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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001871 ID=TCONS_00001871|Name=TCONS_00001871|organism=Clytia hemisphaerica|type=transcript|length=7762bpRun BLAST on NCBI transcript from alignment at sc0000012:62297..121470- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001871 ID=TCONS_00001871|Name=TCONS_00001871|organism=Clytia hemisphaerica|type=transcript|length=59174bp|location=Sequence derived from alignment at sc0000012:62297..121470- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00001871 vs. Swiss-Prot (Human)
Match: PYR1 (CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3) HSP 1 Score: 2035.38 bits (5272), Expect = 0.000e+0 Identity = 1027/1600 (64.19%), Postives = 1246/1600 (77.88%), Query Frame = 1
Query: 310 MATLILDDGTKYHGQIFGDERSIAGEVVFQTGMVGYPESLTDPSYNSQILVLTYPLIGNYGIPNDSRDEHGMLKFFESEKIWNNGMIVGDLTEDYSHWLATKSLSEWLKEHKIPGITGIDTRALTKKLRENGTMLGKIVLDGEDEASVPFDDPNKRNLIAEVSCKEPKLYNPKGKIKMIAVDFGIKYNQIRCLIDCDCQVLVVPWDYDYSTLLKNKEYDGLFMSNGPGDPSLCQVSIDTLRKVITELPDVPVFGICMGHQILSLAAGCGSYKMKYGNRGHNQPATHLETQRCFITCQNHGFAIDTDSLPKEWSVLFTNENDGSNEGIVHNTKPIFSVQFHPEHQGGPRDLELLFGFFVDIVNKLKIDS--NLCLRTMLKETLTFHPAEETRSRAFKPKKVXXXXXXXXXXXQAGEFDYSGSQAIKALKEEKIHTVLINPNIATVQTSKGLADKTYFLPVNFEFTSKVIEVERPDGILLSFGGQTALNCGLLLKERGILEKYNVAVLGTPTKSIEWTEDRKMFSDKMGEIGEKVAPSSVAYTVDEAITAANRLGYPVXXXXXXXXXXXXXXXXXNDNELKKLAASAFAHSKQCLVDKSLKGWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGESIVVAPSQTLTNEEYNMLRRTAIKVIRKLGVVGECNIQYALHPDSKEFYIIEVNXXXXXXXXXXXXXTGYPLAYVAAKLALGIPLPKLRNSVTNSTTACFEPSLDYCVVKVPRWDLDKFQRVSTKIGSSMKSVGEVMAIGRSFEEAIQKSLRMVDDSNLGFDANNLELDEQVLVEPSDKRIFHVAAALRRGYSIDQLYELTRIDKWFLSKLAKIINYAKMLEEKYPKVGAGKDTIPCNILLKGKQLGFSDKQIANCVQSSELVIRKYRYECNILPCFKQIDTVAAEFPAEANYLYLTYNGDCDDVTYAESQNKVMVIGSGVYRIGSSVEFDACAVGCIRELKRLGKSTIMVNYNPETVSTDYDECDRLYFDEITFETIMDIYHKEDPEGIILSMGGQVANNIAMHLHRQEVRILGTSPEMIDNAENRFKFSRMLDNIGILQPTWKELTTMEEAYQFCTKVGYPVLVRPSYVLSGAAMNVVYAEDDLESYLGSAVSISKEHPVVISKFISNAKEIDVDAVANDGEVMAMVVSEHVENAGVHSGDATMICPPQDINTETMGRIKQICIAVGNALNVSGPFNMQLIAKDNQLKVIECNLRVSRSFPFVSKTLDCDLVALATKIIVGAPAEPAFNIMDKCEKIGCKVPQFSFSRLAGADVQLGVEMASTGEVACFGENRYEAYLKALMSTGFKLPKKNILLTVGSYKAKKEMLPSVRLLEKMGYELYASMGTGDFYQEHGVQVQIIDWPFEE--NGTEGQEESIQDYLTQNKFDLVINIPMRGSGTKKKSHFITHGYRTRRMAIDHSVSLITNIKCAKLFCEALFKVGSKIEVKTHIDCISSGNIVRLPGLIDVHVHLRQPGAEYKEDFDSGTAAALAGGVTMVLCMPNTKPAVVDQPTFQLAHQLAIKNARCDFALYAGASSTNALMLPKIAPGCAGLKMYLNDTYTTLKMDNLXDCTRL--CWSQNVP 5091
