCTTTATTTGTTTTTGTCAATCAGACTTTGATTAGACACTTAGA CACAAAAACCTTTTGCATCATTGGTAAATGAATTTCTAATTTTTGGTTTT GAAACAAAGAATTAAAGCATAATATTTCTGAATCTTAATATTGCATCAAC CTTTTTTATAGTTCTACATCATTGAGGTCAATGCTCGTCTCTCCAGAAGT TCAGCTCTTGCTTCCAAAGCAACTGGATACCCATTGGCTTACGTTGCTGC TAAACTTGCACTTGGTATTCCTCTACCAAAACTGAGAAATTCTGTCACCA ATTCAACTACCGCTTGTTTTGAGCCCTCTTTGGATTATTGTGTTGTGAAA GTTCCTCGATGGGATCTGGACAAATTTCAGAGGGTTTCAACAAAGGTGAT TTGATTGTTTTGATATCGTGTACCAAAATCCATATTATATGAAAGGAGAT TTGTTTTTGACTGAACCAGTAGTTGATTAACATCCAATGCATATGGAAAA GTTTGACAGTTGATATAGATCTATTCTGGTTAAACCAAAGCCAAAATTGT AGCAGCCTTTCGATTTATAAATTTATCTTGGAATCAGGTGTGAAGTTTTG TACCTTTTTCTTTTCTAATGCCATTTGTGTTTTTTAGATTGGATCTTCGA TGAAGAGTGTTGGTGAAGTAATGGCTATTGGAAGAAGTTTTGAGGAAGCC ATTCAAAAGAGTTTGAGAATGGTTGACGATTCAAACCTTGGTTTTGATGC AAACAACCTCGAGTTGGATGAACAGGTATCTCCTGAAGTTTATCAGTCAA TTTCTTTTTTAGTCTATTATATTACAGCTTAAAAACAGGCTTAATCTTTT TCTCACAAGATTCGAACAAAATGTAAGAGTTGGTCCAATAAGGTTCTCCA GTGTCTGGTGCTTGTTACCTAATCTAGGAAGATACCTTTTTCTTCGACTA ATAGAAAAATCTTTACTGTAATTGTCACTACAATTTATCTTTTGAAAAAA AAATCACATAATGTATCCTTTAAAGCAGTTCTAGTTATTATACTTACCTT GCTTCAATTTTCGGTCATTTGTTTCTCAATCAAAATTTGGTTAAATGCCT AGGTATCTAAAAATTATCTGCAATGGTTTACAATGTGACGTTTCCAATGG AATATATATGATTGGAAGATTTATGATTAACTTGACTTTCTGCCAATTCT CTTAGGTCTTAGTTGAGCCCTCTGACAAAAGAATCTTTCATGTTGCTGCT GCACTCCGTAGAGGATATTCTATTGATCAGCTGTATGAGCTCACTCGTAT TGATAAGTGGTTTTTGAGCAAGCTAGCAAAAATAATCAACTATGCAAAAA TGCTGGAAGAGAAATACCCAAAGGTAAAAGTTTTTATGAAATTTGACTTT TTTGTCCTAGGTTCTCTGTAACTCTTCTTTTTTGGCAGGGTTTGGAAGCT TAGTTGAGTTTGTCTGCGGTCATTCATTATCATGATTTTAACAGAAAAAA ACAGTATTTCGGAATAAAAGCAGGTAAACCAATTGCTTAATTTGGTTACT AACATAAGCTGAAAATGATTTTCTTCTTCAGAAAATCACGATAAATATTC TTTATTGTTTTTAGGTTGGAGCTGGAAAGGACACCATTCCATGCAATATC CTACTGAAGGGGAAGCAGCTTGGATTTTCAGATAAGCAAATTGCTAACTG CGTTCAAAGGTTGTGACTTTATCTTTTAGATTTTACTACTTGACCATTTT ATGTACTTAAACTTAGATTGAGTCAGATTAATTAAATTTTCTAGACTTTA CAAATAAAACTTCTTTAAAGAGTTCTTCAACGTCTTAGCCTAGTGAATCG GCGATGCCAGGATCAAACCGCTACTTCATCTTCTTGCTCTACTCTGATAA CCGAACTTAATACTCTGCAAAAGAGTAGTCCAAAGTGAGTGGATTATGAG TTCAACATTATGGAATGCAGACTAAGATTTATCAACTTGAACTTGAATGT TTTTCTCTTCAGTTCTGAACTGGTTATTCGCAAGTACCGTTATGAATGCA ACATTTTGCCCTGTTTCAAGCAAATTGACACTGTTGCTGCAGAATTCCCA GCTGAAGCTAACTATCTGTATTTAACTTACAATGGAGATTGTGATGACGT CACATACGCAGAAAGCCAAAACAAAGTCATGGTTATTGGGTCAGGTGTCT ACAGAATCGGAAGCAGTGTTGAATTTGATGCATGTGCTGTTGGATGTATT CGAGAATTGAAGAGGGTAAGTATAGAAATGATTCTTAAGTCAAATCAACT CAACGACTTAAGCTACCAAAATTACTTTGAAAAGTTCCTAAAGTTTGACC GAAGATATTCCTCCAATGTTACTTGCTCTTGAGTAATTGACCGTGCATTC CCCTGTAATGTACATTGGGCTCCAGTCTTCCCCATCATATTTCTTGCAGT TACATTATTAGCTATTCAACTTTCCACCCTACATATTCTCTATTTCAGCT TGGTAAGAGCACAATTATGGTGAATTACAATCCTGAAACTGTCAGTACAG ACTATGATGAATGTGATCGATTGTACTTCGATGAAATCACATTTGAGGTA