MA L+L+DG+ GQ FG S AGEVVFQTGMVGYPE+LTDPSY +QILVLTYPLIGNYGIP D DE G+ K+FES I ++VG+ SHW AT++L EWL++H IPG+ G+DTR LTKKLRE G++LGK+V +G + +S+PF DPN R L+ EVS K P+++N G +++A+D G+KYNQIRCL +V VVPWD+ L ++EY+GLF+SNGPGDP+ + TL +V++E PVFGIC+GHQ+L+LA G +YKM+YGNRGHNQP + + RCF+T QNHGFA++TDSLP +W+ LFTN NDGSNEGIVHN+ P FSVQFHPEHQ GP D+ELLF F++ V + + +R L E L S P+KVLILGSGGLSIGQAGEFDYSGSQAIKALKEE I T+LINPNIATVQTS+GLADK YFLP+ + ++VI ERPDG+LL+FGGQTALNCG+ L + G+L +Y V VLGTP ++IE TEDR+ F+ +M EIGE VAPS A ++++A AA RLGYPVL+RAAFALGGLGSGFASN EL L A AFAH+ Q LVDKSLKGWKE+EYEVVRDAY NC+TVCNMEN DPLGIHTGESIVVAPSQTL + EY +LR+TAIKV + LG+VGECN+QYAL+P+S+++YIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLP+LRNSVT T A FEPS+DYCVVK+PRWDL KF RVSTKIGS MKSVGEVM IGRSFEEA QK+LRMVD++ +GFD + + L P+DKRIF VAAAL GYS+D+LYELTRID+WFL ++ +II +A++LE+ +P ++L + K LGFSDKQIA V S+EL +RK R E I P KQIDTVAAE+PA+ NYLYLTY G D+T+ V+V+GSGVYRIGSSVEFD CAVGCI++L+++G TIMVNYNPETVSTDYD CDRLYFDEI+FE +MDIY E+PEG+ILSMGGQ+ NN+AM LHRQ+ R+LGTSPE ID+AENRFKFSR+LD IGI QP W+EL+ +E A QFC VGYP +VRPSYVLSGAAMNV Y + DLE +L SA ++SKEHPVVISKFI AKEIDVDAVA+DG V A+ +SEHVENAGVHSGDAT++ PPQDI +T+ RIK I AVG L V+GPFN+QLIAKD+QLKVIECN+RVSRSFPFVSKTL DLVALAT++I+G EP +M +G KVPQFSFSRLAGADV LGVEM STGEVA FGE+R EAYLKA++STGFK+PKKNILLT+GSYK K E+LP+VRLLE +GY LYAS+GT DFY EHGV+V +DW FEE +G + SI + L + F+LVIN+ MRG+G ++ S F+T GYRTRR+A D SV LI +IKC KLF EAL ++G +K H+DC++S +VRLPGLIDVHVHLR+PG +KEDF SGTAAALAGG+TMV MPNT+P ++D P LA +LA ARCDFAL+ GASS NA L +A AGLK+YLN+T++ L++D++ W ++P
Sbjct: 1 MAALVLEDGSVLRGQPFGAAVSTAGEVVFQTGMVGYPEALTDPSYKAQILVLTYPLIGNYGIPPDEMDEFGLCKWFESSGIHVAALVVGECCPTPSHWSATRTLHEWLQQHGIPGLQGVDTRELTKKLREQGSLLGKLVQNGTEPSSLPFLDPNARPLVPEVSIKTPRVFNTGGAPRILALDCGLKYNQIRCLCQRGAEVTVVPWDHA----LDSQEYEGLFLSNGPGDPASYPSVVSTLSRVLSEPNPRPVFGICLGHQLLALAIGAKTYKMRYGNRGHNQPCLLVGSGRCFLTSQNHGFAVETDSLPADWAPLFTNANDGSNEGIVHNSLPFFSVQFHPEHQAGPSDMELLFDIFLETVKEATAGNPGGQTVRERLTERLCPPGIPTPGSGLPPPRKVLILGSGGLSIGQAGEFDYSGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLLTFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEAANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHTSQVLVDKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQTAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLPELRNSVTGGT-AAFEPSVDYCVVKIPRWDLSKFLRVSTKIGSCMKSVGEVMGIGRSFEEAFQKALRMVDENCVGFDHTVKPVSDMELETPTDKRIFVVAAALWAGYSVDRLYELTRIDRWFLHRMKRIIAHAQLLEQHR------GQPLPPDLLQQAKCLGFSDKQIALAVLSTELAVRKLRQELGICPAVKQIDTVAAEWPAQTNYLYLTYWGTTHDLTFRTPH--VLVLGSGVYRIGSSVEFDWCAVGCIQQLRKMGYKTIMVNYNPETVSTDYDMCDRLYFDEISFEVVMDIYELENPEGVILSMGGQLPNNMAMALHRQQCRVLGTSPEAIDSAENRFKFSRLLDTIGISQPQWRELSDLESARQFCQTVGYPCVVRPSYVLSGAAMNVAYTDGDLERFLSSAAAVSKEHPVVISKFIQEAKEIDVDAVASDGVVAAIAISEHVENAGVHSGDATLVTPPQDITAKTLERIKAIVHAVGQELQVTGPFNLQLIAKDDQLKVIECNVRVSRSFPFVSKTLGVDLVALATRVIMGEEVEPV-GLMTGSGVVGVKVPQFSFSRLAGADVVLGVEMTSTGEVAGFGESRCEAYLKAMLSTGFKIPKKNILLTIGSYKNKSELLPTVRLLESLGYSLYASLGTADFYTEHGVKVTAVDWHFEEAVDGECPPQRSILEQLAEKNFELVINLSMRGAGGRRLSSFVTKGYRTRRLAADFSVPLIIDIKCTKLFVEALGQIGPAPPLKVHVDCMTSQKLVRLPGLIDVHVHLREPGGTHKEDFASGTAAALAGGITMVCAMPNTRPPIIDAPALALAQKLAEAGARCDFALFLGASSENAGTLGTVAGSAAGLKLYLNETFSELRLDSVVQWMEHFETWPSHLP 1586 HSP 2 Score: 766.918 bits (1979), Expect = 0.000e+0 Identity = 383/695 (55.11%), Postives = 486/695 (69.93%), Query Frame = 2
Query: 5045 TTSKIAPGCAGLKMYLNDTYTTLKMDNLSDWMKHFENWPKHLPIVCHAESQTTAAVILMSELYNRPVHIAHVARKEEILVIKAAKKKGLQVTCEVAPHHLFLSTDDTKRIGEGRARVKPQICSAEDQKALWENMDFIDCFATDHAPHHVDEKNSENPPPGFPGLETMLPLLLTAVKDGRLTLDDVILRLHTNPRRIFGLPEQHDTYVEVDLNEEWTIPDAMAYTKSKWTPFAGMKVFGKVCRVVVRGELAVIEDQVLAKPGFGEDVRAWE-------PPNC--------------------------LPP-LSKAQKQKLDAINNEQPTPANLPDIEQPSLLSGP------PTPIRKISNIMEKLHTQDGLSAEXXXXXXXXXXXXXSQLLVGKHVLKVESINKDQLNALFNIAQQLKKEERRGRQIDTLKGKVLALMFFEPSTRTACSFQSAMQRLGGTTIAIKPGNSSLTKGESVQDTVATMACYSDVIVMRHPTKGMVQQAAEKSRRPIINAGDGVGEHPTQALLDVFTIREEIGTVNGITVTMVGDLKNGRTVHSLARLLTLYRVNLQYVSPDSLPMPENVQNYVHKCGIPQRQFKTIEEALPTTDVLYMTRIQRERFADQQEYEKVHGYFVLTPKMLTKAKNKMIVMHPFPRVNEISTEVDCDPRAAYFRQMEYGMFVRMALLSMLTGRF 7009
T +A AGLK+YLN+T++ L++D++ WM+HFE WP HLPIV HAE QT AAV+++++L R VHI HVARKEEIL+IKAAK +GL VTCEVAPHHLFLS DD +R+G G+ V+P++ S +D +ALWENM IDCFA+DHAPH ++EK PPPGFPGLETMLPLLLTAV +GRL+LDD++ RLH NPRRIF LP Q DTYVEVDL EWTIP M ++K+ WTPF G KV G V RVV+RGE+A I+ QVL PG+G+DVR W PP+ LPP + +A L A E+P + + +P L+ P P P+ + ++ + L T L + H LVG+H+L V+ KDQ++ LFN+A L+ ++ R +D LKGKV+A MF+E STRT+ SF +AM RLGG ++ SS+ KGES+ D+V TM+CY+DV+V+RHP G V+ AA+ RRP+INAGDGVGEHPTQALLD+FTIREE+GTVNG+T+TMVGDLK+GRTVHSLA LLT YRV+L+YV+P SL MP V+ +V G Q +F++IEEALP TDVLYMTRIQ+ERF QEYE G F+LTP ++T+AK KM+VMHP PRVNEIS EVD DPRAAYFRQ E GM++RMALL+ + GRF
Sbjct: 1544 TLGTVAGSAAGLKLYLNETFSELRLDSVVQWMEHFETWPSHLPIVAHAEQQTVAAVLMVAQLTQRSVHICHVARKEEILLIKAAKARGLPVTCEVAPHHLFLSHDDLERLGPGKGEVRPELGSRQDVEALWENMAVIDCFASDHAPHTLEEKCGSRPPPGFPGLETMLPLLLTAVSEGRLSLDDLLQRLHHNPRRIFHLPPQEDTYVEVDLEHEWTIPSHMPFSKAHWTPFEGQKVKGTVRRVVLRGEVAYIDGQVLVPPGYGQDVRKWPQGAVPQLPPSAPATSEMTTTPERPRRGIPGLPDGRFHLPPRIHRASDPGLPA---EEPKEKSSRKVAEPELMGTPDGTCYPPPPVPRQAS-PQNLGTPGLLHPQTSPLLHS---------LVGQHILSVQQFTKDQMSHLFNVAHTLRMMVQKERSLDILKGKVMASMFYEVSTRTSSSFAAAMARLGGAVLSFSEATSSVQKGESLADSVQTMSCYADVVVLRHPQPGAVELAAKHCRRPVINAGDGVGEHPTQALLDIFTIREELGTVNGMTITMVGDLKHGRTVHSLACLLTQYRVSLRYVAPPSLRMPPTVRAFVASRGTKQEEFESIEEALPDTDVLYMTRIQKERFGSTQEYEACFGQFILTPHIMTRAKKKMVVMHPMPRVNEISVEVDSDPRAAYFRQAENGMYIRMALLATVLGRF 2225 The following BLAST results are available for this feature:
BLAST of TCONS_00001871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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