ATTCTTTATCAACCGATAATTCAAATTGTCATTTTNTTCTGCGGTCATTC ATTATCATGATTTTAACAGAAAAAAACAGTATTTCGGAATAAAAGCAGGT AAACCAATAGCTTAATTTGGTTACTAACATAAGCTGAAAATGATTTTCTT CTTCAGAAAATCACGATAAATATTCTTTATTGTTTTTAGGTTGGAGCTGG AAAGGACACCATTCCATGCAATATCCTACTGAAGGGGAAGCAGCTTGGAT TTTCAGATAAGCAAATTGCTAACTGCGTTCAAAGGTTGTGACTTTATCTT TAGACTTAGACTTAAACTTAGATTGAGTCAGATTAATTAAATTTTCTAGA CTTTACAAATAAAATTTCTTTAAAGAGTTCTTCAACGTCTTAGCCTAGTG AATCGGCGATGCCAGGATCAAACCGCTACTTCATCTTCTTGCTCTACTCT GATAACCGAACTTAATACGCTGCAAAAGAGTAGTCCAAAGTAAGTGGATT ATGAGTTCAACATTATGGAATGCAGACTAAGATTTATCAACTTGAACTTG AATGTTTTTCTCTTCAGTTCTGAACTGGTTATCCGCAAGTACCGTTATGA ATGCAACATTTTGCCCTGTTTCAAGCAAATTGACACTGTTGCTGCAGAAT TCCCAGCTGAAGCTAACTATCTGTATTTAACTTACAATGGAGATTGTGAT GACGTCACATACGCAGAAAGCCAAAACAAAGTCATGGTTATTGGGTCAGG TGTCTACAGAATCGGAAGCAGTGTTGAATTTGATGCATGTGCTGTTGGAT GTATTCGAGAATTGAAGAGGGTAAGTATAGAAATGATTCTTAAGTCAAAT CAACTCAACGACTTAAGCTACCAAAATTACTTTGAAAAGTTCCTAAAGTT TGACCGAAGATATTCCTCCAATGTTACTTGCTCTTGAGTAATTGACCGTG CATTCCCCTGTAATGTACATTGGGCTCCAGTCTTCCCCATCATATTTCTT GCAGTTACATTATTAGCTATTCAACTTTCCACCCTACATATTCTCTATTT CAGCTTGGTAAGAGCACAATTATGGTGAATTACAATCCTGAAACTGTCAG TACAGACTATGATGAATGTGATCGATTGTACTTCGATGAAATCACATTTG AGGTAATTCTTTATCAACCGATAATTCAAATTGTCATTTTTCTGTTAACC CTGAAAGCTGACAAGGTATTTGCTAATTTTAGTCCTAACTATTTCAAAGA GTCCCTGTGACTAATTCAACCTGCCTTCAAACCAAACAGATGACCTAAAC AGATTGAACAGAACTTTAGAAATCATCAAAACACGACTTGTCTTTTTTCC AGACAATCATGGATATCTACCATAAAGAAGACCCAGAAGGTATTATCTTA TCAATGGGAGGACAGGTTGCCAACAACATTGCTATGCATCTCCACAGACA GGAAGTAAGGCTTTAACATCTGAAAACATTTACCAGAGTTCAGAAATTAT CCAAATAATATTCACATTCCTCATGTTTACTTTAATCTTCTTGCTACCCC CAATGTTTGTTTATAATTTGGAAAGTTCCCCTGGATGTTTGTCTATTTTT AAGAGTTTCCTTACAATCTTCATGTAATTGTAATGGAAATGGTAATGTCT TGGAAAAATATTATGACCAAAAACGTCATGTCATTTTTACTAAGATATTT GTTTTTCCATTAGGTGAGGATCCTTGGCACATCGCCAGAAATGATTGACA ACGCTGAAAACAGATTCAAATTCTCTCGTATGCTAGACAACATTGGAATC CTACAACCAACATGGAAAGAGTTGACCACGATGGAGGTGAGCTCATCAGT TATTCATAATGCACCTATCAAACCTTGAACTTTGGTCTTACTTACTTAAA ATGGATGTCTGTGTTTATTGCTTTTTATTGCTGATATGCCATCAAATACA GAATATCTAACCCTGANAATATTATGGTCTTGGAAAAATATTATGACCAA AAACGTCACGTCATTTTTACTAAGATATTTGTTTTTCCATTAGGTGAGGA TCCTTGGCACATCGCCAGAAATGATTGACAACGCTGAAAACAGATTCAAA TTCTCTCGTATGCTAGACAACATTGGAATCCTACAACCAACATGGAAAGA GTTGACCACGATGGAGGTGAGCTCATCAGTTATTCATAATGCACCTATCA AACCTTGAACTTTGGTCTTACTTACTTAAAATGGATGTCTGTGTTTATTG CTTTTNTGATCGATTGTACTTCGATGAGATCACATTTGAGGTAATTCTTT ATCAACCGATAATTCAAATTGTCATTTTTCTGTTAACCCTGAAAGCTGAC ATGGTATTTGCTAATTTTAGTCCTAACTATTTCAAAGAGTCCCTGTGACT AATTCAACCTGCCTTCAAACCAAACAGATGACCTAAACAGATTGAACAGA ACTTTAGAAATCATCAAAACACGACTTGTCTTTTTTCCAGACAATCATGG ATATCTACCATAAAGAAGACCCAGAAGGTATTATCTTATCAATGGGAGGA CAGGTTGCCAACAACATTGCTATGCATCTCCACAGACAGGAAGTAAGGCT TTAACATCTGAAAACATTTACCAGAGTTCAGAAATTATCCAAATAATATT CACATTCCTCATGTTTACTTTAATCTTCTTGCTACCCCCAATGTTTGTTT ATAATTTGGAAAGTTCCCCTGGATGTTTGTCTATTTTTAAGAGTTTCCTT ACAATCTTCATGTAATTGTAATGGAAATGGTAAAATATTATGGTCTTGGA AAAATATTATGACCAAAAACGTCACGTCATTTTTACTAAGATATTTGTTT TTCCATTAGGTGAGGATCCTTGGCACATCGCCAGAAATGATTGACAACGC TGAAAACAGATTCAAATTCTCTCGTATGCTAGACAACATTGGAATCCTAC AACCAACATGGAAAGAGTTGACCACGATGGAGGTGAGCTCATCAGTTATT CATAATGCACCTATCAAACCTTGAACTTTGGTCTTACTTACTTAAAATGG ATGTCTGTGTTTATTGTATGGATATGCCATCAAATATAGAATATCTAACC CTGATAAATTCAAACCCAAATCTCTTTGATGGAGTTTGTTACTGTCAACC TTGGTTTGTGTTAGTTAAGTTTCTAATCCCAGATTTTCATTGCATCCTTA TTTAAGTTCTTCACGATTTGCTCTTAGCTATTTTGGATATTCAAACTCTG AATTTACAGATTTTGCCCGGGGGGACGGTATGTGAGGCAAAAAAAATGGC TTTTAGAATCGCACCCTTACAGTGCAGAAAAAATCGGTGAAATTCATACC CTTACAGTGCATTTTTTCACATTTTAAACTCGTTTAGAGCATGAAAAGAT TTTCGAGAAAAAATTAGCAATTTTTCCTAGATTTGCTGAAATTTTCACCC ATACAGTGCATTTATCAAAAGTCCACCCTTACAGTGCATTTCTGATATTT TGAAAAACATACCCTTAACCACCGCACATACCCGTCGGNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCAC GAGATTTTGCAGACAAAATAATTTACTATTCAGTCATTACCATTTCTGCA TTTTGTTTAAGGAAGCCTATCAATTCTGCACCAAAGTTGGTTACCCAGTG CTGGTACGACCTTCATACGTGTTGAGTGGAGCTGCCATGAATGTTGTTTA TGCTGAAGATGATTTAGAATCATATCTTGGATCTGCTGTCTCCATCTCTA AGGAGCATCCAGTTGTCATCTCCAAATTTATATCCAATGCTAAAGTAACT GCAATTTATTCTACCTATAGTTCGTTTTGAATTGTTGATGTGGAAATACC AATTTCTGCACAGATTTTTCGATAGGAAAAAAAAACAATCTGAATATTCA ACAATGTTTTTTTTAAGTTTTCTTCTACAAACCGAAATAGTTCAATTCTT TGGTAAATGGTTACCCGAACTCTACGAGTCTATCTTCTTTGAATCTAGCT TTATTCTTAACCAGGAAATCTTAGTTACGTTTTTTGCAGTCGCACTTTGA ATCCAGTCTGTGTAAAAGTTCCAACATCGTTTCTTAAAATCTACCCGAAC GCGACCGTAGTACAGTGGTAGAGCATCCGGCTGCGGTTCGCAAGGTTGTG GGTTCAACCCCCAGCCGGGTCATACCAAAGATTCCCAAAATGGTACTTGA TGCCTCTCTGCTTGATGCTCAGCACNAATACCAATTTCTGCACAGATTTT TCGATAAGAAAAAAAAACAATCTGAATATTCAACAATGTTTTTTTTAAGT TTTCTTCTACAAACCGAAATAGTTCAATTCTTTGGTAAATGGTTACCCGA ACTCTACGAGTCTATCTTCTTTGAATCTAGCTTTATTCTTAACCAGGAAA TCTTAGTTACGTTTTTTGCAGTCGCACTTTGAATCCAGTCTGTGTAAAAG TTCCAACATCGTTTCTTAAAATCTACCCGAACGCTACCAACTTACAATTA CTTAATCGATTTCTTTCAACCAGGAAATTGACGTTGATGCCGTTGCCAAC GACGGTGAAGTGATGGCCATGGTCGTCTCTGAACACGTTGAAAACGCGGG TGTCCACTCTGGTGACGCAACCATGATCTGTCCACCACAAGACATCAATA CGGAAACCATGGGACGGATCAAACAGATCTGTATTGCAGTTGGAAACGCC CTCAATGTGTCTGGTCCTTTCAATATGCAACTTATTGCTAAGGTATAAAG TCTGTTCATCTCTATACTTTCAATTAATTTGACACTTTGTAGAATAGTGA ATTCAAAGTACTCCTTGACGACGTATAGAGAAAGGAAAACTTGCGTTCTT CCAATACGCCTAATTACTTTTACACCACTATCACGTCTCCTGTGTCAAAA AAACGTAATGTTTTTGTGAGTACGTCAACTTCATTATTTTTATGAGAATC TAAAGAACGGGAAATTCTCCTTCGGTAATGGTATGCTATTTTACCAAGGC AAGGAATACACAACATCTCATGGATCTTCATTTACTCTTTTAGGACAATC AATTGAAGGTGATCGAATGCAATTTACGGGTGTCTCGGTCCTTCCCTTTT GTTTCCAAAACTCTAGATTGTGATTTGGTTGCCTTGGCAACCAAAATCAT CGTTGGTGCTCCTGCTGAACCTGCATTCAACATTATGGATAAGTGTGAGA AGATCGGCTGTAAGGTATGAACAGAAATAAATATTCCTCCTTCAAAAGCA AATTTCAAGTTTAAATGATTGAAAAATTGGTCATATTTTTGTCCAGAAAT ATTAACCGTCATTTTCTCCTGTAAGAGTCCACTTTTGTCAAACAGATAGC TGATTGTAGTCCGAATGCCTATACTCAAGTACTTTAGTATCACAACTATT TGTCCGCTCGCCATACCTTCATAACTCAGAACCAAAAGCATCGAAGAAAT TTTACATATATTTTGGATTTATCTCTAAGGGGTATCTACATTTTCTTTTG AGCTTGAAAAGACGCATAGACACATAGTGGCTATGTTATAAATCAACCGG ACAGTCCTGAAATTGAAATCAACTTTCTGTCTCTCTGCAGGTGCCACAAT TTTCATTTTCACGACTTGCTGGAGCTGACGTTCAACTTGGAGTAGAGATG GCAAGCACAGGAGAAGTAGCATGCTTCGGTGAAAATAGATACGAAGCTTA CTTGAAGGCCTTGATGAGCACAGGTTTCAAATTACCCAAGAAAAACATAC TGCTGACTGTTGGTAGTTATAAGGTAATAATTCTTCATTTTATTTCAATA CAATTTAGTTTTTCTGGTGGTAATTCGTAGTGGTGAAATTTGTTTTTTAG ATTTAAACTATCCACAAAAACTTTTATTCAGGCAGTCTTGACGCTCCATT GTTCTCATTATCTCGAAATGAAAACAAAGTTTCATCCATTGAATTTAGAA GATTTTTAGGATCTTCAACATAATCAGCCTGTAGTATATAAACCAGACTT CAAACAATTATGTTCACTACTTCCACACTCTCACCTTATCATTGATCTGG ATTGTTTTAGGCGAAGAAAGAAATGTTGCCAAGTGTTCGTTTACTGGAGA AGATGGGATACGAATTGTATGCTAGCATGGGTACCGGTGACTTCTATCAA GAACATGGTGTACAGGTCTGTCGAGTATCTTAGTTGAGGGCGTTGGTCTT TATTCTCTTAGCTTAGAGGTGTCAGCCTTTATTCTCTGAGCTAAGGACAT TGGTTTCTCTGCTCTCTTAGCTAAACATGTTTGTCTCTGCTCTCCCTTAA AAGCCTTTATCAAAAGACATGGAATGTTTATGAATAAAATGTTATTAAAA TAAGCGGGATCATTTTTGGGTACTTTGTTCGCTTTCATGATAAATTGTAT GTCCAGTAGCACAGAAGTCTTTATATTTCAGAGTTGAAAGTTAAGTTACG AAGTTTCTTGTACATGAAATTAGGTTCTTTTTTTGAACTGTCTAACTCAT CCAACATTTCGTCAAATTAATTGGTTCTTGATTTCTACCGGACCAAATAG CTTCGACATTTGTCTTTCAGGTCCAAATCATTGATTGGCCTTTCGAGGAG AATGGAACTGAGGGTCAGGAAGAGAGCATTCAAGACTACCTCACACAGAA CAAATTTGATTTGGTCATCAACATTCCAATGAGGGGTAGTGGTACCAAGA AGAAGTCTCATTTCATCACACATGGATATCGCACCCGACGAATGGCCATC GATCATTCCGTCTCATTGATCACCAACATTAAGTGTGCCAAACTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000986XLOC_000986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001876-exon-sc0000012-1575043694:107947..108101TCONS_00001876-exon-sc0000012-1575043694:107947..108101Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1575043694:107479..107700TCONS_00001876-exon-sc0000012-1575043694:107479..107700Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1575043694:106941..107129TCONS_00001876-exon-sc0000012-1575043694:106941..107129Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1575043694:106357..106590TCONS_00001876-exon-sc0000012-1575043694:106357..106590Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1575043694:105977..106114TCONS_00001876-exon-sc0000012-1575043694:105977..106114Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1575043694:105379..105546TCONS_00001876-exon-sc0000012-1575043694:105379..105546Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1575043694:105043..105137TCONS_00001876-exon-sc0000012-1575043694:105043..105137Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1575043694:103332..103584TCONS_00001876-exon-sc0000012-1575043694:103332..103584Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1575043694:103000..103098TCONS_00001876-exon-sc0000012-1575043694:103000..103098Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1575043694:102698..102799TCONS_00001876-exon-sc0000012-1575043694:102698..102799Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1575043694:101986..102108TCONS_00001876-exon-sc0000012-1575043694:101986..102108Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1575043694:100208..100390TCONS_00001876-exon-sc0000012-1575043694:100208..100390Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1575043694:99260..99478TCONS_00001876-exon-sc0000012-1575043694:99260..99478Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1575043694:98788..98958TCONS_00001876-exon-sc0000012-1575043694:98788..98958Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1575043694:98229..98411TCONS_00001876-exon-sc0000012-1575043694:98229..98411Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1575043694:97837..97941TCONS_00001876-exon-sc0000012-1575043694:97837..97941Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1575043694:97205..97431TCONS_00001876-exon-sc0000012-1575043694:97205..97431Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:107947..108101TCONS_00001876-exon-sc0000012-1510915933:107947..108101Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:107479..107700TCONS_00001876-exon-sc0000012-1510915933:107479..107700Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:106941..107129TCONS_00001876-exon-sc0000012-1510915933:106941..107129Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:106357..106590TCONS_00001876-exon-sc0000012-1510915933:106357..106590Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:105977..106114TCONS_00001876-exon-sc0000012-1510915933:105977..106114Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:105379..105546TCONS_00001876-exon-sc0000012-1510915933:105379..105546Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:105043..105137TCONS_00001876-exon-sc0000012-1510915933:105043..105137Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:103332..103584TCONS_00001876-exon-sc0000012-1510915933:103332..103584Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:103000..103098TCONS_00001876-exon-sc0000012-1510915933:103000..103098Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:102698..102799TCONS_00001876-exon-sc0000012-1510915933:102698..102799Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:101986..102108TCONS_00001876-exon-sc0000012-1510915933:101986..102108Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:100208..100390TCONS_00001876-exon-sc0000012-1510915933:100208..100390Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:99260..99478TCONS_00001876-exon-sc0000012-1510915933:99260..99478Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:98788..98958TCONS_00001876-exon-sc0000012-1510915933:98788..98958Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:98229..98411TCONS_00001876-exon-sc0000012-1510915933:98229..98411Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:97837..97941TCONS_00001876-exon-sc0000012-1510915933:97837..97941Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1510915933:97205..97431TCONS_00001876-exon-sc0000012-1510915933:97205..97431Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:107947..108101TCONS_00001876-exon-sc0000012-1491911889:107947..108101Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:107479..107700TCONS_00001876-exon-sc0000012-1491911889:107479..107700Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:106941..107129TCONS_00001876-exon-sc0000012-1491911889:106941..107129Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:106357..106590TCONS_00001876-exon-sc0000012-1491911889:106357..106590Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:105977..106114TCONS_00001876-exon-sc0000012-1491911889:105977..106114Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:105379..105546TCONS_00001876-exon-sc0000012-1491911889:105379..105546Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:105043..105137TCONS_00001876-exon-sc0000012-1491911889:105043..105137Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:103332..103584TCONS_00001876-exon-sc0000012-1491911889:103332..103584Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:103000..103098TCONS_00001876-exon-sc0000012-1491911889:103000..103098Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:102698..102799TCONS_00001876-exon-sc0000012-1491911889:102698..102799Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:101986..102108TCONS_00001876-exon-sc0000012-1491911889:101986..102108Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:100208..100390TCONS_00001876-exon-sc0000012-1491911889:100208..100390Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:99260..99478TCONS_00001876-exon-sc0000012-1491911889:99260..99478Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:98788..98958TCONS_00001876-exon-sc0000012-1491911889:98788..98958Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:98229..98411TCONS_00001876-exon-sc0000012-1491911889:98229..98411Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:97837..97941TCONS_00001876-exon-sc0000012-1491911889:97837..97941Clytia hemisphaericaexon
TCONS_00001876-exon-sc0000012-1491911889:97205..97431TCONS_00001876-exon-sc0000012-1491911889:97205..97431Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:97205..108101 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.11799 6.6642 1.39584 0.554238 5.57258 5.9128 1.02273 0.585831 1.52297 1.05581 4.47887 2.2592 1.37051 3.25223 3.12909 2.77849 1.64471 1.50533 1.00872 0.217936 2.41128 0.742859 5.63957 5.03037 0.000109744 1.21644 0.799781 0.875146 4.56721 5.03289
Blast
BLAST of TCONS_00001876 vs. Swiss-Prot (Human)
Match: PYR1 (CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3)

HSP 1 Score: 1280.39 bits (3312), Expect = 0.000e+0
Identity = 651/954 (68.24%), Postives = 771/954 (80.82%), Query Frame = 3
Query:    9 GILEKYNVAVLGTPTKSIEWTEDRKMFSDKMGEIGEKVAPSSVAYTVDEAITAANRLGYPVXXXXXXXXXXXXXXXXXNDNELKKLAASAFAHSKQCLVDKSLKGWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGESIVVAPSQTLTNEEYNMLRRTAIKVIRKLGVVGECNIQYALHPDSKEFYIIEVNXXXXXXXXXXXXXTGYPLAYVAAKLALGIPLPKLRNSVTNSTTACFEPSLDYCVVKVPRWDLDKFQRVSTKIGSSMKSVGEVMAIGRSFEEAIQKSLRMVDDSNLGFDANNLELDEQVLVEPSDKRIFHVAAALRRGYSIDQLYELTRIDKWFLSKLAKIINYAKMLEEKYPKVGAGKDTIPCNILLKGKQLGFSDKQIANCVQSSELVIRKYRYECNILPCFKQIDTVAAEFPAEANYLYLTYNGDCDDVTYAESQNKVMVIGSGVYRIGSSVEFDACAVGCIRELKRLGKSTIMVNYNPETVSTDYDECDRLYFDEITFETIMDIYHKEDPEGIILSMGGQVANNIAMHLHRQEVRILGTSPEMIDNAENRFKFSRMLDNIGILQPTWKELTTMEEAYQFCTKVGYPVLVRPSYVLSGAAMNVVYAEDDLESYLGSAVSISKEHPVVISKFISNAKEIDVDAVANDGEVMAMVVSEHVENAGVHSGDATMICPPQDINTETMGRIKQICIAVGNALNVSGPFNMQLIAKDNQLKVIECNLRVSRSFPFVSKTLDCDLVALATKIIVGAPAEPAFNIMDKCEKIGCKVPQFSFSRLAGADVQLGVEMASTGEVACFGENRYEAYLKALMSTGFKLPKKNILLTVGSYKAKKEMLPSVRLLEKMGYELYASMGTGDFYQEHGVQVQIIDWPFEE--NGTEGQEESIQDYLTQNKFDLVINIPMRGSGTKKKSHFITHGYRTRRMAIDHSVSLITNIKCAKL 2864
            G+L +Y V VLGTP ++IE TEDR+ F+ +M EIGE VAPS  A ++++A  AA RLGYPVL+RAAFALGGLGSGFASN  EL  L A AFAH+ Q LVDKSLKGWKE+EYEVVRDAY NC+TVCNMEN DPLGIHTGESIVVAPSQTL + EY +LR+TAIKV + LG+VGECN+QYAL+P+S+++YIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLP+LRNSVT  T A FEPS+DYCVVK+PRWDL KF RVSTKIGS MKSVGEVM IGRSFEEA QK+LRMVD++ +GFD     + +  L  P+DKRIF VAAAL  GYS+D+LYELTRID+WFL ++ +II +A++LE+           +P ++L + K LGFSDKQIA  V S+EL +RK R E  I P  KQIDTVAAE+PA+ NYLYLTY G   D+T+      V+V+GSGVYRIGSSVEFD CAVGCI++L+++G  TIMVNYNPETVSTDYD CDRLYFDEI+FE +MDIY  E+PEG+ILSMGGQ+ NN+AM LHRQ+ R+LGTSPE ID+AENRFKFSR+LD IGI QP W+EL+ +E A QFC  VGYP +VRPSYVLSGAAMNV Y + DLE +L SA ++SKEHPVVISKFI  AKEIDVDAVA+DG V A+ +SEHVENAGVHSGDAT++ PPQDI  +T+ RIK I  AVG  L V+GPFN+QLIAKD+QLKVIECN+RVSRSFPFVSKTL  DLVALAT++I+G   EP   +M     +G KVPQFSFSRLAGADV LGVEM STGEVA FGE+R EAYLKA++STGFK+PKKNILLT+GSYK K E+LP+VRLLE +GY LYAS+GT DFY EHGV+V  +DW FEE  +G    + SI + L +  F+LVIN+ MRG+G ++ S F+T GYRTRR+A D SV LI +IKC KL
Sbjct:  492 GVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEAANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHTSQVLVDKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQTAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLPELRNSVTGGT-AAFEPSVDYCVVKIPRWDLSKFLRVSTKIGSCMKSVGEVMGIGRSFEEAFQKALRMVDENCVGFDHTVKPVSDMELETPTDKRIFVVAAALWAGYSVDRLYELTRIDRWFLHRMKRIIAHAQLLEQHR------GQPLPPDLLQQAKCLGFSDKQIALAVLSTELAVRKLRQELGICPAVKQIDTVAAEWPAQTNYLYLTYWGTTHDLTFRTPH--VLVLGSGVYRIGSSVEFDWCAVGCIQQLRKMGYKTIMVNYNPETVSTDYDMCDRLYFDEISFEVVMDIYELENPEGVILSMGGQLPNNMAMALHRQQCRVLGTSPEAIDSAENRFKFSRLLDTIGISQPQWRELSDLESARQFCQTVGYPCVVRPSYVLSGAAMNVAYTDGDLERFLSSAAAVSKEHPVVISKFIQEAKEIDVDAVASDGVVAAIAISEHVENAGVHSGDATLVTPPQDITAKTLERIKAIVHAVGQELQVTGPFNLQLIAKDDQLKVIECNVRVSRSFPFVSKTLGVDLVALATRVIMGEEVEPV-GLMTGSGVVGVKVPQFSFSRLAGADVVLGVEMTSTGEVAGFGESRCEAYLKAMLSTGFKIPKKNILLTIGSYKNKSELLPTVRLLESLGYSLYASLGTADFYTEHGVKVTAVDWHFEEAVDGECPPQRSILEQLAEKNFELVINLSMRGAGGRRLSSFVTKGYRTRRLAADFSVPLIIDIKCTKL 1435          

HSP 2 Score: 167.162 bits (422), Expect = 9.122e-42
Identity = 116/392 (29.59%), Postives = 190/392 (48.47%), Query Frame = 3
Query: 1359 NKVMVIGSGVYRIGSSVEFDACAVGCIRELKRLGKSTIMVNYNPETVSTDYDECDRLYFDEITFETIMDIYHKEDPEGIILSMGGQVANNIAMH------LHRQEVRILGTSPEMIDNAENRFKFSRMLDNIGILQPTWKELTTMEEAYQFCTKVGYPVLVRPSYVLSGAAMNVVYAEDDLESYLGSAVSISKEHPVVISKFISNAKEIDVDAVAND-GEVMAMVVSEHVENAGVHSGDATMICPPQDINTETMGRIKQICIAVGNALNVSGPFNMQ--LIAKDNQLKVIECNLRVSRSFPFVSKTLDCDLVALATKIIVGAP----------AEPAFNI-MDKCEKIGCKVPQFSFSRLAGADVQLGVEMASTGEVACFGENRYEAYLKAL 2474
             KV+++GSG   IG + EFD      I+ LK     T+++N N  TV T     D++YF  IT   +  +   E P+G++L+ GGQ A N  +       L R  VR+LGT  E I+  E+R  F+  +  IG      +   ++E+A     ++GYPVLVR ++ L G         ++L + +  A + + +  V++ K +   KEI+ + V +  G  + +   E+++  G+H+G++ ++ P Q +N      ++Q  I V   L + G  N+Q  L  +  Q  +IE N R+SRS    SK     L  +A K+ +G P             AF   +D C     K+P++  S+      ++G  M S GEV   G +  EA+ KAL
Sbjct:  394 RKVLILGSGGLSIGQAGEFDYSGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLLTFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEAANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHTSQ--VLVDKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQTAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLPELRNSVTGGTAAFEPSVDYCV---VKIPRWDLSKFLRVSTKIGSCMKSVGEVMGIGRSFEEAFQKAL 780          
The following BLAST results are available for this feature:
BLAST of TCONS_00001876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PYR19.122e-4268.24CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3[more]
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